Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009270

Physical Location & Seq

Genomic Coordinates Forward (+)

13878610 .. 13882460

Gene Structure 3851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1147400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAGAAGTGAGAGTATGCCCAAGAGATTGTCTTTGGGTGGCATAATGAGGAAGAAGCTATCCGACATCACCAATTTGCAGGCTGCGAAACCAATGATCCAGGATGAAAAGCCGCCGGAAGATTGTTTGACTGATAAGGACTGCATTGAGCAGCTCAGGAGGGAAAGAATGACTTTGATCAGACTTGTTGCCGAAAGGACTAAAATGGTTGAATTAGGTGGAGCTGAGTTGCAGAAACTGCGAATTAGTCTCCAGAAATTGCAGCTACAAAATTTGAGTCTTGCCCAATCGAACAGCAGGATGTTGGCAGAGCTTAATTTAGGAAGAGAGAAGGTAAAAACACTACAGCATGAACTTCTATGCAAGAATGCTTTATTTAAAGCAAAGAATCTAGTAATAGAGGGAAAAACAGAGTTTAAACGTCAAAATACTGCCTCTCAGATATCTAAGATCAAGGAAGGAGAGGACTCAAAGGAGATATCTTTGCATAAAGCTGAAAATGATGGCGAAGCATGTAATCTCAACAAAAGACGTGCAACAAGAAGTCGATCGGTAGACGCTTCTACCACATGCCAAAAGGTTGAAGACATAGAGAAGGTTGAAAATAAAAGACGGTGTTTGAGGAGGCAATCTGCCAGATTTATTTCCCAGACAGAGAACCTGTTTGAAATAGAGGATGTCAAATTACCAGTCAGTTGCACACCAGACAGTCCGATGCGCAGTAGTGGTCCCACTCCATTGATTTCATCTACAAGAAAAGAAGAGGGAGAAGATAATTGTGCCCCAAGGCGGTCTTCAGTTGGAAGACCATTGCGCAAAGCAGCTGAGAAGGTTAAGTCCTACAAAGAAGTTTCGTTAGTAGTCAAAATGCGGAGATCGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051276 GO:0051321 GO:0061983 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

295

Amino Acids

33.44

Weight (kDa)

9.67

Isoelectric Point (pI)

77.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	268 - 292	8.8e-09	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44960 AT3G44960 AT3G44960 AT3G44960 AT3G44960
fragaria_vesca	FvH4_3g30760 FvH4_3g30760
malus_domestica	MD03G1126800.v1.1 MD11G1147400.v1.1
prunus_persica	Prupe.6G111900_v2.0.a1 Prupe.6G111900_v2.0.a1
pyrus_communis	pycom11g12070
rosa_chinensis	RchiOBHm_Chr5g0056951
rosa_laevigata	RLG00000035142
rosa_multiflora	Rmu_sc0002035.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023220
rosa_rugosa	Rorug05G0304600
rosa_samantha	Rh5AG374000 Rh5BG385100 Rh5CG408300 Rh5DG398400
rosa_wichuraiana	Rw5G035210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	719, 815
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	3 cut(s)	113, 790, 871
AclWI	GGATC	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	780
AfiI	CCNNNNNNNGG	1 cut(s)	789
AgsI	TTSAA	4 cut(s)	212, 584, 602, 668
AjiI	CACGTC	1 cut(s)	533
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	778, 810
AluBI	AGCT	7 cut(s)	58, 154, 224, 265, 313, 494, 824
AluI	AGCT	7 cut(s)	58, 154, 224, 265, 313, 494, 824
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	91
AlwNI	CAGNNNCTG	1 cut(s)	238
ApeKI	GCWGC	4 cut(s)	83, 151, 262, 821
ApoI	RAATTY	1 cut(s)	271
ArsI	GACNNNNNNTTYG	4 cut(s)	262, 294, 675, 707
AspLEI	GCGC	2 cut(s)	720, 816
AspS9I	GGNCC	1 cut(s)	728
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	728
BaeGI	GKGCMC	1 cut(s)	784
BbsI	GAAGAC	3 cut(s)	591, 786, 811
BbvI	GCAGC	4 cut(s)	70, 163, 274, 833
BccI	CCATC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	101
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	344
BisI	GCNGC	5 cut(s)	84, 113, 152, 263, 822
BlsI	GCNGC	5 cut(s)	85, 114, 153, 264, 823
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	728
BmgBI	CACGTC	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	1 cut(s)	730
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	705
BpiI	GAAGAC	3 cut(s)	591, 786, 811
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	785
Bsc4I	CCNNNNNNNGG	1 cut(s)	789
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	785
BseGI	GGATG	3 cut(s)	109, 306, 682
BseLI	CCNNNNNNNGG	1 cut(s)	789
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	4 cut(s)	169, 216, 452, 816
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	1 cut(s)	637
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	4 cut(s)	70, 163, 274, 833
Bsh1285I	CGRYCG	1 cut(s)	551
BsiEI	CGRYCG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	714
BslI	CCNNNNNNNGG	1 cut(s)	789
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	714
BsmI	GAATGC	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	784
Bsp143I	GATC	5 cut(s)	96, 177, 450, 548, 875
BspACI	CCGC	3 cut(s)	113, 790, 871
BspCNI	CTCAG	4 cut(s)	168, 217, 451, 817
BspLI	GGNNCC	1 cut(s)	730
BspPI	GGATC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	809
BsrI	ACTGG	1 cut(s)	689
BssECI	CCNNGG	1 cut(s)	785
BssMI	GATC	5 cut(s)	96, 177, 450, 548, 875
BssT1I	CCWWGG	1 cut(s)	785
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	615, 710
Bst6I	CTCTTC	2 cut(s)	319, 756
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	5 cut(s)	155, 225, 438, 447, 825
BstF5I	GGATG	3 cut(s)	109, 306, 682
BstHHI	GCGC	2 cut(s)	720, 816
BstKTI	GATC	5 cut(s)	99, 180, 453, 551, 878
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	5 cut(s)	96, 177, 450, 548, 875
BstMCI	CGRYCG	1 cut(s)	551
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	2 cut(s)	516, 573
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	784
BstV1I	GCAGC	4 cut(s)	70, 163, 274, 833
BstV2I	GAAGAC	3 cut(s)	591, 786, 811
BtrI	CACGTC	1 cut(s)	533
BtsCI	GGATG	3 cut(s)	109, 306, 682
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	2 cut(s)	720, 816
Cfr13I	GGNCC	1 cut(s)	728
CseI	GACGC	1 cut(s)	566
CviAII	CATG	3 cut(s)	350, 513, 570
CviJI	RGCY	9 cut(s)	58, 83, 112, 154, 224, 265, 313, 494, 824
CviKI_1	RGCY	9 cut(s)	58, 83, 112, 154, 224, 265, 313, 494, 824
DdeI	CTNAG	5 cut(s)	155, 225, 438, 447, 825
DpnI	GATC	5 cut(s)	98, 179, 452, 550, 877
DpnII	GATC	5 cut(s)	96, 177, 450, 548, 875
DraI	TTTAAA	2 cut(s)	379, 418
Eam1104I	CTCTTC	2 cut(s)	319, 756
EarI	CTCTTC	2 cut(s)	319, 756
Eco130I	CCWWGG	1 cut(s)	785
Eco32I	GATATC	2 cut(s)	444, 480
Eco47I	GGWCC	1 cut(s)	728
Eco57I	CTGAAG	1 cut(s)	780
EcoRII	CCWGG	1 cut(s)	99
EcoRV	GATATC	2 cut(s)	444, 480
EcoT14I	CCWWGG	1 cut(s)	785
ErhI	CCWWGG	1 cut(s)	785
FaeI	CATG	3 cut(s)	353, 516, 573
FaiI	YATR	8 cut(s)	17, 44, 351, 361, 489, 514, 571, 590
FalI	AAGNNNNNCTT	4 cut(s)	157, 189, 778, 810
FaqI	GGGAC	1 cut(s)	714
FatI	CATG	3 cut(s)	349, 512, 569
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	5 cut(s)	84, 113, 152, 263, 822
FokI	GGATG	3 cut(s)	116, 313, 689
Fsp4HI	GCNGC	5 cut(s)	84, 113, 152, 263, 822
FspBI	CTAG	1 cut(s)	392
FspI	TGCGCA	2 cut(s)	719, 815
GlaI	GCGC	2 cut(s)	719, 815
GluI	GCNGC	5 cut(s)	84, 113, 152, 263, 822
GsuI	CTGGAG	1 cut(s)	236
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	566
HhaI	GCGC	2 cut(s)	720, 816
Hin1II	CATG	3 cut(s)	353, 516, 573
Hin6I	GCGC	2 cut(s)	718, 814
HinP1I	GCGC	2 cut(s)	718, 814
HinfI	GANTC	3 cut(s)	277, 388, 467
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	5 cut(s)	64, 182, 441, 714, 880
Hpy188III	TCNNGA	2 cut(s)	157, 253
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	4 cut(s)	325, 452, 589, 823
HpyCH4III	ACNGT	2 cut(s)	615, 710
HpyCH4IV	ACGT	2 cut(s)	421, 532
HpyCH4V	TGCA	8 cut(s)	79, 144, 232, 262, 363, 487, 536, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	5 cut(s)	155, 225, 438, 447, 825
HpySE526I	ACGT	2 cut(s)	421, 532
Hsp92II	CATG	3 cut(s)	353, 516, 573
HspAI	GCGC	2 cut(s)	718, 814
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	96, 177, 450, 548, 875
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	4 cut(s)	70, 163, 274, 833
LweI	GCATC	1 cut(s)	705
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	2 cut(s)	421, 532
MalI	GATC	5 cut(s)	98, 179, 452, 550, 877
MboI	GATC	5 cut(s)	96, 177, 450, 548, 875
MboII	GAAGA	8 cut(s)	64, 131, 336, 596, 773, 782, 786, 816
MhlI	GDGCHC	1 cut(s)	784
MluCI	AATT	8 cut(s)	73, 212, 243, 257, 271, 316, 683, 775
MlyI	GAGTC	2 cut(s)	286, 461
MmeI	TCCRAC	2 cut(s)	87, 781
MnlI	CCTC	9 cut(s)	42, 153, 394, 445, 457, 615, 618, 667, 757
MseI	TTAA	4 cut(s)	315, 378, 417, 834
MspA1I	CMGCKG	1 cut(s)	824
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	101
MssI	GTTTAAAC	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeII	GATC	5 cut(s)	96, 177, 450, 548, 875
NlaIII	CATG	3 cut(s)	353, 516, 573
NlaIV	GGNNCC	1 cut(s)	730
NsbI	TGCGCA	2 cut(s)	719, 815
NspI	RCATGY	2 cut(s)	516, 573
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	5 cut(s)	85, 114, 153, 264, 823
Ple19I	CGATCG	1 cut(s)	551
PleI	GAGTC	2 cut(s)	285, 461
PmeI	GTTTAAAC	1 cut(s)	418
PpsI	GAGTC	2 cut(s)	285, 461
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	730
PspPI	GGNCC	1 cut(s)	728
PstNI	CAGNNNCTG	1 cut(s)	238
PvuI	CGATCG	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	824
SaqAI	TTAA	4 cut(s)	315, 378, 417, 834
SatI	GCNGC	5 cut(s)	84, 113, 152, 263, 822
Sau3AI	GATC	5 cut(s)	96, 177, 450, 548, 875
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	2 cut(s)	286, 461
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	784
SfaNI	GCATC	1 cut(s)	705
SfcI	CTRYAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	728
Sse9I	AATT	8 cut(s)	73, 212, 243, 257, 271, 316, 683, 775
SsiI	CCGC	3 cut(s)	113, 790, 871
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	785
TaaI	ACNGT	2 cut(s)	615, 710
TaiI	ACGT	2 cut(s)	424, 535
TaqI	TCGA	2 cut(s)	290, 547
TasI	AATT	8 cut(s)	73, 212, 243, 257, 271, 316, 683, 775
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	4 cut(s)	315, 378, 417, 834
Tru9I	TTAA	4 cut(s)	315, 378, 417, 834
TseI	GCWGC	4 cut(s)	83, 151, 262, 821
TspDTI	ATGAA	3 cut(s)	120, 366, 735
VpaK11BI	GGWCC	1 cut(s)	728
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	2 cut(s)	516, 573
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.