Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009270

Physical Location & Seq

Genomic Coordinates Reverse (-)

61568289 .. 61571541

Gene Structure 3253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035142

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGCACAAGATCGTCTTTCAGCACCGTAATGCGGCCGAAGCTCGCTGACGTCACCAACTTGCCGGCTCCTCCGAGAATTGAAAGGCCGCCTGAAATTTCCATGGGTGATAAGGACCGTGTTGAACAGCTCATGAGGGAAAGAATGGCTTTGATCAAACTCGTCAGCGAAAGGAATAAAATCATTGAATTGAGCGGAGCTGAGTTGCAGAAACTGCGAGTTAGTGTTCAGAAATTGCAGCTACAAAATTGGAATCTTGCTCGATCAAACAGCGTAATGTTAGCGGAGCTTAATTCAGGAAGAGACAAGGTAAAAACACTACAGCATGACCTTCTATGCAAGGAGGCTTTACTTAAGGCAAAGAATTTTGAAATGCAGGGAAAATCAGAGATGAAATGTCAAAATGCTGGCTCTAAGTTCAAGGAAGCAGAGGAGGCAACTTTGCATGAAGCGGATAATGATGACAAACCACGTATTGGCAACAAGAGGCGTGCAGCAAGAAGTCAATCTCTGGGTGCTTCTACTAAATGCCAAAAGGTAGAACAATCCCTCACTTTACAGGGAAAAGAAGAGATGAAATGTCAAAATACTGGCCATCAGCTCAAGGAAGGAGAGGAGCCAGCTTTGCAGGAAGCTACTAAGGATGACAAACCATGTGTTGGCAACAAAATGCGTGCTACAAGAAGTCAATTTTTGGGCACTTCTACTACATGCCAAAACATTGAACAGAAAGACAAGGTTGAGAATAGAAGGCGGAGTTTGAGGAGGCAGTCTTCTAGATTTAAATCCCATGAGGAAGAACAGACAGAAAACTTGTTTGAGATAGAAGAAGCCAAATTTCCGGAAAATCCAATGCTTGAGGATGATCCCATTCCCTCCATTTCATTTACCAAGCAAGAAGAGAAAGAAGATAGCTGCACTGCAAAGAGTGAAGGAGTATCACAAAGATCTTCAATTGGAAGACCATTGTGCAAGGCAGTTAAGAAGGATACCGAATTTCCCGAAAATTCAATCCCTAATGGCGATCCCACTCCCTTAATTTTATCTACCAAGAAAGAGAGAGAAGAAAGCGGTGCCCCAAAGAGTGAAGGAGTATCCCAGAGATCTTCAATTGCAAGACCATTGCGGAAAGCAGTTGAGAAGGTTCAGTCCTACAAAGAACCTCCACTCCATGTCAAAATGCGGAGAACAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051276 GO:0051321 GO:0061983 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

399

Amino Acids

45.03

Weight (kDa)

9.15

Isoelectric Point (pI)

65.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	372 - 396	5.9e-10	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44960 AT3G44960 AT3G44960 AT3G44960 AT3G44960
fragaria_vesca	FvH4_3g30760 FvH4_3g30760
malus_domestica	MD03G1126800.v1.1 MD11G1147400.v1.1
prunus_persica	Prupe.6G111900_v2.0.a1 Prupe.6G111900_v2.0.a1
pyrus_communis	pycom11g12070
rosa_chinensis	RchiOBHm_Chr5g0056951
rosa_laevigata	RLG00000035142
rosa_multiflora	Rmu_sc0002035.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023220
rosa_rugosa	Rorug05G0304600
rosa_samantha	Rh5AG374000 Rh5BG385100 Rh5CG408300 Rh5DG398400
rosa_wichuraiana	Rw5G035210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	1073
AccB7I	CCANNNNNTGG	2 cut(s)	476, 659
AccBSI	CCGCTC	1 cut(s)	195
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	9 cut(s)	34, 89, 195, 284, 452, 754, 1071, 1126, 1183
AclWI	GGATC	2 cut(s)	860, 1019
AcoI	YGGCCR	2 cut(s)	35, 592
AcsI	RAATTY	5 cut(s)	96, 364, 836, 995, 1006
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	3 cut(s)	33, 476, 659
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	9 cut(s)	83, 125, 188, 371, 421, 725, 954, 1011, 1110
AloI	GAACNNNNNNTCC	2 cut(s)	1152, 1184
AluBI	AGCT	9 cut(s)	43, 130, 200, 241, 289, 601, 623, 635, 915
AluI	AGCT	9 cut(s)	43, 130, 200, 241, 289, 601, 623, 635, 915
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	860, 1019
AlwNI	CAGNNNCTG	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	3 cut(s)	35, 86, 592
ApeKI	GCWGC	3 cut(s)	238, 494, 915
ApoI	RAATTY	5 cut(s)	96, 364, 836, 995, 1006
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	46, 119
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	3 cut(s)	8, 701, 1078
BalI	TGGCCA	1 cut(s)	594
BanI	GGYRCC	1 cut(s)	1073
BbsI	GAAGAC	2 cut(s)	765, 967
BbvI	GCAGC	3 cut(s)	250, 506, 902
BccI	CCATC	1 cut(s)	603
BciVI	GTATCC	2 cut(s)	982, 1105
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	777
BfmI	CTRYAG	1 cut(s)	320
BfrI	CTTAAG	1 cut(s)	353
BfuI	GTATCC	2 cut(s)	982, 1105
BglII	AGATCT	2 cut(s)	947, 1103
BisI	GCNGC	5 cut(s)	35, 89, 239, 495, 916
BlsI	GCNGC	5 cut(s)	36, 90, 240, 496, 917
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	3 cut(s)	69, 618, 1075
BpiI	GAAGAC	2 cut(s)	765, 967
BpuEI	CTTGAG	2 cut(s)	587, 878
BsaAI	YACGTR	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	784
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	841
BsaXI	ACNNNNNCTCC	2 cut(s)	1152, 1182
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 476, 659
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	1121
Bse8I	GATNNNNATC	1 cut(s)	784
BseAI	TCCGGA	1 cut(s)	841
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	649, 868
BseJI	GATNNNNATC	1 cut(s)	784
BseLI	CCNNNNNNNGG	3 cut(s)	33, 476, 659
BseMI	GCAATG	1 cut(s)	1121
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	4 cut(s)	60, 446, 629, 778
BseSI	GKGCMC	3 cut(s)	8, 701, 1078
BseX3I	CGGCCG	1 cut(s)	35
BseXI	GCAGC	3 cut(s)	250, 506, 902
BsgI	GTGCAG	2 cut(s)	513, 901
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	37, 88, 594
BshNI	GGYRCC	1 cut(s)	1073
BsiEI	CGRYCG	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	65, 842
BslI	CCNNNNNNNGG	3 cut(s)	33, 476, 659
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	3 cut(s)	37, 88, 594
Bsp1286I	GDGCHC	3 cut(s)	8, 701, 1078
Bsp13I	TCCGGA	1 cut(s)	841
Bsp143I	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	9 cut(s)	34, 89, 195, 284, 452, 754, 1071, 1126, 1183
BspANI	GGCC	3 cut(s)	37, 88, 594
BspCNI	CTCAG	1 cut(s)	193
BspEI	TCCGGA	1 cut(s)	841
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	69, 618, 1075
BspPI	GGATC	2 cut(s)	860, 1019
BspT107I	GGYRCC	1 cut(s)	1073
BspTI	CTTAAG	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	1121
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	595
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	28, 119
Bst6I	CTCTTC	3 cut(s)	295, 564, 894
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	6 cut(s)	45, 66, 409, 492, 621, 675
BstDEI	CTNAG	3 cut(s)	201, 414, 639
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	649, 868
BstKTI	GATC	7 cut(s)	14, 156, 266, 868, 950, 1027, 1106
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 214, 434, 625
BstNSI	RCATGY	1 cut(s)	714
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	3 cut(s)	8, 701, 1078
BstV1I	GCAGC	3 cut(s)	250, 506, 902
BstV2I	GAAGAC	2 cut(s)	765, 967
BstX2I	RGATCY	2 cut(s)	947, 1103
BstYI	RGATCY	2 cut(s)	947, 1103
BstZI	CGGCCG	1 cut(s)	35
BsuI	GTATCC	2 cut(s)	982, 1105
BsuRI	GGCC	3 cut(s)	37, 88, 594
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	649, 868
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	1 cut(s)	918
Cac8I	GCNNGC	6 cut(s)	45, 66, 409, 492, 621, 675
CaiI	CAGNNNCTG	1 cut(s)	214
CciI	TCATGA	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	115
CviAII	CATG	8 cut(s)	103, 133, 326, 446, 654, 711, 791, 1172
DdeI	CTNAG	3 cut(s)	201, 414, 639
DpnI	GATC	7 cut(s)	13, 155, 265, 867, 949, 1026, 1105
DpnII	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
DraI	TTTAAA	1 cut(s)	784
EaeI	YGGCCR	2 cut(s)	35, 592
EagI	CGGCCG	1 cut(s)	35
Eam1104I	CTCTTC	3 cut(s)	295, 564, 894
EarI	CTCTTC	3 cut(s)	295, 564, 894
EciI	GGCGGA	1 cut(s)	769
EclXI	CGGCCG	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1175
FaiI	YATR	9 cut(s)	104, 134, 327, 337, 447, 655, 712, 792, 1173
FalI	AAGNNNNNCTT	3 cut(s)	33, 133, 165
FatI	CATG	8 cut(s)	102, 132, 325, 445, 653, 710, 790, 1171
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	5 cut(s)	35, 89, 239, 495, 916
FokI	GGATG	2 cut(s)	656, 875
Fsp4HI	GCNGC	5 cut(s)	35, 89, 239, 495, 916
FspBI	CTAG	1 cut(s)	777
GluI	GCNGC	5 cut(s)	35, 89, 239, 495, 916
HaeIII	GGCC	3 cut(s)	37, 88, 594
HapII	CCGG	2 cut(s)	65, 842
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1175
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	65, 842
HphI	GGTGA	2 cut(s)	46, 119
Hpy188I	TCNGA	3 cut(s)	75, 231, 388
Hpy188III	TCNNGA	5 cut(s)	133, 297, 777, 842, 1001
HpyAV	CCTTC	7 cut(s)	341, 602, 744, 926, 979, 1082, 1135
HpyCH4III	ACNGT	2 cut(s)	28, 119
HpyCH4IV	ACGT	2 cut(s)	51, 472
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 214, 434, 625
HpyF3I	CTNAG	3 cut(s)	201, 414, 639
HpySE526I	ACGT	2 cut(s)	51, 472
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1175
Kpn2I	TCCGGA	1 cut(s)	841
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
LmnI	GCTCC	4 cut(s)	73, 197, 286, 616
Lsp1109I	GCAGC	3 cut(s)	250, 506, 902
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	2 cut(s)	51, 472
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	7 cut(s)	13, 155, 265, 867, 949, 1026, 1105
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
MfeI	CAATTG	2 cut(s)	954, 1110
MflI	RGATCY	2 cut(s)	947, 1103
MhlI	GDGCHC	3 cut(s)	8, 701, 1078
MlsI	TGGCCA	1 cut(s)	594
MluNI	TGGCCA	1 cut(s)	594
Mox20I	TGGCCA	1 cut(s)	594
MroI	TCCGGA	1 cut(s)	841
MroNI	GCCGGC	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	5 cut(s)	291, 354, 783, 981, 1037
MslI	CAYNNNNRTG	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	594
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	2 cut(s)	65, 842
MunI	CAATTG	2 cut(s)	954, 1110
MwoI	GCNNNNNNNGC	4 cut(s)	40, 214, 434, 625
NaeI	GCCGGC	1 cut(s)	66
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1175
NlaIV	GGNNCC	3 cut(s)	69, 618, 1075
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	714
PagI	TCATGA	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	253
PflMI	CCANNNNNTGG	2 cut(s)	476, 659
PkrI	GCNGC	5 cut(s)	36, 90, 240, 496, 917
Ppu21I	YACGTR	1 cut(s)	473
PspN4I	GGNNCC	3 cut(s)	69, 618, 1075
PspPI	GGNCC	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	947, 1103
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	5 cut(s)	291, 354, 783, 981, 1037
SatI	GCNGC	5 cut(s)	35, 89, 239, 495, 916
Sau3AI	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
Sau96I	GGNCC	1 cut(s)	115
SduI	GDGCHC	3 cut(s)	8, 701, 1078
SfcI	CTRYAG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	115
SmiI	ATTTAAAT	1 cut(s)	784
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	3 cut(s)	353, 602, 857
SmoI	CTYRAG	3 cut(s)	353, 602, 857
SsiI	CCGC	9 cut(s)	34, 89, 195, 284, 452, 754, 1071, 1126, 1183
SspMI	CTAG	1 cut(s)	777
StyI	CCWWGG	1 cut(s)	102
SwaI	ATTTAAAT	1 cut(s)	784
TaaI	ACNGT	2 cut(s)	28, 119
TaiI	ACGT	2 cut(s)	54, 475
TaqI	TCGA	1 cut(s)	262
TauI	GCSGC	2 cut(s)	37, 91
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	5 cut(s)	291, 354, 783, 981, 1037
Tru9I	TTAA	5 cut(s)	291, 354, 783, 981, 1037
TscAI	CASTG	1 cut(s)	925
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	3 cut(s)	238, 494, 915
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	4 cut(s)	407, 462, 590, 873
TspRI	CASTG	1 cut(s)	925
Van91I	CCANNNNNTGG	2 cut(s)	476, 659
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	5 cut(s)	96, 364, 836, 995, 1006
XbaI	TCTAGA	1 cut(s)	776
XceI	RCATGY	1 cut(s)	714
XspI	CTAG	1 cut(s)	777
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.