Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009270

Physical Location & Seq

Genomic Coordinates Forward (+)

8049761 .. 8053634

Gene Structure 3874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G111900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCCAAGAGATCTTCTTTGGGTAGCATGATGCGGAAGAAGCTAACCGACATCACTAATTTGCAGACTGCGAAAGCTATTAGCAAAGATGAAAAGCCCCCAGAAGATTGTCCTACTGATAAGGACTACATTGACCAGCTCATGAGGGAAAGAATGACTTTGATGAGACTTGTCTCGGAAAGGAATAAAATCGTTGAATTAAGTGGAGCTGAGTTGCAGAAACTGCGGATTAGTCTTCAGAAATTGCAGCAACAAAATTTGAATCTTGCTCAATCAAACAGCCGGATGTTAGCGGAGCTTAATTTAGGAAGAGAAAAGGTAAAAACACTACAGCATGAACTTCTTTGCAAGGATGCCTTACTTAAAGCAAAGAATCTAGAAATAGAGGTAAAAGCAGAGAAATGTCAAAATACTGAGTCTCAGGTATCAAAGCTCAAGGAAGTAGATGAGGCAGCTTTGCATAAAGCTGATAATGATGGTGAACCATGTAATGACAACAAAAGACGTGTCACAAGAAGTCGATCAATGGGGCCGTCTACTGCATGCCCAAAGGTTGAGAATAAAGAGAAGGTTGAAAATAAAAGGCGATGTTTGAGGAGGCAATCTGCTAGGTTTAGGTCCCAGACAGAGAACTTATTTGAGATAGAGGATGTCAAATTTCCAGTCAGTCGCACACCAGACAAAATGCATAATAGTGGTCCCACTCCATTGATTTCATGTGCCAGTAAAGAAGAGAAAGAAAACTGTGCCCCAAGGAGATCTTCAGTTGGAAGACGACCACGCAAAGCAGCTGAGAAGGTTCATTCCTACAAAGAAGTTCCTCTCAATGTAAAATTGCGTAGAGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051276 GO:0051321 GO:0061983 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

284

Amino Acids

32.41

Weight (kDa)

9.68

Isoelectric Point (pI)

69.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44960 AT3G44960 AT3G44960 AT3G44960 AT3G44960
fragaria_vesca	FvH4_3g30760 FvH4_3g30760
malus_domestica	MD03G1126800.v1.1 MD11G1147400.v1.1
prunus_persica	Prupe.6G111900_v2.0.a1 Prupe.6G111900_v2.0.a1
pyrus_communis	pycom11g12070
rosa_chinensis	RchiOBHm_Chr5g0056951
rosa_laevigata	RLG00000035142
rosa_multiflora	Rmu_sc0002035.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023220
rosa_rugosa	Rorug05G0304600
rosa_samantha	Rh5AG374000 Rh5BG385100 Rh5CG408300 Rh5DG398400
rosa_wichuraiana	Rw5G035210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	536
AciI	CCGC	3 cut(s)	34, 226, 293
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	256, 656
AcuI	CTGAAG	2 cut(s)	221, 747
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	3 cut(s)	197, 262, 575
AjiI	CACGTC	1 cut(s)	506
AjuI	GAANNNNNNNTTGG	2 cut(s)	745, 777
AluBI	AGCT	9 cut(s)	43, 77, 139, 209, 298, 433, 455, 467, 791
AluI	AGCT	9 cut(s)	43, 77, 139, 209, 298, 433, 455, 467, 791
Alw26I	GTCTC	3 cut(s)	160, 178, 423
AlwNI	CAGNNNCTG	1 cut(s)	223
AoxI	GGCC	2 cut(s)	3, 530
ApeKI	GCWGC	3 cut(s)	247, 452, 788
ApoI	RAATTY	2 cut(s)	256, 656
ArsI	GACNNNNNNTTYG	4 cut(s)	492, 524, 648, 680
AspS9I	GGNCC	3 cut(s)	530, 618, 698
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	2 cut(s)	618, 698
BaeGI	GKGCMC	1 cut(s)	751
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	227, 778
BbvI	GCAGC	3 cut(s)	259, 464, 800
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	1 cut(s)	517
BcoDI	GTCTC	3 cut(s)	160, 178, 423
BfaI	CTAG	2 cut(s)	377, 609
BfmI	CTRYAG	1 cut(s)	329
BglII	AGATCT	2 cut(s)	11, 758
BisI	GCNGC	3 cut(s)	248, 453, 789
BlsI	GCNGC	3 cut(s)	249, 454, 790
Bme18I	GGWCC	2 cut(s)	618, 698
BmgBI	CACGTC	1 cut(s)	506
BmgT120I	GGNCC	3 cut(s)	530, 618, 698
BmiI	GGNNCC	3 cut(s)	531, 620, 700
BmsI	GCATC	2 cut(s)	21, 343
BpiI	GAAGAC	2 cut(s)	227, 778
BpuEI	CTTGAG	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	752
Bse1I	ACTGG	2 cut(s)	662, 723
BseDI	CCNNGG	1 cut(s)	752
BseGI	GGATG	3 cut(s)	291, 358, 655
BseMII	CTCAG	4 cut(s)	201, 405, 434, 783
BseNI	ACTGG	2 cut(s)	662, 723
BseRI	GAGGAG	1 cut(s)	610
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	3 cut(s)	259, 464, 800
BshFI	GGCC	2 cut(s)	5, 532
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	2 cut(s)	604, 684
BsmAI	GTCTC	3 cut(s)	160, 178, 423
BsmFI	GGGAC	2 cut(s)	604, 684
BsnI	GGCC	2 cut(s)	5, 532
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	3 cut(s)	11, 521, 758
BspACI	CCGC	3 cut(s)	34, 226, 293
BspANI	GGCC	2 cut(s)	5, 532
BspCNI	CTCAG	4 cut(s)	202, 406, 433, 784
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	531, 620, 700
BsrI	ACTGG	2 cut(s)	662, 723
BssECI	CCNNGG	1 cut(s)	752
BssMI	GATC	3 cut(s)	11, 521, 758
BssT1I	CCWWGG	1 cut(s)	752
Bst4CI	ACNGT	1 cut(s)	746
Bst6I	CTCTTC	2 cut(s)	304, 726
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	544
BstDEI	CTNAG	4 cut(s)	210, 414, 420, 792
BstF5I	GGATG	3 cut(s)	291, 358, 655
BstKTI	GATC	3 cut(s)	14, 524, 761
BstMAI	GTCTC	3 cut(s)	160, 178, 423
BstMBI	GATC	3 cut(s)	11, 521, 758
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 223
BstNSI	RCATGY	1 cut(s)	546
BstSFI	CTRYAG	1 cut(s)	329
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	3 cut(s)	259, 464, 800
BstV2I	GAAGAC	2 cut(s)	227, 778
BstX2I	RGATCY	2 cut(s)	11, 758
BstYI	RGATCY	2 cut(s)	11, 758
BsuRI	GGCC	2 cut(s)	5, 532
BtgZI	GCGATG	1 cut(s)	601
BtrI	CACGTC	1 cut(s)	506
BtsCI	GGATG	3 cut(s)	291, 358, 655
Cac8I	GCNNGC	1 cut(s)	544
CaiI	CAGNNNCTG	1 cut(s)	223
CciI	TCATGA	1 cut(s)	141
Cfr13I	GGNCC	3 cut(s)	530, 618, 698
CviAII	CATG	6 cut(s)	28, 142, 335, 486, 543, 717
DdeI	CTNAG	4 cut(s)	210, 414, 420, 792
DpnI	GATC	3 cut(s)	13, 523, 760
DpnII	GATC	3 cut(s)	11, 521, 758
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	304, 726
EarI	CTCTTC	2 cut(s)	304, 726
Eco130I	CCWWGG	1 cut(s)	752
Eco47I	GGWCC	2 cut(s)	618, 698
Eco57I	CTGAAG	2 cut(s)	221, 747
EcoO109I	RGGNCCY	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	752
EcoT22I	ATGCAT	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	752
FaeI	CATG	6 cut(s)	31, 145, 338, 489, 546, 720
FaiI	YATR	8 cut(s)	29, 143, 336, 462, 487, 544, 690, 718
FalI	AAGNNNNNCTT	6 cut(s)	142, 174, 341, 373, 745, 777
FaqI	GGGAC	2 cut(s)	604, 684
FatI	CATG	6 cut(s)	27, 141, 334, 485, 542, 716
FblI	GTMKAC	1 cut(s)	536
Fnu4HI	GCNGC	3 cut(s)	248, 453, 789
FokI	GGATG	3 cut(s)	298, 365, 662
Fsp4HI	GCNGC	3 cut(s)	248, 453, 789
FspBI	CTAG	2 cut(s)	377, 609
GluI	GCNGC	3 cut(s)	248, 453, 789
HaeIII	GGCC	2 cut(s)	5, 532
HapII	CCGG	1 cut(s)	283
Hin1II	CATG	6 cut(s)	31, 145, 338, 489, 546, 720
HinfI	GANTC	3 cut(s)	262, 373, 416
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	482, 537
Hpy188I	TCNGA	2 cut(s)	178, 240
Hpy188III	TCNNGA	2 cut(s)	142, 377
Hpy8I	GTNNAC	2 cut(s)	482, 537
HpyAV	CCTTC	2 cut(s)	562, 790
HpyCH4III	ACNGT	1 cut(s)	746
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	7 cut(s)	64, 217, 247, 348, 460, 542, 688
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 223
HpyF3I	CTNAG	4 cut(s)	210, 414, 420, 792
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	6 cut(s)	31, 145, 338, 489, 546, 720
Kzo9I	GATC	3 cut(s)	11, 521, 758
LmnI	GCTCC	2 cut(s)	206, 295
LpnPI	CCDG	8 cut(s)	114, 149, 296, 407, 635, 675, 690, 736
Lsp1109I	GCAGC	3 cut(s)	259, 464, 800
LweI	GCATC	2 cut(s)	21, 343
MaeI	CTAG	2 cut(s)	377, 609
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	3 cut(s)	13, 523, 760
MboI	GATC	3 cut(s)	11, 521, 758
MboII	GAAGA	8 cut(s)	6, 49, 116, 227, 321, 743, 753, 783
MflI	RGATCY	2 cut(s)	11, 758
MhlI	GDGCHC	1 cut(s)	751
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	58, 197, 242, 256, 301, 656, 833
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	748
MnlI	CCTC	7 cut(s)	138, 379, 442, 588, 591, 640, 831
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	690
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	200, 300, 363
MslI	CAYNNNNRTG	1 cut(s)	693
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	2 cut(s)	40, 223
NdeII	GATC	3 cut(s)	11, 521, 758
NlaIII	CATG	6 cut(s)	31, 145, 338, 489, 546, 720
NlaIV	GGNNCC	3 cut(s)	531, 620, 700
NmuCI	GTSAC	1 cut(s)	508
NsiI	ATGCAT	1 cut(s)	690
NspI	RCATGY	1 cut(s)	546
PaeI	GCATGC	1 cut(s)	546
PagI	TCATGA	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	262, 373
PkrI	GCNGC	3 cut(s)	249, 454, 790
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PpuMI	RGGWCCY	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	618
PspN4I	GGNNCC	3 cut(s)	531, 620, 700
PspPI	GGNCC	3 cut(s)	530, 618, 698
PspPPI	RGGWCCY	1 cut(s)	618
PstNI	CAGNNNCTG	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	11, 758
PvuII	CAGCTG	1 cut(s)	791
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	3 cut(s)	200, 300, 363
SatI	GCNGC	3 cut(s)	248, 453, 789
Sau3AI	GATC	3 cut(s)	11, 521, 758
Sau96I	GGNCC	3 cut(s)	530, 618, 698
SchI	GAGTC	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	2 cut(s)	21, 343
SfcI	CTRYAG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	618, 698
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SphI	GCATGC	1 cut(s)	546
Sse9I	AATT	7 cut(s)	58, 197, 242, 256, 301, 656, 833
SsiI	CCGC	3 cut(s)	34, 226, 293
SspMI	CTAG	2 cut(s)	377, 609
StyI	CCWWGG	1 cut(s)	752
TaaI	ACNGT	1 cut(s)	746
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	1 cut(s)	520
TasI	AATT	7 cut(s)	58, 197, 242, 256, 301, 656, 833
TfiI	GAWTC	2 cut(s)	262, 373
Tru1I	TTAA	3 cut(s)	200, 300, 363
Tru9I	TTAA	3 cut(s)	200, 300, 363
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	3 cut(s)	247, 452, 788
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	4 cut(s)	105, 351, 705, 791
VpaK11BI	GGWCC	2 cut(s)	618, 698
XapI	RAATTY	2 cut(s)	256, 656
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	1 cut(s)	546
XmiI	GTMKAC	1 cut(s)	536
XspI	CTAG	2 cut(s)	377, 609
Zsp2I	ATGCAT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.