Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018418.1

Orthogroup ID

OG0008600

Physical Location & Seq

Genomic Coordinates Reverse (-)

4194 .. 5595

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018418.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgtaccagattgaggccaattcgcagtttataactgaaaggcgcaaggcaatctcatttctgccaaatgatcctgcagttgcatcttttcttgaggatgaaaaaagatcagaggctagccctctatcacaatatgttttaagtctacgccaaatagcgcaacaaagaaatgattcactggtggaatccagtgttcttgtgggagagaattcggctgtgtttggaaagaggaaaatacaagagagtgatgaagaagatgacactagggacgaggaaggcactactgtgtttagttcatcctggttacctggagttgattccaaggataaagaacctaaagatgtgaaaaagaagaaaaagagaaagactgagcaggaggaacgggtagccattgatgaagatattgttgaagatttggtactcagctctgatgaagaagatgggccttcaagtgatgctctttcagatgcggatgaagaagaggggaagtcaaaaccatcaacacctgaaagtaagaagcataaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0008150 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0030689 GO:0030690 GO:0030691 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

175

Amino Acids

19.65

Weight (kDa)

4.6

Isoelectric Point (pI)

70.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18220
fragaria_vesca	FvH4_3g44260 FvH4_3g44260 FvH4_3g44260
malus_domestica	MD03G1015600.v1.1 MD11G1016800.v1.1
prunus_persica	Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1
pyrus_communis	pycom03g01270 pycom11g01170
rosa_chinensis	RchiOBHm_Chr5g0080571
rosa_laevigata	RLG00000036871
rosa_multiflora	Rmu_co8190986.1_g000001 Rmu_sc0018418.1_g000003 Rmu_ssc0000263.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002790
rosa_rugosa	Rorug05G0470500
rosa_samantha	Rh5AG523800 Rh5BG545900 Rh5CG569100 Rh5DG556200
rosa_wichuraiana	Rw5G048600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	145
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	2 cut(s)	5, 420
AfiI	CCNNNNNNNGG	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	410, 450
AjnI	CCWGG	2 cut(s)	299, 307
AleI	CACNNNNGTG	1 cut(s)	284
AluBI	AGCT	1 cut(s)	426
AluI	AGCT	1 cut(s)	426
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	15, 443
ApoI	RAATTY	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	172
AspLEI	GCGC	2 cut(s)	45, 160
AspS9I	GGNCC	1 cut(s)	443
AsuNHI	GCTAGC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	402, 434
BccI	CCATC	2 cut(s)	434, 505
BciT130I	CCWGG	2 cut(s)	301, 309
BfaI	CTAG	2 cut(s)	117, 264
BfmI	CTRYAG	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	301, 309
BmgT120I	GGNCC	1 cut(s)	443
BmrFI	CCNGG	2 cut(s)	301, 309
BmsI	GCATC	3 cut(s)	92, 445, 457
BmtI	GCTAGC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse1I	ACTGG	2 cut(s)	183, 189
BseBI	CCWGG	2 cut(s)	301, 309
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	3 cut(s)	103, 296, 478
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	2 cut(s)	360, 436
BseNI	ACTGG	2 cut(s)	183, 189
BshFI	GGCC	2 cut(s)	17, 445
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	17, 445
Bsp143I	GATC	2 cut(s)	70, 107
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	2 cut(s)	17, 445
BspCNI	CTCAG	2 cut(s)	361, 435
BspMAI	CTGCAG	1 cut(s)	79
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	183, 189
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	70, 107
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	301, 309
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	369, 422
BstEII	GGTNACC	1 cut(s)	303
BstF5I	GGATG	3 cut(s)	103, 296, 478
BstHHI	GCGC	2 cut(s)	45, 160
BstKTI	GATC	2 cut(s)	73, 110
BstMBI	GATC	2 cut(s)	70, 107
BstNI	CCWGG	2 cut(s)	301, 309
BstPI	GGTNACC	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	299, 307
BstSFI	CTRYAG	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	17, 445
BtsCI	GGATG	3 cut(s)	103, 296, 478
BtsIMutI	CAGTG	2 cut(s)	176, 196
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	2 cut(s)	45, 160
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	4, 419
CviJI	RGCY	7 cut(s)	17, 116, 120, 215, 389, 426, 445
CviKI_1	RGCY	7 cut(s)	17, 116, 120, 215, 389, 426, 445
CviQI	GTAC	2 cut(s)	4, 419
DdeI	CTNAG	2 cut(s)	369, 422
DpnI	GATC	2 cut(s)	72, 109
DpnII	GATC	2 cut(s)	70, 107
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	321
Eco91I	GGTNACC	1 cut(s)	303
EcoO65I	GGTNACC	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	299, 307
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaiI	YATR	3 cut(s)	32, 135, 522
FaqI	GGGAC	1 cut(s)	281
FblI	GTMKAC	1 cut(s)	145
FokI	GGATG	3 cut(s)	110, 283, 485
FspBI	CTAG	2 cut(s)	117, 264
GlaI	GCGC	2 cut(s)	44, 159
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	17, 445
HhaI	GCGC	2 cut(s)	45, 160
Hin6I	GCGC	2 cut(s)	43, 158
HinP1I	GCGC	2 cut(s)	43, 158
HinfI	GANTC	3 cut(s)	173, 185, 317
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	3 cut(s)	112, 430, 466
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	269, 456
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	2 cut(s)	77, 83
HpyF3I	CTNAG	2 cut(s)	369, 422
HspAI	GCGC	2 cut(s)	43, 158
Kzo9I	GATC	2 cut(s)	70, 107
LweI	GCATC	3 cut(s)	92, 445, 457
MaeI	CTAG	2 cut(s)	117, 264
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	2 cut(s)	72, 109
MboI	GATC	2 cut(s)	70, 107
MboII	GAAGA	9 cut(s)	263, 266, 364, 410, 422, 446, 449, 488, 491
MluCI	AATT	2 cut(s)	19, 208
MnlI	CCTC	8 cut(s)	7, 88, 106, 132, 222, 265, 370, 475
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	301, 309
MvaI	CCWGG	2 cut(s)	301, 309
NdeII	GATC	2 cut(s)	70, 107
NheI	GCTAGC	1 cut(s)	116
OliI	CACNNNNGTG	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	173, 185, 317
PsiI	TTATAA	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	299, 307
PspEI	GGTNACC	1 cut(s)	303
PspGI	CCWGG	2 cut(s)	299, 307
PspPI	GGNCC	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	79
RsaI	GTAC	2 cut(s)	5, 420
RsaNI	GTAC	2 cut(s)	4, 419
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	140
Sau3AI	GATC	2 cut(s)	70, 107
Sau96I	GGNCC	1 cut(s)	443
ScrFI	CCNGG	2 cut(s)	301, 309
SetI	ASST	4 cut(s)	310, 337, 428, 508
SfaNI	GCATC	3 cut(s)	92, 445, 457
SfcI	CTRYAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	19, 208
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	2 cut(s)	117, 264
StyD4I	CCNGG	2 cut(s)	299, 307
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	286
TasI	AATT	2 cut(s)	19, 208
TfiI	GAWTC	3 cut(s)	173, 185, 317
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	2 cut(s)	183, 196
TspDTI	ATGAA	6 cut(s)	114, 264, 285, 411, 447, 489
TspRI	CASTG	2 cut(s)	183, 196
XapI	RAATTY	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	2 cut(s)	117, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.