Rorug05G0345900
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
42647411 .. 42652861
5451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0345900.1

Sequence Viewer

Length: 297 bp
ATGTCCTCATCAGACTGTCATGTCACTACTCACGACTCATTCGAGATCAAGGGGGGAACCACCAGGCACGGACACAAGGGTGGGCTGAGCAAAACTAATAGACAAGACTCTCCTTTTCTCCCTTTCTCTGTACTCTCGTCCTCACCTCTGCCCACTGCCCAGTTCTGCGTTTCTCAAGTTCATACTCTCACCTCTCTCTACCAAGTCACTCTATCTCCTCTCCTCAATAATCTGCTCTCATCTCTCAACCTTATTCAGTATCCTAAGGAGAACGCGCTCCACACGCCTAAACCCTAG

Protein Analysis

98

Amino Acids

10.69

Weight (kDa)

8.72

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AccII CGCG 1 cut(s) 275
AfaI GTAC 1 cut(s) 132
AjnI CCWGG 1 cut(s) 62
AleI CACNNNNGTG 1 cut(s) 78
AspLEI GCGC 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 135, 181
AxyI CCTNAGG 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 64
BciVI GTATCC 1 cut(s) 270
BfaI CTAG 1 cut(s) 295
BfuI GTATCC 1 cut(s) 270
BlpI GCTNAGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
Bpu1102I GCTNAGC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bse1I ACTGG 1 cut(s) 160
Bse21I CCTNAGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 2 cut(s) 207, 212
Bsh1236I CGCG 1 cut(s) 275
Bsp143I GATC 1 cut(s) 45
Bsp1720I GCTNAGC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 160
BssMI GATC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 86, 264
BstFNI CGCG 1 cut(s) 275
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstUI CGCG 1 cut(s) 275
Bsu36I CCTNAGG 1 cut(s) 264
BsuI GTATCC 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
CfoI GCGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 131
CviAII CATG 1 cut(s) 20
CviJI RGCY 1 cut(s) 85
CviKI_1 RGCY 1 cut(s) 85
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 2 cut(s) 86, 264
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
Eco81I CCTNAGG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 62
FaeI CATG 1 cut(s) 23
FaiI YATR 2 cut(s) 21, 183
FatI CATG 1 cut(s) 19
FspBI CTAG 1 cut(s) 295
GlaI GCGC 1 cut(s) 276
HhaI GCGC 1 cut(s) 277
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 2 cut(s) 35, 107
HphI GGTGA 2 cut(s) 135, 181
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 32, 43
HpyCH4III ACNGT 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 86, 264
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 1 cut(s) 275
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 3 cut(s) 49, 76, 173
MaeI CTAG 1 cut(s) 295
MaeIII GTNAC 2 cut(s) 22, 205
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MlyI GAGTC 2 cut(s) 29, 101
MnlI CCTC 6 cut(s) 16, 151, 156, 202, 228, 233
MslI CAYNNNNRTG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 2 cut(s) 22, 205
OliI CACNNNNGTG 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PleI GAGTC 2 cut(s) 29, 101
PpsI GAGTC 2 cut(s) 29, 101
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 58
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 78
Sau3AI GATC 1 cut(s) 45
SchI GAGTC 2 cut(s) 29, 101
ScrFI CCNGG 1 cut(s) 64
SetI ASST 3 cut(s) 148, 194, 252
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
SspMI CTAG 1 cut(s) 295
StyD4I CCNGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 42
TatI WGTACW 1 cut(s) 130
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 2 cut(s) 22, 205
Tsp45I GTSAC 2 cut(s) 22, 205
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 160
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.