Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009270

Physical Location & Seq

Genomic Coordinates Reverse (-)

62811104 .. 62815390

Gene Structure 4287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG398400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAATTGGCAGAGTGATGGGTTGAGGTGTATAAGAACACCAATCAAATGGAGATACTGGGTTTTCCTTGATTCCTTGTTTTTTTTTTGGAGTAGTAAAATCATTGAATTGAGTGGAGCTGAGTTGCAGAAACTGCGAGTTAGTGTTCAGAAATTGCAGCTACAAAATTGGAATCTTGCTCGATCAAACAGCGTAATGTTAGCGGAGCTTAATTCAGGAAGAGACAAGGTAAAAACACTACAGCATGAACTTCTATGCAAGGAGGCTTTACTTAAGGCAAAGAATTTTGAAATGCAGGGAAAATCAGAGATGAAATGTCAAAATGCTGGCTCTAAGTTCAAGGAAGCAGAGGAGGCAACTTTGCATGAAGCGGATAATGATGACAAACCACGTATTGGCAACAAGAGGCGTGCAACAAGAAGTCAATCTCTGGGAGCTTCTACTAAATGCCAAAAGGTAGAACAATCCCTCACTTTACAGGGAAAAGAAGAGATGAAATGTCAAAATACTGGCCGTCAGCTCAAGGAAGGAGAGGAGCCAGCTTTGCAGGAAGCTACTAAGGATGACAAACCATGTGTTGGCAACAAAATGCGTGCTACAAGAAGTCAATCTTTGGGCACTTCTACTACATGCCAAAACATTGAACAGAAAGACAAGGTTGAGAATAGAAGGCGGAGTGTGAGGAGGCAGTCTTCTAGATTTAAATCCCATGAGGAAGAACAGACAGAAAACTTGTTTGAGATAGAAGAAGCTAAATTTCCGGAAAATCCAATGCTTGAGGATGATCCCATTCCCTCCATTTCATCTACCAAGCAAGAAGAGAAAGAAGATAGCTGCGCTGCAAAGAGTGAAGGAGTATCACAAAGATCTTCAATTGGAAGACCATTGTGCAAGGCAGTTAAGAAGGATACCGAATTTCCCGAAAATTCAATCCCTAATGGCGATCCCACTCCCTTAATTTTATCTACCAAGAAAGAGAGAGAAGAAAGCGGTGCCCCAAAGAGTGAAGGAGTATCACAGAGATCTTCAATTGCAAGACCATTGCGGAAAGCAGTTGAGAAGGTTCAGTCCTACAAAGAACCTCCACTCCATGTCAAAATGCGGAGAACAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051276 GO:0051321 GO:0061983 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

371

Amino Acids

42.26

Weight (kDa)

9.12

Isoelectric Point (pI)

65.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	345 - 369	5.4e-10	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44960 AT3G44960 AT3G44960 AT3G44960 AT3G44960
fragaria_vesca	FvH4_3g30760 FvH4_3g30760
malus_domestica	MD03G1126800.v1.1 MD11G1147400.v1.1
prunus_persica	Prupe.6G111900_v2.0.a1 Prupe.6G111900_v2.0.a1
pyrus_communis	pycom11g12070
rosa_chinensis	RchiOBHm_Chr5g0056951
rosa_laevigata	RLG00000035142
rosa_multiflora	Rmu_sc0002035.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023220
rosa_rugosa	Rorug05G0304600
rosa_samantha	Rh5AG374000 Rh5BG385100 Rh5CG408300 Rh5DG398400
rosa_wichuraiana	Rw5G035210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	992
AccB7I	CCANNNNNTGG	2 cut(s)	395, 578
AccIII	TCCGGA	1 cut(s)	760
AciI	CCGC	6 cut(s)	203, 371, 673, 990, 1045, 1102
AclWI	GGATC	2 cut(s)	779, 938
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	4 cut(s)	283, 755, 914, 925
AfiI	CCNNNNNNNGG	2 cut(s)	395, 578
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	7 cut(s)	107, 290, 340, 644, 873, 930, 1029
AloI	GAACNNNNNNTCC	2 cut(s)	1071, 1103
AluBI	AGCT	9 cut(s)	119, 160, 208, 437, 520, 542, 554, 752, 834
AluI	AGCT	9 cut(s)	119, 160, 208, 437, 520, 542, 554, 752, 834
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	779, 938
AlwNI	CAGNNNCTG	1 cut(s)	133
Aor13HI	TCCGGA	1 cut(s)	760
AoxI	GGCC	1 cut(s)	511
ApeKI	GCWGC	3 cut(s)	157, 834, 839
ApoI	RAATTY	4 cut(s)	283, 755, 914, 925
AspLEI	GCGC	1 cut(s)	839
BaeGI	GKGCMC	2 cut(s)	620, 997
BanI	GGYRCC	1 cut(s)	992
BbsI	GAAGAC	2 cut(s)	684, 886
BbvI	GCAGC	3 cut(s)	169, 821, 826
BccI	CCATC	1 cut(s)	11
BceAI	ACGGC	1 cut(s)	498
BciVI	GTATCC	1 cut(s)	901
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	239
BfrI	CTTAAG	1 cut(s)	272
BfuI	GTATCC	1 cut(s)	901
BglII	AGATCT	2 cut(s)	866, 1022
BisI	GCNGC	3 cut(s)	158, 835, 840
BlsI	GCNGC	3 cut(s)	159, 836, 841
BmiI	GGNNCC	2 cut(s)	537, 994
BmrI	ACTGGG	1 cut(s)	67
BmuI	ACTGGG	1 cut(s)	67
BpiI	GAAGAC	2 cut(s)	684, 886
BpuEI	CTTGAG	2 cut(s)	506, 797
BsaAI	YACGTR	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	703
BsaWI	WCCGGW	1 cut(s)	760
BsaXI	ACNNNNNCTCC	2 cut(s)	1071, 1101
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 578
Bse1I	ACTGG	2 cut(s)	62, 514
Bse3DI	GCAATG	1 cut(s)	1040
Bse8I	GATNNNNATC	1 cut(s)	703
BseAI	TCCGGA	1 cut(s)	760
BseGI	GGATG	2 cut(s)	568, 787
BseJI	GATNNNNATC	1 cut(s)	703
BseLI	CCNNNNNNNGG	2 cut(s)	395, 578
BseMI	GCAATG	1 cut(s)	1040
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	62, 514
BseRI	GAGGAG	3 cut(s)	365, 548, 697
BseSI	GKGCMC	2 cut(s)	620, 997
BseXI	GCAGC	3 cut(s)	169, 821, 826
BshFI	GGCC	1 cut(s)	513
BshNI	GGYRCC	1 cut(s)	992
BsiSI	CCGG	1 cut(s)	761
BslI	CCNNNNNNNGG	2 cut(s)	395, 578
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	513
Bsp1286I	GDGCHC	2 cut(s)	620, 997
Bsp13I	TCCGGA	1 cut(s)	760
Bsp143I	GATC	5 cut(s)	182, 784, 866, 943, 1022
BspACI	CCGC	6 cut(s)	203, 371, 673, 990, 1045, 1102
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	1 cut(s)	112
BspEI	TCCGGA	1 cut(s)	760
BspLI	GGNNCC	2 cut(s)	537, 994
BspPI	GGATC	2 cut(s)	779, 938
BspT107I	GGYRCC	1 cut(s)	992
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	1040
BsrI	ACTGG	2 cut(s)	62, 514
BssMI	GATC	5 cut(s)	182, 784, 866, 943, 1022
Bst6I	CTCTTC	3 cut(s)	214, 483, 813
BstAFI	CTTAAG	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	4 cut(s)	328, 411, 540, 594
BstDEI	CTNAG	3 cut(s)	120, 333, 558
BstF5I	GGATG	2 cut(s)	568, 787
BstHHI	GCGC	1 cut(s)	839
BstKTI	GATC	5 cut(s)	185, 787, 869, 946, 1025
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	5 cut(s)	182, 784, 866, 943, 1022
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 353, 544
BstNSI	RCATGY	1 cut(s)	633
BstSFI	CTRYAG	1 cut(s)	239
BstSLI	GKGCMC	2 cut(s)	620, 997
BstV1I	GCAGC	3 cut(s)	169, 821, 826
BstV2I	GAAGAC	2 cut(s)	684, 886
BstX2I	RGATCY	2 cut(s)	866, 1022
BstXI	CCANNNNNNTGG	1 cut(s)	48
BstYI	RGATCY	2 cut(s)	866, 1022
BsuI	GTATCC	1 cut(s)	901
BsuRI	GGCC	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	568, 787
Cac8I	GCNNGC	4 cut(s)	328, 411, 540, 594
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	1 cut(s)	839
CviAII	CATG	6 cut(s)	245, 365, 573, 630, 710, 1091
DdeI	CTNAG	3 cut(s)	120, 333, 558
DpnI	GATC	5 cut(s)	184, 786, 868, 945, 1024
DpnII	GATC	5 cut(s)	182, 784, 866, 943, 1022
DraI	TTTAAA	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	3 cut(s)	214, 483, 813
EarI	CTCTTC	3 cut(s)	214, 483, 813
EciI	GGCGGA	1 cut(s)	688
FaeI	CATG	6 cut(s)	248, 368, 576, 633, 713, 1094
FaiI	YATR	8 cut(s)	32, 246, 256, 366, 574, 631, 711, 1092
FalI	AAGNNNNNCTT	2 cut(s)	595, 627
FatI	CATG	6 cut(s)	244, 364, 572, 629, 709, 1090
Fnu4HI	GCNGC	3 cut(s)	158, 835, 840
FokI	GGATG	2 cut(s)	575, 794
Fsp4HI	GCNGC	3 cut(s)	158, 835, 840
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	1 cut(s)	838
GluI	GCNGC	3 cut(s)	158, 835, 840
HaeIII	GGCC	1 cut(s)	513
HapII	CCGG	1 cut(s)	761
HhaI	GCGC	1 cut(s)	839
Hin1II	CATG	6 cut(s)	248, 368, 576, 633, 713, 1094
Hin6I	GCGC	1 cut(s)	837
HinP1I	GCGC	1 cut(s)	837
HinfI	GANTC	2 cut(s)	71, 172
HpaII	CCGG	1 cut(s)	761
Hpy188I	TCNGA	2 cut(s)	150, 307
Hpy188III	TCNNGA	4 cut(s)	216, 696, 761, 920
HpyAV	CCTTC	6 cut(s)	521, 663, 845, 898, 1001, 1054
HpyCH4IV	ACGT	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 353, 544
HpyF3I	CTNAG	3 cut(s)	120, 333, 558
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	6 cut(s)	248, 368, 576, 633, 713, 1094
HspAI	GCGC	1 cut(s)	837
Kpn2I	TCCGGA	1 cut(s)	760
Kzo9I	GATC	5 cut(s)	182, 784, 866, 943, 1022
LmnI	GCTCC	4 cut(s)	116, 205, 434, 535
Lsp1109I	GCAGC	3 cut(s)	169, 821, 826
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	1 cut(s)	391
MalI	GATC	5 cut(s)	184, 786, 868, 945, 1024
MboI	GATC	5 cut(s)	182, 784, 866, 943, 1022
MfeI	CAATTG	2 cut(s)	873, 1029
MflI	RGATCY	2 cut(s)	866, 1022
MhlI	GDGCHC	2 cut(s)	620, 997
MroI	TCCGGA	1 cut(s)	760
MseI	TTAA	5 cut(s)	210, 273, 702, 900, 956
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	761
MunI	CAATTG	2 cut(s)	873, 1029
MwoI	GCNNNNNNNGC	3 cut(s)	133, 353, 544
NdeII	GATC	5 cut(s)	182, 784, 866, 943, 1022
NlaIII	CATG	6 cut(s)	248, 368, 576, 633, 713, 1094
NlaIV	GGNNCC	2 cut(s)	537, 994
NspI	RCATGY	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	71, 172
PflMI	CCANNNNNTGG	2 cut(s)	395, 578
PkrI	GCNGC	3 cut(s)	159, 836, 841
Ppu21I	YACGTR	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	537, 994
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	866, 1022
SaqAI	TTAA	5 cut(s)	210, 273, 702, 900, 956
SatI	GCNGC	3 cut(s)	158, 835, 840
Sau3AI	GATC	5 cut(s)	182, 784, 866, 943, 1022
SduI	GDGCHC	2 cut(s)	620, 997
SfcI	CTRYAG	1 cut(s)	239
SmiI	ATTTAAAT	1 cut(s)	703
SmlI	CTYRAG	3 cut(s)	272, 521, 776
SmoI	CTYRAG	3 cut(s)	272, 521, 776
SsiI	CCGC	6 cut(s)	203, 371, 673, 990, 1045, 1102
SspMI	CTAG	1 cut(s)	696
SwaI	ATTTAAAT	1 cut(s)	703
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	181
TfiI	GAWTC	2 cut(s)	71, 172
Tru1I	TTAA	5 cut(s)	210, 273, 702, 900, 956
Tru9I	TTAA	5 cut(s)	210, 273, 702, 900, 956
TseI	GCWGC	3 cut(s)	157, 834, 839
TspDTI	ATGAA	6 cut(s)	17, 261, 326, 381, 509, 792
Van91I	CCANNNNNTGG	2 cut(s)	395, 578
Vha464I	CTTAAG	1 cut(s)	272
XapI	RAATTY	4 cut(s)	283, 755, 914, 925
XbaI	TCTAGA	1 cut(s)	695
XceI	RCATGY	1 cut(s)	633
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.