MD03G1152900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015331
Physical Location & Seq
Reverse (-)
17359409 .. 17362327
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1152900.v1.1.491

Sequence Viewer

Length: 249 bp
ATGTTGTTCTCCAGCATGGGAAACAAGCCTGCGAAGCAAGAAAGGGAAGAGGTCTTGTTGAAAGTTGTTCCTCCGTTGGACCGTGCGTATGTTAGGTGGCTTGCTCGCGATCTTGAGAGGACTCATGGCTTTACACCAGTGAACCCTCGTGCGGTGAAGCCACCAGAACATTATATTGAGTACATGCATTTGAATGGCTGGTTGGATGTAGACTTGGGTGATCCTGATCTAGCCCATTTATTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.57

Weight (kDa)

6.4

Isoelectric Point (pI)

55.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtTam9 PF25111 6 - 82 7.4e-45 AtTam9 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22210 AT5G22210
malus_domestica MD03G1152900.v1.1
prunus_persica Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0047291
rosa_laevigata RLG00000034487
rosa_multiflora Rmu_sc0003441.1_g000095
rosa_roxburghii Rroxscaffold_1G00034070
rosa_rugosa Rorug05G0235500
rosa_samantha Rh5AG314500 Rh5BG323200 Rh5CG350400 Rh5DG334100
rosa_wichuraiana Rw5G029400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 210
AccII CGCG 1 cut(s) 108
AciI CCGC 1 cut(s) 152
AclWI GGATC 1 cut(s) 215
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 3 cut(s) 61, 193, 244
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AlwI GGATC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 166, 230
AvaII GGWCC 1 cut(s) 79
BauI CACGAG 1 cut(s) 147
BfaI CTAG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 225
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 151
Bsp143I GATC 3 cut(s) 109, 220, 226
Bsp68I TCGCGA 1 cut(s) 108
BspACI CCGC 1 cut(s) 152
BspFNI CGCG 1 cut(s) 108
BspPI GGATC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 137
BssMI GATC 3 cut(s) 109, 220, 226
BssSI CACGAG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 3 cut(s) 30, 102, 106
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 3 cut(s) 112, 223, 229
BstMBI GATC 3 cut(s) 109, 220, 226
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 187
BstUI CGCG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 144
BtuMI TCGCGA 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 30, 102, 106
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 181
CviAII CATG 3 cut(s) 16, 125, 184
CviJI RGCY 6 cut(s) 28, 100, 129, 160, 198, 233
CviKI_1 RGCY 6 cut(s) 28, 100, 129, 160, 198, 233
CviQI GTAC 1 cut(s) 181
DpnI GATC 3 cut(s) 111, 222, 228
DpnII GATC 3 cut(s) 109, 220, 226
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 189
FaeI CATG 3 cut(s) 19, 128, 187
FaiI YATR 5 cut(s) 17, 90, 126, 174, 185
FatI CATG 3 cut(s) 15, 124, 183
FblI GTMKAC 1 cut(s) 210
FokI GGATG 1 cut(s) 218
FspBI CTAG 1 cut(s) 230
Hin1II CATG 3 cut(s) 19, 128, 187
HinfI GANTC 1 cut(s) 121
HphI GGTGA 2 cut(s) 166, 230
Hpy166II GTNNAC 2 cut(s) 142, 211
Hpy188III TCNNGA 3 cut(s) 107, 113, 224
Hpy8I GTNNAC 2 cut(s) 142, 211
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
Hsp92II CATG 3 cut(s) 19, 128, 187
Kzo9I GATC 3 cut(s) 109, 220, 226
LpnPI CCDG 6 cut(s) 25, 42, 150, 177, 184, 237
MaeI CTAG 1 cut(s) 230
MalI GATC 3 cut(s) 111, 222, 228
MboI GATC 3 cut(s) 109, 220, 226
MboII GAAGA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 2 cut(s) 57, 183
MnlI CCTC 4 cut(s) 43, 81, 111, 156
Mph1103I ATGCAT 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 192
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 3 cut(s) 109, 220, 226
NlaIII CATG 3 cut(s) 19, 128, 187
NruI TCGCGA 1 cut(s) 108
NsiI ATGCAT 1 cut(s) 189
NspI RCATGY 1 cut(s) 187
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 79
RruI TCGCGA 1 cut(s) 108
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 192
Sau3AI GATC 3 cut(s) 109, 220, 226
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 115
SetI ASST 2 cut(s) 54, 98
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 83
TatI WGTACW 1 cut(s) 180
TscAI CASTG 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 79
XceI RCATGY 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.