Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009270

Physical Location & Seq

Genomic Coordinates Forward (+)

28692326 .. 28696296

Gene Structure 3971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGCACAAGATCGTCTTTCAGTACCGTAATGCGGCCGAAGCTCGCTGACGTCACCAACTTGGCGGCTCCTCCGAGAATTGAAAAGCCGCCCGAAATTTCCATGGGTGATAAGGACGGTGTTGAGCAGCTCATGAGGGAAAGAATGGCTTTGATCAAACTCGTCAGCGAAAGGAATAAAATCATTGAATTGAGTGGGGCTGAGTTGCAGAAACTGCGAGTTAGTGTTCAGAAATTGCAGCTACAAAATTGGAATCTTGCTCGATCAAACAGCGTAATGTTAGCGGAGCTTAATTCAGGAAGAGACAAGGTAAAAACACTACAGCATGAACTTCTATGCAAGGAGGCTTTACTTAAGGCAAAGAATTTTGAAATGCAGGGAAAATCAGAGATGAAATGTCAAAATGCTGGCTCTAAGTTCAAGGAAGCAGAGGAGGCAACTTTGCATGAAGCGGATAATGATGACAAACCACGTATTGGCAACAAGAGGCGTGCAACAAGAAGTCAATCTCTGGGTGCTTCTACTAAATGCCAAAAGGTAGAGCAATCCCTCACTTTACAGGGAAAGGAAGAGATGAAATGTCAAAATACTGGCCGTCAGCTCAAGGAAGGAGAGGAGCCAGCTTTGCAGGAAGCTACTAAGGATGACAAACCATGTGTTGGCAACAAAATGCGTGCTACAAGAAGTCAATCTTTGGGCACTTCTACTACATGCCAAAACATTGAACAGAAAAACAAGGTTGAGAATAGAAGGCGGAGTTTGAGGAGGCAGTCTTCTAGATTTAAATGCCATGAGGAAGAACAGACAGAAAACTTGTTTGAGATAGAAGAAGCCAAATTTCCGGAAAATCCAATGCTTGAGGATGATCCCATCCCCTCCATTTCTTCTACCAAGCAAGAAGAGAAAGAAGATAGCTGCGCTGCAAAGAGTGAAGGAGTATCACAAAGATCTTCAATTGGAAGACCATTGTGCAAGGCAGTTAAGAAGGATACCGAATTTCCCGAAAATTCAATCCCTAATGGTGATCCCACTCCCTTAATTTTATCTACCAAGAAAGAGAGAGAAGAAAGCGGTGCCCTAAAGAGTGAAGGAGTATCACAGAGATCTTCAATTGCAAGACCATTGCGGAAAGCAGTTGAGAAGGTTCAGTCCTACAAAGAACCTCCACTCCATGTCAAAATGCGGAGAACAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051276 GO:0051321 GO:0061983 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

398

Amino Acids

44.82

Weight (kDa)

9.17

Isoelectric Point (pI)

66.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	372 - 396	5.9e-10	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44960 AT3G44960 AT3G44960 AT3G44960 AT3G44960
fragaria_vesca	FvH4_3g30760 FvH4_3g30760
malus_domestica	MD03G1126800.v1.1 MD11G1147400.v1.1
prunus_persica	Prupe.6G111900_v2.0.a1 Prupe.6G111900_v2.0.a1
pyrus_communis	pycom11g12070
rosa_chinensis	RchiOBHm_Chr5g0056951
rosa_laevigata	RLG00000035142
rosa_multiflora	Rmu_sc0002035.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023220
rosa_rugosa	Rorug05G0304600
rosa_samantha	Rh5AG374000 Rh5BG385100 Rh5CG408300 Rh5DG398400
rosa_wichuraiana	Rw5G035210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	1073
AccB7I	CCANNNNNTGG	2 cut(s)	476, 659
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	9 cut(s)	34, 65, 89, 284, 452, 754, 1071, 1126, 1183
AclWI	GGATC	2 cut(s)	860, 1019
AcoI	YGGCCR	2 cut(s)	35, 592
AcsI	RAATTY	5 cut(s)	96, 364, 836, 995, 1006
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	3 cut(s)	33, 476, 659
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	8 cut(s)	83, 188, 371, 421, 725, 954, 1011, 1110
AloI	GAACNNNNNNTCC	2 cut(s)	1152, 1184
AluBI	AGCT	8 cut(s)	43, 130, 241, 289, 601, 623, 635, 915
AluI	AGCT	8 cut(s)	43, 130, 241, 289, 601, 623, 635, 915
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	860, 1019
AlwNI	CAGNNNCTG	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	2 cut(s)	35, 592
ApeKI	GCWGC	4 cut(s)	127, 238, 915, 920
ApoI	RAATTY	5 cut(s)	96, 364, 836, 995, 1006
AspLEI	GCGC	1 cut(s)	920
AsuHPI	GGTGA	3 cut(s)	46, 119, 1034
BaeGI	GKGCMC	3 cut(s)	8, 701, 1078
BanI	GGYRCC	1 cut(s)	1073
BbsI	GAAGAC	2 cut(s)	765, 967
BbvI	GCAGC	4 cut(s)	139, 250, 902, 907
BccI	CCATC	1 cut(s)	878
BceAI	ACGGC	1 cut(s)	579
BciVI	GTATCC	1 cut(s)	982
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	777
BfmI	CTRYAG	1 cut(s)	320
BfrI	CTTAAG	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	982
BglII	AGATCT	2 cut(s)	947, 1103
BisI	GCNGC	7 cut(s)	35, 66, 89, 128, 239, 916, 921
BlsI	GCNGC	7 cut(s)	36, 67, 90, 129, 240, 917, 922
BmiI	GGNNCC	3 cut(s)	69, 618, 1075
BpiI	GAAGAC	2 cut(s)	765, 967
BpuEI	CTTGAG	2 cut(s)	587, 878
BsaAI	YACGTR	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	841
BsaXI	ACNNNNNCTCC	2 cut(s)	1152, 1182
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 476, 659
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	1121
BseAI	TCCGGA	1 cut(s)	841
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	3 cut(s)	649, 868, 870
BseLI	CCNNNNNNNGG	3 cut(s)	33, 476, 659
BseMI	GCAATG	1 cut(s)	1121
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	4 cut(s)	60, 446, 629, 778
BseSI	GKGCMC	3 cut(s)	8, 701, 1078
BseX3I	CGGCCG	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	139, 250, 902, 907
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	37, 594
BshNI	GGYRCC	1 cut(s)	1073
BsiEI	CGRYCG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	842
BslI	CCNNNNNNNGG	3 cut(s)	33, 476, 659
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	37, 594
Bsp1286I	GDGCHC	3 cut(s)	8, 701, 1078
Bsp13I	TCCGGA	1 cut(s)	841
Bsp143I	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	9 cut(s)	34, 65, 89, 284, 452, 754, 1071, 1126, 1183
BspANI	GGCC	2 cut(s)	37, 594
BspCNI	CTCAG	1 cut(s)	193
BspEI	TCCGGA	1 cut(s)	841
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	69, 618, 1075
BspPI	GGATC	2 cut(s)	860, 1019
BspT107I	GGYRCC	1 cut(s)	1073
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	1121
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	28, 119
Bst6I	CTCTTC	3 cut(s)	295, 564, 894
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	5 cut(s)	45, 409, 492, 621, 675
BstDEI	CTNAG	3 cut(s)	201, 414, 639
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	3 cut(s)	649, 868, 870
BstHHI	GCGC	1 cut(s)	920
BstKTI	GATC	7 cut(s)	14, 156, 266, 868, 950, 1027, 1106
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 214, 434, 625
BstNSI	RCATGY	1 cut(s)	714
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	3 cut(s)	8, 701, 1078
BstV1I	GCAGC	4 cut(s)	139, 250, 902, 907
BstV2I	GAAGAC	2 cut(s)	765, 967
BstX2I	RGATCY	2 cut(s)	947, 1103
BstYI	RGATCY	2 cut(s)	947, 1103
BstZI	CGGCCG	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	982
BsuRI	GGCC	2 cut(s)	37, 594
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	649, 868, 870
Cac8I	GCNNGC	5 cut(s)	45, 409, 492, 621, 675
CaiI	CAGNNNCTG	1 cut(s)	214
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	1 cut(s)	920
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	8 cut(s)	103, 133, 326, 446, 654, 711, 791, 1172
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	3 cut(s)	201, 414, 639
DpnI	GATC	7 cut(s)	13, 155, 265, 867, 949, 1026, 1105
DpnII	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
DraI	TTTAAA	1 cut(s)	784
EaeI	YGGCCR	2 cut(s)	35, 592
EagI	CGGCCG	1 cut(s)	35
Eam1104I	CTCTTC	3 cut(s)	295, 564, 894
EarI	CTCTTC	3 cut(s)	295, 564, 894
EciI	GGCGGA	1 cut(s)	769
EclXI	CGGCCG	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	102
Eco52I	CGGCCG	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1175
FaiI	YATR	9 cut(s)	104, 134, 327, 337, 447, 655, 712, 792, 1173
FalI	AAGNNNNNCTT	5 cut(s)	33, 133, 165, 676, 708
FatI	CATG	8 cut(s)	102, 132, 325, 445, 653, 710, 790, 1171
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	7 cut(s)	35, 66, 89, 128, 239, 916, 921
FokI	GGATG	3 cut(s)	656, 857, 875
Fsp4HI	GCNGC	7 cut(s)	35, 66, 89, 128, 239, 916, 921
FspBI	CTAG	1 cut(s)	777
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	7 cut(s)	35, 66, 89, 128, 239, 916, 921
HaeIII	GGCC	2 cut(s)	37, 594
HapII	CCGG	1 cut(s)	842
HhaI	GCGC	1 cut(s)	920
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1175
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	842
HphI	GGTGA	3 cut(s)	46, 119, 1034
Hpy188I	TCNGA	3 cut(s)	75, 231, 388
Hpy188III	TCNNGA	5 cut(s)	133, 297, 777, 842, 1001
HpyAV	CCTTC	6 cut(s)	602, 744, 926, 979, 1082, 1135
HpyCH4III	ACNGT	2 cut(s)	28, 119
HpyCH4IV	ACGT	2 cut(s)	51, 472
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 214, 434, 625
HpyF3I	CTNAG	3 cut(s)	201, 414, 639
HpySE526I	ACGT	2 cut(s)	51, 472
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1175
HspAI	GCGC	1 cut(s)	918
Kpn2I	TCCGGA	1 cut(s)	841
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
LmnI	GCTCC	3 cut(s)	73, 286, 616
LpnPI	CCDG	9 cut(s)	282, 362, 393, 497, 545, 576, 614, 633, 855
Lsp1109I	GCAGC	4 cut(s)	139, 250, 902, 907
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	2 cut(s)	51, 472
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	7 cut(s)	13, 155, 265, 867, 949, 1026, 1105
MboI	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
MfeI	CAATTG	2 cut(s)	954, 1110
MflI	RGATCY	2 cut(s)	947, 1103
MhlI	GDGCHC	3 cut(s)	8, 701, 1078
MroI	TCCGGA	1 cut(s)	841
MseI	TTAA	5 cut(s)	291, 354, 783, 981, 1037
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	1 cut(s)	842
MunI	CAATTG	2 cut(s)	954, 1110
MwoI	GCNNNNNNNGC	4 cut(s)	40, 214, 434, 625
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
NlaIII	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1175
NlaIV	GGNNCC	3 cut(s)	69, 618, 1075
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	714
PagI	TCATGA	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	253
PflMI	CCANNNNNTGG	2 cut(s)	476, 659
PkrI	GCNGC	7 cut(s)	36, 67, 90, 129, 240, 917, 922
Ppu21I	YACGTR	1 cut(s)	473
PspN4I	GGNNCC	3 cut(s)	69, 618, 1075
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	947, 1103
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
SaqAI	TTAA	5 cut(s)	291, 354, 783, 981, 1037
SatI	GCNGC	7 cut(s)	35, 66, 89, 128, 239, 916, 921
Sau3AI	GATC	7 cut(s)	11, 153, 263, 865, 947, 1024, 1103
SduI	GDGCHC	3 cut(s)	8, 701, 1078
SfcI	CTRYAG	1 cut(s)	320
SmiI	ATTTAAAT	1 cut(s)	784
SmlI	CTYRAG	3 cut(s)	353, 602, 857
SmoI	CTYRAG	3 cut(s)	353, 602, 857
SsiI	CCGC	9 cut(s)	34, 65, 89, 284, 452, 754, 1071, 1126, 1183
SspMI	CTAG	1 cut(s)	777
StyI	CCWWGG	1 cut(s)	102
SwaI	ATTTAAAT	1 cut(s)	784
TaaI	ACNGT	2 cut(s)	28, 119
TaiI	ACGT	2 cut(s)	54, 475
TaqI	TCGA	1 cut(s)	262
TauI	GCSGC	3 cut(s)	37, 68, 91
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	5 cut(s)	291, 354, 783, 981, 1037
Tru9I	TTAA	5 cut(s)	291, 354, 783, 981, 1037
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	4 cut(s)	127, 238, 915, 920
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	4 cut(s)	342, 407, 462, 590
Van91I	CCANNNNNTGG	2 cut(s)	476, 659
Vha464I	CTTAAG	1 cut(s)	353
XapI	RAATTY	5 cut(s)	96, 364, 836, 995, 1006
XbaI	TCTAGA	1 cut(s)	776
XceI	RCATGY	1 cut(s)	714
XspI	CTAG	1 cut(s)	777
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.