Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009270

Physical Location & Seq

Genomic Coordinates Forward (+)

12168354 .. 12172043

Gene Structure 3690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1126800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGAAGTGAAAGAATGGCCAAGAGATTGTCTTTGGGTGGCATAATGAGGAAGAAGCTATCGGACATCACCAATTTGCAGACTGCGAAACCGATGAGCGAGGATGAAAAGCCCCTGGAAGATTGTCCGACTGATAAGGACTACATTGAGCAGCTCAGGAGGGAAAGAATGACTTTGATCAGACTTGTCGCCGAAAGGACTAAAATCGTTGAATTAAGTGGAGCTGAGTTGCAGAAACTGCGAATTAGTCTCCAGAAATTGCAGCAACAAAATTTGAGTCTTGCACAATCGAACAGCAGGATGTTAGCAGAGCTTAATTTAGGAAGAGAGAAGGTAAAAACACTTCAGCATGAACTTGTATGCAAGAATGCTTTACTTAAAGCAAAGACTCTAGAAATAGAGGGAAAAGAAGAGTTCAAACGTCAAAATTCTGCCTCTCAGACTCAGGTATCTAAGATCAAGGAAGCAGAGGAGATATCTCTGCATAAAGCTGATAATGATGGCAAAGCATGTAATCTCAACAAAAGACGTGCAACAAGAAGTCGATTAGGCGCTTCTACTACATGCCAAAAGGTTGAAAATAAAGAGAAGGCTGAAAATAAAAGGCGGCGTTTGAGGAGGCAATCTGCTAGATTTATTTCCCAGACAGAGAACCTGTTTGAAATAGAGGATGTCAAATTACCAGTAAATCACACACCAGACAGTCCGATGCGTAGTAGCAGTCCCACTCCATTGATTTCATCTACAAGAAAAGAAGGGGGAGAAGATAATTGTGCCCCAAGGCGGTCTTCAGTTGGAAGACCGCTGCGCAAAGCAGCTGAGAAGGTCAAGTCCTACAAAGAAGTTCCAATAATAGTCAAAATGCGGAGATCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051276 GO:0051321 GO:0061983 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

293

Amino Acids

33.39

Weight (kDa)

10.01

Isoelectric Point (pI)

74.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	266 - 290	1.9e-07	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44960 AT3G44960 AT3G44960 AT3G44960 AT3G44960
fragaria_vesca	FvH4_3g30760 FvH4_3g30760
malus_domestica	MD03G1126800.v1.1 MD11G1147400.v1.1
prunus_persica	Prupe.6G111900_v2.0.a1 Prupe.6G111900_v2.0.a1
pyrus_communis	pycom11g12070
rosa_chinensis	RchiOBHm_Chr5g0056951
rosa_laevigata	RLG00000035142
rosa_multiflora	Rmu_sc0002035.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023220
rosa_rugosa	Rorug05G0304600
rosa_samantha	Rh5AG374000 Rh5BG385100 Rh5CG408300 Rh5DG398400
rosa_wichuraiana	Rw5G035210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	809
AciI	CCGC	4 cut(s)	607, 784, 803, 865
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	271, 427
AcuI	CTGAAG	2 cut(s)	329, 774
AfiI	CCNNNNNNNGG	1 cut(s)	783
AgsI	TTSAA	4 cut(s)	212, 418, 578, 662
AjiI	CACGTC	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	772, 804
AluBI	AGCT	6 cut(s)	58, 154, 224, 313, 491, 818
AluI	AGCT	6 cut(s)	58, 154, 224, 313, 491, 818
Alw26I	GTCTC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	4 cut(s)	151, 262, 805, 815
ApoI	RAATTY	2 cut(s)	271, 427
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
AspLEI	GCGC	2 cut(s)	554, 810
AsuHPI	GGTGA	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	778
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BalI	TGGCCA	1 cut(s)	20
BarI	GAAGNNNNNNTAC	2 cut(s)	327, 359
BbsI	GAAGAC	2 cut(s)	780, 805
BbvI	GCAGC	4 cut(s)	163, 274, 792, 827
BccI	CCATC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	116
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	392, 630
BfoI	RGCGCY	1 cut(s)	555
BisI	GCNGC	5 cut(s)	152, 263, 608, 806, 816
BlsI	GCNGC	5 cut(s)	153, 264, 609, 807, 817
Bme1390I	CCNGG	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	530
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	699
BpiI	GAAGAC	2 cut(s)	780, 805
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	114, 779
Bsc4I	CCNNNNNNNGG	1 cut(s)	783
Bse1I	ACTGG	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	114, 779
BseGI	GGATG	3 cut(s)	109, 306, 676
BseLI	CCNNNNNNNGG	1 cut(s)	783
BseMII	CTCAG	5 cut(s)	169, 216, 452, 458, 810
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	2 cut(s)	485, 631
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	4 cut(s)	163, 274, 792, 827
BshFI	GGCC	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	1 cut(s)	783
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	708
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp143I	GATC	3 cut(s)	177, 456, 869
BspACI	CCGC	4 cut(s)	607, 784, 803, 865
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	5 cut(s)	168, 217, 451, 457, 811
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	2 cut(s)	114, 779
BssMI	GATC	3 cut(s)	177, 456, 869
BssT1I	CCWWGG	1 cut(s)	779
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	704
Bst6I	CTCTTC	2 cut(s)	319, 405
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstDEI	CTNAG	6 cut(s)	155, 225, 438, 444, 453, 819
BstF5I	GGATG	3 cut(s)	109, 306, 676
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	554, 810
BstKTI	GATC	3 cut(s)	180, 459, 872
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	3 cut(s)	177, 456, 869
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	2 cut(s)	513, 567
BstSCI	CCNGG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	778
BstV1I	GCAGC	4 cut(s)	163, 274, 792, 827
BstV2I	GAAGAC	2 cut(s)	780, 805
BsuRI	GGCC	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	530
BtsCI	GGATG	3 cut(s)	109, 306, 676
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	2 cut(s)	554, 810
CviAII	CATG	3 cut(s)	350, 510, 564
CviJI	RGCY	9 cut(s)	20, 58, 112, 154, 224, 313, 491, 593, 818
CviKI_1	RGCY	9 cut(s)	20, 58, 112, 154, 224, 313, 491, 593, 818
DdeI	CTNAG	6 cut(s)	155, 225, 438, 444, 453, 819
DpnI	GATC	3 cut(s)	179, 458, 871
DpnII	GATC	3 cut(s)	177, 456, 869
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	319, 405
EarI	CTCTTC	2 cut(s)	319, 405
Eco130I	CCWWGG	1 cut(s)	779
Eco32I	GATATC	1 cut(s)	477
Eco57I	CTGAAG	2 cut(s)	329, 774
EcoRII	CCWGG	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	779
FaeI	CATG	3 cut(s)	353, 513, 567
FaiI	YATR	6 cut(s)	44, 351, 361, 486, 511, 565
FalI	AAGNNNNNCTT	4 cut(s)	157, 189, 772, 804
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	3 cut(s)	349, 509, 563
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	5 cut(s)	152, 263, 608, 806, 816
FokI	GGATG	3 cut(s)	116, 313, 683
Fsp4HI	GCNGC	5 cut(s)	152, 263, 608, 806, 816
FspBI	CTAG	2 cut(s)	392, 630
FspI	TGCGCA	1 cut(s)	809
GlaI	GCGC	2 cut(s)	553, 809
GluI	GCNGC	5 cut(s)	152, 263, 608, 806, 816
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	20
HhaI	GCGC	2 cut(s)	554, 810
Hin1II	CATG	3 cut(s)	353, 513, 567
Hin6I	GCGC	2 cut(s)	552, 808
HinP1I	GCGC	2 cut(s)	552, 808
HinfI	GANTC	3 cut(s)	277, 388, 442
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	6 cut(s)	64, 129, 182, 441, 708, 874
Hpy188III	TCNNGA	3 cut(s)	157, 253, 392
HpyAV	CCTTC	4 cut(s)	325, 583, 749, 817
HpyCH4III	ACNGT	1 cut(s)	704
HpyCH4IV	ACGT	2 cut(s)	421, 529
HpyCH4V	TGCA	7 cut(s)	79, 232, 262, 284, 363, 484, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	6 cut(s)	155, 225, 438, 444, 453, 819
HpySE526I	ACGT	2 cut(s)	421, 529
Hsp92II	CATG	3 cut(s)	353, 513, 567
HspAI	GCGC	2 cut(s)	552, 808
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	177, 456, 869
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	4 cut(s)	163, 274, 792, 827
LweI	GCATC	1 cut(s)	699
MaeI	CTAG	2 cut(s)	392, 630
MaeII	ACGT	2 cut(s)	421, 529
MalI	GATC	3 cut(s)	179, 458, 871
MboI	GATC	3 cut(s)	177, 456, 869
MboII	GAAGA	7 cut(s)	64, 131, 336, 422, 776, 780, 810
MhlI	GDGCHC	1 cut(s)	778
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	9 cut(s)	73, 212, 243, 257, 271, 316, 427, 677, 769
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	3 cut(s)	286, 382, 436
MmeI	TCCRAC	2 cut(s)	152, 775
MnlI	CCTC	9 cut(s)	42, 94, 153, 394, 445, 463, 609, 612, 661
Mox20I	TGGCCA	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	3 cut(s)	215, 315, 378
Msp20I	TGGCCA	1 cut(s)	20
MspA1I	CMGCKG	2 cut(s)	805, 818
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeII	GATC	3 cut(s)	177, 456, 869
NlaIII	CATG	3 cut(s)	353, 513, 567
NsbI	TGCGCA	1 cut(s)	809
NspI	RCATGY	2 cut(s)	513, 567
PctI	GAATGC	1 cut(s)	373
PkrI	GCNGC	5 cut(s)	153, 264, 609, 807, 817
PleI	GAGTC	3 cut(s)	285, 382, 436
PpsI	GAGTC	3 cut(s)	285, 382, 436
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PstNI	CAGNNNCTG	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	818
SaqAI	TTAA	3 cut(s)	215, 315, 378
SatI	GCNGC	5 cut(s)	152, 263, 608, 806, 816
Sau3AI	GATC	3 cut(s)	177, 456, 869
SchI	GAGTC	3 cut(s)	286, 382, 436
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	778
SfaNI	GCATC	1 cut(s)	699
Sse9I	AATT	9 cut(s)	73, 212, 243, 257, 271, 316, 427, 677, 769
SsiI	CCGC	4 cut(s)	607, 784, 803, 865
SspMI	CTAG	2 cut(s)	392, 630
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	1 cut(s)	704
TaiI	ACGT	2 cut(s)	424, 532
TaqI	TCGA	2 cut(s)	290, 544
TasI	AATT	9 cut(s)	73, 212, 243, 257, 271, 316, 427, 677, 769
TauI	GCSGC	1 cut(s)	610
Tru1I	TTAA	3 cut(s)	215, 315, 378
Tru9I	TTAA	3 cut(s)	215, 315, 378
TseI	GCWGC	4 cut(s)	151, 262, 805, 815
TspDTI	ATGAA	3 cut(s)	120, 366, 729
XapI	RAATTY	2 cut(s)	271, 427
XbaI	TCTAGA	1 cut(s)	391
XceI	RCATGY	2 cut(s)	513, 567
XspI	CTAG	2 cut(s)	392, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.