Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009274

Physical Location & Seq

Genomic Coordinates Forward (+)

9084142 .. 9086512

Gene Structure 2371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1105700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGATTCCTCACAGTCCCAACAGAGAAGAGGAGGATTGGTGTCACTATCACCCTCGCAGACGCCGAGGTCGAGCGACAAGTCGGTGCGAGATCTGCGATCCGGGGATTCGAATTCGACAAACAGGCATGAGAAGGAAAAGGGTGTCAATGTGCAGGTCCTTGTGCGTTGCAGGCCATTGAGTGAAGATGAAATGAGAGTGCATACGCCGGTCGTGATTTCTTGCAATGAGAGTAGAAGAGAAGTTGCTGCAATTCAGAATATAGCTAACAAGCAGATTGATAGAACTTTTGCGTTTGACAAGGTCTTTGGTCCGGCATCCCAACAGAAGGAACTGTATGATCAAGCTGTGGCGCCTATCGTAAATGAAGTTCTTGAGGGATATAACTGCACTATCTTTGCCTATGGTCAGACAGGGACGGGAAAAACATACACTATGGAAGGAGGAGCAAGAAAGAAGAATGGGGAGTTTCCAAGTGATGCGGGTGTTATCCCAAGAGCTGTTAAACAAATTTTTGACATTTTAGAAGCTCAGGTTGCTGAGTATAGCATGAAAGTCACATTTTTAGAGCTGTACAATGAGGAGATAAGTGATCTTTTGGCCCCTGATGAGAACATGAAGTTTGTAGATGACAAATCAAAGAAACCCATAGCTCTCATGGAAGATGGAAAGGGTGGTGTTTTTGTAAGAGGCTTGGAAGAAGAGATAGTGTGCACAGCAAATGAAATTTATAAAATCTTGGAGAAGGGATCGGCAAAAAGGCGTACAGCTGAGACACTTCTCAACAAACAAAGCAGCCGTTCGCACTCAATATTTTCCATCACAATTCACATTAAGGAATGCACTCCAGAGGGCGAAGAAATGATTAAGTGTGGGAAGCTGAATCTTGTAGACCTCGCTGGGTCTGAGAACATTTCACGCTCTGGTGCAAGAGAGGGCAGAGCAAGGGAAGCTGGGGAGATAAATAAAAGCTTACTTACTCTTGGTCGTGTCATTAATACTCTCATTGAGCACTCTGGTCATGTTCCGTATAGGGACAGTAAACTTACAAGATTACTGCGAGACTCCTTAGGAGGAAAAACAAAGACATGCATAATTGCTACTGTGTCACCCCCATCCATTGTTTGGAAGAAACACTCAGCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008574 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0030865 GO:0031122 GO:0032502 GO:0032506 GO:0032989 GO:0032991 GO:0040007 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051301 GO:0060560 GO:0061640 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902410 GO:1902850 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

383

Amino Acids

42.23

Weight (kDa)

8.54

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	50 - 200	1.1e-28	Microtubule binding
Kinesin	PF00225	56 - 372	7.3e-108	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28620 AT2G28620 AT2G28620 AT3G45850 AT3G45850
fragaria_vesca	FvH4_3g34440 FvH4_3g34440
malus_domestica	MD03G1105700.v1.1 MD11G1118200.v1.1
prunus_persica	Prupe.6G088500_v2.0.a1
pyrus_communis	pycom03g08490 pycom11g09910
rosa_chinensis	RchiOBHm_Chr5g0062081
rosa_laevigata	RLG00000035530
rosa_multiflora	Rmu_sc0002296.1_g000013
rosa_roxburghii	Rroxscaffold_1G00018630
rosa_rugosa	Rorug05G0345900 Rorug05G0345900
rosa_samantha	Rh5AG407500 Rh5BG420800 Rh5DG435900
rosa_wichuraiana	Rw5G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AasI	GACNNNNNNGTC	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	1125
AccI	GTMKAC	1 cut(s)	891
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	2 cut(s)	93, 757
AcsI	RAATTY	3 cut(s)	112, 510, 726
AcyI	GRCGYC	2 cut(s)	62, 353
AfaI	GTAC	2 cut(s)	575, 766
AfiI	CCNNNNNNNGG	2 cut(s)	328, 1125
Alw21I	GWGCWC	2 cut(s)	716, 1014
Alw26I	GTCTC	2 cut(s)	767, 1056
Alw44I	GTGCAC	1 cut(s)	712
AlwI	GGATC	2 cut(s)	93, 757
AoxI	GGCC	2 cut(s)	173, 600
ApaLI	GTGCAC	1 cut(s)	712
ApeKI	GCWGC	2 cut(s)	248, 795
ApoI	RAATTY	3 cut(s)	112, 510, 726
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AseI	ATTAAT	1 cut(s)	996
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	3 cut(s)	157, 311, 601
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	42, 1101
AsuII	TTCGAA	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	157, 311
AxyI	CCTNAGG	1 cut(s)	1069
BaeGI	GKGCMC	1 cut(s)	716
BanI	GGYRCC	1 cut(s)	352
Bbv12I	GWGCWC	2 cut(s)	716, 1014
BbvI	GCAGC	2 cut(s)	235, 807
BccI	CCATC	3 cut(s)	659, 827, 1123
BceAI	ACGGC	1 cut(s)	783
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	767, 1056
BfoI	RGCGCY	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	145
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	2 cut(s)	249, 796
BlsI	GCNGC	2 cut(s)	250, 797
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	2 cut(s)	157, 311
BmgT120I	GGNCC	3 cut(s)	157, 311, 601
BmiI	GGNNCC	2 cut(s)	354, 603
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	326, 469
BpmI	CTGGAG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	103
BsaHI	GRCGYC	2 cut(s)	62, 353
BsaJI	CCNNGG	2 cut(s)	65, 102
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 1125
Bse118I	RCCGGY	1 cut(s)	208
Bse21I	CCTNAGG	1 cut(s)	1069
Bse3DI	GCAATG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	65, 102
BseGI	GGATG	2 cut(s)	317, 1115
BseLI	CCNNNNNNNGG	2 cut(s)	328, 1125
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	4 cut(s)	531, 545, 762, 897
BseRI	GAGGAG	3 cut(s)	45, 459, 596
BseSI	GKGCMC	1 cut(s)	716
BseXI	GCAGC	2 cut(s)	235, 807
BseYI	CCCAGC	2 cut(s)	899, 953
BsgI	GTGCAG	2 cut(s)	173, 373
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	175, 602
BshNI	GGYRCC	1 cut(s)	352
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	2 cut(s)	716, 1014
BsiSI	CCGG	3 cut(s)	102, 209, 314
BslFI	GGGAC	2 cut(s)	430, 1049
BslI	CCNNNNNNNGG	2 cut(s)	328, 1125
BsmAI	GTCTC	2 cut(s)	767, 1056
BsmFI	GGGAC	2 cut(s)	430, 1049
BsmI	GAATGC	1 cut(s)	845
BsnI	GGCC	2 cut(s)	175, 602
Bsp119I	TTCGAA	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	716, 1014
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	5 cut(s)	91, 98, 340, 592, 749
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	2 cut(s)	175, 602
BspCNI	CTCAG	4 cut(s)	532, 544, 763, 898
BspLI	GGNNCC	2 cut(s)	354, 603
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	93, 757
BspT104I	TTCGAA	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	208
BsrGI	TGTACA	1 cut(s)	573
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	65, 102
BssMI	GATC	5 cut(s)	91, 98, 340, 592, 749
BssNI	GRCGYC	2 cut(s)	62, 353
Bst4CI	ACNGT	4 cut(s)	15, 336, 1040, 1105
Bst6I	CTCTTC	3 cut(s)	22, 232, 696
BstACI	GRCGYC	2 cut(s)	62, 353
BstAUI	TGTACA	1 cut(s)	573
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	7 cut(s)	531, 540, 771, 906, 1069, 1138, 1146
BstF5I	GGATG	2 cut(s)	317, 1115
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	5 cut(s)	94, 101, 343, 595, 752
BstMAI	GTCTC	2 cut(s)	767, 1056
BstMBI	GATC	5 cut(s)	91, 98, 340, 592, 749
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 172, 536, 950
BstNSI	RCATGY	1 cut(s)	1092
BstSCI	CCNGG	1 cut(s)	101
BstSLI	GKGCMC	1 cut(s)	716
BstV1I	GCAGC	2 cut(s)	235, 807
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	1069
BsuRI	GGCC	2 cut(s)	175, 602
BtsCI	GGATG	2 cut(s)	317, 1115
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	157, 311, 601
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	574, 765
CviAII	CATG	6 cut(s)	128, 550, 616, 658, 1022, 1089
CviQI	GTAC	2 cut(s)	574, 765
DdeI	CTNAG	7 cut(s)	531, 540, 771, 906, 1069, 1138, 1146
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	5 cut(s)	93, 100, 342, 594, 751
DpnII	GATC	5 cut(s)	91, 98, 340, 592, 749
DrdI	GACNNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	67
Eam1104I	CTCTTC	3 cut(s)	22, 232, 696
EarI	CTCTTC	3 cut(s)	22, 232, 696
Eco47I	GGWCC	2 cut(s)	157, 311
Eco81I	CCTNAGG	1 cut(s)	1069
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	1094
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
FaeI	CATG	6 cut(s)	131, 553, 619, 661, 1025, 1092
FaqI	GGGAC	2 cut(s)	430, 1049
FatI	CATG	6 cut(s)	127, 549, 615, 657, 1021, 1088
FauI	CCCGC	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	891
Fnu4HI	GCNGC	2 cut(s)	249, 796
FokI	GGATG	2 cut(s)	304, 1102
Fsp4HI	GCNGC	2 cut(s)	249, 796
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	2 cut(s)	249, 796
GsaI	CCCAGC	2 cut(s)	903, 957
GsuI	CTGGAG	1 cut(s)	831
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	175, 602
HapII	CCGG	3 cut(s)	102, 209, 314
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	355
Hin1I	GRCGYC	2 cut(s)	62, 353
Hin1II	CATG	6 cut(s)	131, 553, 619, 661, 1025, 1092
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HindIII	AAGCTT	1 cut(s)	970
HinfI	GANTC	4 cut(s)	5, 107, 883, 1064
HpaII	CCGG	3 cut(s)	102, 209, 314
HphI	GGTGA	2 cut(s)	42, 1101
Hpy166II	GTNNAC	3 cut(s)	714, 892, 1043
Hpy188I	TCNGA	3 cut(s)	258, 411, 907
Hpy188III	TCNNGA	3 cut(s)	214, 374, 848
Hpy8I	GTNNAC	3 cut(s)	714, 892, 1043
HpyAV	CCTTC	4 cut(s)	127, 322, 434, 739
HpyCH4III	ACNGT	4 cut(s)	15, 336, 1040, 1105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 172, 536, 950
HpyF3I	CTNAG	7 cut(s)	531, 540, 771, 906, 1069, 1138, 1146
Hsp92I	GRCGYC	2 cut(s)	62, 353
Hsp92II	CATG	6 cut(s)	131, 553, 619, 661, 1025, 1092
HspAI	GCGC	1 cut(s)	353
KasI	GGCGCC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	5 cut(s)	91, 98, 340, 592, 749
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	2 cut(s)	235, 807
LweI	GCATC	2 cut(s)	326, 469
MaeIII	GTNAC	3 cut(s)	42, 556, 1107
MalI	GATC	5 cut(s)	93, 100, 342, 594, 751
MboI	GATC	5 cut(s)	91, 98, 340, 592, 749
MboII	GAAGA	9 cut(s)	39, 197, 249, 469, 674, 710, 713, 869, 1141
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	716, 1014
MluCI	AATT	6 cut(s)	112, 252, 510, 726, 825, 1095
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	1058
Mph1103I	ATGCAT	1 cut(s)	1094
MseI	TTAA	4 cut(s)	504, 834, 867, 996
MspA1I	CMGCKG	1 cut(s)	770
MspI	CCGG	3 cut(s)	102, 209, 314
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	845
MwoI	GCNNNNNNNGC	4 cut(s)	94, 172, 536, 950
NarI	GGCGCC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	5 cut(s)	91, 98, 340, 592, 749
NlaIII	CATG	6 cut(s)	131, 553, 619, 661, 1025, 1092
NlaIV	GGNNCC	2 cut(s)	354, 603
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	3 cut(s)	42, 556, 1107
NsiI	ATGCAT	1 cut(s)	1094
NspI	RCATGY	1 cut(s)	1092
NspV	TTCGAA	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	2 cut(s)	62, 68
PctI	GAATGC	1 cut(s)	845
PfeI	GAWTC	3 cut(s)	5, 107, 883
PflFI	GACNNNGTC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	1125
PkrI	GCNGC	2 cut(s)	250, 797
PleI	GAGTC	1 cut(s)	1058
PluTI	GGCGCC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	1058
PpuMI	RGGWCCY	1 cut(s)	157
PshBI	ATTAAT	1 cut(s)	996
PsiI	TTATAA	1 cut(s)	732
Psp5II	RGGWCCY	1 cut(s)	157
PspFI	CCCAGC	2 cut(s)	899, 953
PspN4I	GGNNCC	2 cut(s)	354, 603
PspPI	GGNCC	3 cut(s)	157, 311, 601
PspPPI	RGGWCCY	1 cut(s)	157
PsrI	GAACNNNNNNTAC	2 cut(s)	354, 386
PsuI	RGATCY	1 cut(s)	91
PsyI	GACNNNGTC	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	575, 766
RsaNI	GTAC	2 cut(s)	574, 765
SaqAI	TTAA	4 cut(s)	504, 834, 867, 996
SatI	GCNGC	2 cut(s)	249, 796
Sau3AI	GATC	5 cut(s)	91, 98, 340, 592, 749
Sau96I	GGNCC	3 cut(s)	157, 311, 601
SchI	GAGTC	1 cut(s)	1058
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	2 cut(s)	716, 1014
SfaNI	GCATC	2 cut(s)	326, 469
SfoI	GGCGCC	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	110
SinI	GGWCC	2 cut(s)	157, 311
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	6 cut(s)	112, 252, 510, 726, 825, 1095
SsiI	CCGC	1 cut(s)	482
SspDI	GGCGCC	1 cut(s)	352
SspI	AATATT	1 cut(s)	813
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	4 cut(s)	15, 336, 1040, 1105
TaqI	TCGA	3 cut(s)	71, 110, 116
TasI	AATT	6 cut(s)	112, 252, 510, 726, 825, 1095
TatI	WGTACW	1 cut(s)	573
TfiI	GAWTC	3 cut(s)	5, 107, 883
Tru1I	TTAA	4 cut(s)	504, 834, 867, 996
Tru9I	TTAA	4 cut(s)	504, 834, 867, 996
TseFI	GTSAC	3 cut(s)	42, 556, 1107
TseI	GCWGC	2 cut(s)	248, 795
Tsp45I	GTSAC	3 cut(s)	42, 556, 1107
TspDTI	ATGAA	5 cut(s)	204, 381, 566, 632, 738
TspGWI	ACGGA	1 cut(s)	1017
Tth111I	GACNNNGTC	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	1125
VneI	GTGCAC	1 cut(s)	712
VpaK11BI	GGWCC	2 cut(s)	157, 311
VspI	ATTAAT	1 cut(s)	996
XapI	RAATTY	3 cut(s)	112, 510, 726
XceI	RCATGY	1 cut(s)	1092
XcmI	CCANNNNNNNNNTGG	2 cut(s)	655, 1122
XmiI	GTMKAC	1 cut(s)	891
Zsp2I	ATGCAT	1 cut(s)	1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.