Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009270

Physical Location & Seq

Genomic Coordinates Reverse (-)

61439304 .. 61443567

Gene Structure 4264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG385100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCTGGCTCTAAGTTCAAGGAAGCAGAGGAGGCAACTTTGCATGAAGCGGATAATGATGACAAACCACGTATTGGCAACAAGAGGCGTGCAACAAGAAGTCAATGTAGACTTTGATGATCTGATTTTGTTGTCTGTGTTGTTTGCCTTTTCCCTACCTTTTGCATCCTCCATGTTAACATATGCACAATTTCTTGCAGCTCTGGGAGCTTCTACTAAATGCCAAAAGGTAGAACAATCCCTCACTTTACAGGGAAAAGAAGAGTTGAAATGTCAAAATACTGGCCGTCAGCTCAAGGAAGGAGAGGAGCCAGCTTTGCAGGAAGCTACTAAGGATGACAAACCATGTGTTGGCAACAAAATGCGTGCTACAAGAAGTCAATCTTTGGGCACTTCTACTACATGCCAAAACATTGAACAGAAAGACAAGGTTGAGAATAGGAGGCGGAGTGTGAGGAGGCAGTCTTCTAGATTTAAATCCCATGAGGAAGAACAGACAGAAAACTTGTTTGAGATAGAAGAAGCTAAATTTCCGGAAAATCCAATGCTTGAGGATGATCCCATTCCCTCCATTTCATCTACCAAGCAAGAAGAGAAAGAAGATAGCTGCGCTGCAAAGAGTGAAGGAGTATCACAAAGATCTTCAATTGGAAGACCATTGTGCAAGGCAGTTAAGAAGGATACCAAATTTCCCGAAAATTCAATCCCTAATGGCGATCCCACTCCCTTAATTTTATCTACCAAGAAAGAGAGAGAAGAAAGCGGTGCCCCAAAGAGTGAAGGAGTATCACAGAGATCTTCAATTGCAAGACCATTGCGGAAAGCAGTTGAGAAGGTTCAGTCCTACAAAGAACCTCCACTCCATGTCAAAATGCGGAGAACAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051276 GO:0051321 GO:0061983 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

295

Amino Acids

33.23

Weight (kDa)

9.07

Isoelectric Point (pI)

74.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	269 - 293	4e-10	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44960 AT3G44960 AT3G44960 AT3G44960 AT3G44960
fragaria_vesca	FvH4_3g30760 FvH4_3g30760
malus_domestica	MD03G1126800.v1.1 MD11G1147400.v1.1
prunus_persica	Prupe.6G111900_v2.0.a1 Prupe.6G111900_v2.0.a1
pyrus_communis	pycom11g12070
rosa_chinensis	RchiOBHm_Chr5g0056951
rosa_laevigata	RLG00000035142
rosa_multiflora	Rmu_sc0002035.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023220
rosa_rugosa	Rorug05G0304600
rosa_samantha	Rh5AG374000 Rh5BG385100 Rh5CG408300 Rh5DG398400
rosa_wichuraiana	Rw5G035210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	764
AccB7I	CCANNNNNTGG	2 cut(s)	73, 350
AccI	GTMKAC	1 cut(s)	108
AccIII	TCCGGA	1 cut(s)	532
AciI	CCGC	5 cut(s)	49, 445, 762, 817, 874
AclWI	GGATC	2 cut(s)	551, 710
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	3 cut(s)	527, 686, 697
AfiI	CCNNNNNNNGG	2 cut(s)	73, 350
AgsI	TTSAA	6 cut(s)	18, 268, 416, 645, 702, 801
AloI	GAACNNNNNNTCC	2 cut(s)	843, 875
AluBI	AGCT	7 cut(s)	200, 209, 292, 314, 326, 524, 606
AluI	AGCT	7 cut(s)	200, 209, 292, 314, 326, 524, 606
AlwI	GGATC	2 cut(s)	551, 710
Aor13HI	TCCGGA	1 cut(s)	532
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	3 cut(s)	197, 606, 611
ApoI	RAATTY	3 cut(s)	527, 686, 697
AspLEI	GCGC	1 cut(s)	611
BaeGI	GKGCMC	2 cut(s)	392, 769
BanI	GGYRCC	1 cut(s)	764
BbsI	GAAGAC	2 cut(s)	456, 658
BbvI	GCAGC	3 cut(s)	209, 593, 598
BceAI	ACGGC	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	673
BfaI	CTAG	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	673
BglII	AGATCT	2 cut(s)	638, 794
BisI	GCNGC	3 cut(s)	198, 607, 612
BlsI	GCNGC	3 cut(s)	199, 608, 613
BmiI	GGNNCC	2 cut(s)	309, 766
BmsI	GCATC	1 cut(s)	173
BpiI	GAAGAC	2 cut(s)	456, 658
BpuEI	CTTGAG	2 cut(s)	278, 569
BsaAI	YACGTR	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	532
BsaXI	ACNNNNNCTCC	4 cut(s)	433, 463, 843, 873
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 350
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	812
Bse8I	GATNNNNATC	1 cut(s)	475
BseAI	TCCGGA	1 cut(s)	532
BseGI	GGATG	3 cut(s)	164, 340, 559
BseJI	GATNNNNATC	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	73, 350
BseMI	GCAATG	1 cut(s)	812
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	3 cut(s)	43, 320, 469
BseSI	GKGCMC	2 cut(s)	392, 769
BseXI	GCAGC	3 cut(s)	209, 593, 598
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	764
BsiSI	CCGG	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	73, 350
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	392, 769
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	5 cut(s)	118, 556, 638, 715, 794
BspACI	CCGC	5 cut(s)	49, 445, 762, 817, 874
BspANI	GGCC	1 cut(s)	285
BspEI	TCCGGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	309, 766
BspPI	GGATC	2 cut(s)	551, 710
BspT107I	GGYRCC	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	812
BsrI	ACTGG	1 cut(s)	286
BssMI	GATC	5 cut(s)	118, 556, 638, 715, 794
Bst6I	CTCTTC	2 cut(s)	255, 585
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	4 cut(s)	6, 89, 312, 366
BstDEI	CTNAG	2 cut(s)	11, 330
BstF5I	GGATG	3 cut(s)	164, 340, 559
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	5 cut(s)	121, 559, 641, 718, 797
BstMBI	GATC	5 cut(s)	118, 556, 638, 715, 794
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 206, 316
BstNSI	RCATGY	1 cut(s)	405
BstSLI	GKGCMC	2 cut(s)	392, 769
BstV1I	GCAGC	3 cut(s)	209, 593, 598
BstV2I	GAAGAC	2 cut(s)	456, 658
BstX2I	RGATCY	2 cut(s)	638, 794
BstYI	RGATCY	2 cut(s)	638, 794
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	164, 340, 559
Cac8I	GCNNGC	4 cut(s)	6, 89, 312, 366
CfoI	GCGC	1 cut(s)	611
CviAII	CATG	6 cut(s)	43, 172, 345, 402, 482, 863
DdeI	CTNAG	2 cut(s)	11, 330
DpnI	GATC	5 cut(s)	120, 558, 640, 717, 796
DpnII	GATC	5 cut(s)	118, 556, 638, 715, 794
DraI	TTTAAA	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	255, 585
EarI	CTCTTC	2 cut(s)	255, 585
EciI	GGCGGA	1 cut(s)	460
FaeI	CATG	6 cut(s)	46, 175, 348, 405, 485, 866
FaiI	YATR	8 cut(s)	44, 173, 181, 183, 346, 403, 483, 864
FalI	AAGNNNNNCTT	2 cut(s)	367, 399
FatI	CATG	6 cut(s)	42, 171, 344, 401, 481, 862
FauNDI	CATATG	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	198, 607, 612
FokI	GGATG	3 cut(s)	151, 347, 566
Fsp4HI	GCNGC	3 cut(s)	198, 607, 612
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	3 cut(s)	198, 607, 612
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	1 cut(s)	533
HhaI	GCGC	1 cut(s)	611
Hin1II	CATG	6 cut(s)	46, 175, 348, 405, 485, 866
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HpaI	GTTAAC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	533
Hpy166II	GTNNAC	2 cut(s)	109, 177
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	3 cut(s)	468, 533, 692
Hpy8I	GTNNAC	2 cut(s)	109, 177
HpyAV	CCTTC	5 cut(s)	293, 617, 670, 773, 826
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	9 cut(s)	42, 91, 164, 185, 197, 319, 614, 663, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 206, 316
HpyF3I	CTNAG	2 cut(s)	11, 330
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	6 cut(s)	46, 175, 348, 405, 485, 866
HspAI	GCGC	1 cut(s)	609
Kpn2I	TCCGGA	1 cut(s)	532
KspAI	GTTAAC	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	118, 556, 638, 715, 794
LmnI	GCTCC	2 cut(s)	206, 307
LpnPI	CCDG	6 cut(s)	188, 236, 267, 305, 324, 546
Lsp1109I	GCAGC	3 cut(s)	209, 593, 598
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	69
MalI	GATC	5 cut(s)	120, 558, 640, 717, 796
MboI	GATC	5 cut(s)	118, 556, 638, 715, 794
MfeI	CAATTG	2 cut(s)	645, 801
MflI	RGATCY	2 cut(s)	638, 794
MhlI	GDGCHC	2 cut(s)	392, 769
MluCI	AATT	7 cut(s)	188, 527, 645, 686, 697, 729, 801
MroI	TCCGGA	1 cut(s)	532
MseI	TTAA	4 cut(s)	176, 474, 672, 728
MspI	CCGG	1 cut(s)	533
MunI	CAATTG	2 cut(s)	645, 801
MwoI	GCNNNNNNNGC	3 cut(s)	31, 206, 316
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	5 cut(s)	118, 556, 638, 715, 794
NlaIII	CATG	6 cut(s)	46, 175, 348, 405, 485, 866
NlaIV	GGNNCC	2 cut(s)	309, 766
NspI	RCATGY	1 cut(s)	405
PflMI	CCANNNNNTGG	2 cut(s)	73, 350
PkrI	GCNGC	3 cut(s)	199, 608, 613
Ppu21I	YACGTR	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	309, 766
PsuI	RGATCY	2 cut(s)	638, 794
SaqAI	TTAA	4 cut(s)	176, 474, 672, 728
SatI	GCNGC	3 cut(s)	198, 607, 612
Sau3AI	GATC	5 cut(s)	118, 556, 638, 715, 794
SduI	GDGCHC	2 cut(s)	392, 769
SfaNI	GCATC	1 cut(s)	173
SmiI	ATTTAAAT	1 cut(s)	475
SmlI	CTYRAG	2 cut(s)	293, 548
SmoI	CTYRAG	2 cut(s)	293, 548
Sse9I	AATT	7 cut(s)	188, 527, 645, 686, 697, 729, 801
SsiI	CCGC	5 cut(s)	49, 445, 762, 817, 874
SspMI	CTAG	1 cut(s)	468
SwaI	ATTTAAAT	1 cut(s)	475
TaiI	ACGT	1 cut(s)	72
TasI	AATT	7 cut(s)	188, 527, 645, 686, 697, 729, 801
Tru1I	TTAA	4 cut(s)	176, 474, 672, 728
Tru9I	TTAA	4 cut(s)	176, 474, 672, 728
TseI	GCWGC	3 cut(s)	197, 606, 611
TspDTI	ATGAA	2 cut(s)	59, 564
Van91I	CCANNNNNTGG	2 cut(s)	73, 350
XapI	RAATTY	3 cut(s)	527, 686, 697
XbaI	TCTAGA	1 cut(s)	467
XceI	RCATGY	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.