Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015331

Physical Location & Seq

Genomic Coordinates Reverse (-)

43586507 .. 43588179

Gene Structure 1673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034487

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCAACTTTAGAGGATTCAGTGGTTAGTTCCAAGCTCTCTCCGGCAGACACATATGGAGCCGTGGTTCTGGGTGGTACCTTTGACCGACTACACGAAGGCCATCATCTCTTTCTCAAGGCTGCAGTGGATCTCACTAGACATAGAATTGTCTATCAAGCAGGGGCTGCTAGTGCAAGTGAACCTATTATTGACCCATATGGCCCCTCAACAATAGATGAAAATTTGGAGGCAATCGTTGTCGGCAAAGAGACTTTACCTGGTGGACTGGCTGTTAATAAGAAGAGAGGTGATAGAGGCCTCTCAAAACTTAAGATTGAAGTAGTAGATTTAGTGCCTGAAGCATCTGGTGGAGATAAGATTAGTTCATCAAGATTAAGGAAGCTCGAGGCAGAGAAGGTTAAAAATCAAACACAGTTCCGAGAGAATAAACTGGTAACAAGTTCTAATGTGGCAGTTTGCTTGAGTGTGAAATGGTCTGGAAGTTCTCCAAACATGGGAAACAAGCCTGCAAAACAAGAAAGGGAAGAAATCTTCTTGAAAGTTGTTCCTCCACTGGATCATGCATATGTTAGGTGGCTTGCTCGAGATCTTGAGAGGATTCACGGCTTCACACCAGCAAACCCTCGTGCAGTGAAGCCCCCAGATCATTATATCGAGTACATGCGCTTGAATGGGTGGTTAGATGTGGACTTGAGTGATCCTGATCTAGCCCATTTATTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

243

Amino Acids

26.64

Weight (kDa)

7.11

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AtTam9	PF25111	166 - 242	5.7e-45	AtTam9 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22210 AT5G22210
malus_domestica	MD03G1152900.v1.1
prunus_persica	Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0047291
rosa_laevigata	RLG00000034487
rosa_multiflora	Rmu_sc0003441.1_g000095
rosa_roxburghii	Rroxscaffold_1G00034070
rosa_rugosa	Rorug05G0235500
rosa_samantha	Rh5AG314500 Rh5BG323200 Rh5CG350400 Rh5DG334100
rosa_wichuraiana	Rw5G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	77
AclWI	GGATC	3 cut(s)	138, 567, 695
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	2 cut(s)	79, 662
AfiI	CCNNNNNNNGG	1 cut(s)	497
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	4 cut(s)	320, 541, 673, 724
AjnI	CCWGG	1 cut(s)	259
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	2 cut(s)	37, 385
AluI	AGCT	2 cut(s)	37, 385
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	3 cut(s)	138, 567, 695
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	2 cut(s)	386, 585
AoxI	GGCC	3 cut(s)	100, 202, 298
ApeKI	GCWGC	2 cut(s)	122, 167
ApoI	RAATTY	1 cut(s)	223
Asp718I	GGTACC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	669
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	2 cut(s)	386, 585
BanI	GGYRCC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	627
BbvI	GCAGC	2 cut(s)	109, 154
BccI	CCATC	1 cut(s)	111
BceAI	ACGGC	2 cut(s)	47, 622
BciT130I	CCWGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	3 cut(s)	138, 171, 710
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	311
BglII	AGATCT	1 cut(s)	589
BisI	GCNGC	2 cut(s)	123, 168
BlsI	GCNGC	2 cut(s)	124, 169
Bme1390I	CCNGG	1 cut(s)	261
BmeT110I	CYCGRG	2 cut(s)	386, 585
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	3 cut(s)	61, 79, 205
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	353
BpuEI	CTTGAG	4 cut(s)	101, 484, 614, 715
BsaBI	GATNNNNATC	1 cut(s)	705
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	3 cut(s)	273, 438, 561
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseNI	ACTGG	3 cut(s)	273, 438, 561
BseXI	GCAGC	2 cut(s)	109, 154
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	3 cut(s)	102, 204, 300
BshNI	GGYRCC	1 cut(s)	77
BsiHKCI	CYCGRG	2 cut(s)	386, 585
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	3 cut(s)	102, 204, 300
BsoBI	CYCGRG	2 cut(s)	386, 585
Bsp143I	GATC	6 cut(s)	130, 559, 589, 646, 700, 706
BspANI	GGCC	3 cut(s)	102, 204, 300
BspLI	GGNNCC	3 cut(s)	61, 79, 205
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	3 cut(s)	138, 567, 695
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	311
BsrI	ACTGG	3 cut(s)	273, 438, 561
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	6 cut(s)	130, 559, 589, 646, 700, 706
BssSI	CACGAG	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	417
Bst6I	CTCTTC	1 cut(s)	278
BstAFI	CTTAAG	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	510, 582
BstDSI	CCRYGG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	669
BstKTI	GATC	6 cut(s)	133, 562, 592, 649, 703, 709
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	6 cut(s)	130, 559, 589, 646, 700, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 173
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	109, 154
BstX2I	RGATCY	2 cut(s)	130, 589
BstYI	RGATCY	2 cut(s)	130, 589
BsuRI	GGCC	3 cut(s)	102, 204, 300
BtgI	CCRYGG	1 cut(s)	63
BtsI	GCAGTG	2 cut(s)	132, 639
BtsIMutI	CAGTG	4 cut(s)	27, 132, 554, 639
Cac8I	GCNNGC	2 cut(s)	510, 582
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	1 cut(s)	669
Cfr13I	GGNCC	1 cut(s)	203
CsiI	ACCWGGT	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	78, 661
CviAII	CATG	3 cut(s)	496, 563, 664
CviQI	GTAC	2 cut(s)	78, 661
DpnI	GATC	6 cut(s)	132, 561, 591, 648, 702, 708
DpnII	GATC	6 cut(s)	130, 559, 589, 646, 700, 706
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco147I	AGGCCT	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	360
Eco88I	CYCGRG	2 cut(s)	386, 585
EcoRII	CCWGG	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	568
FaeI	CATG	3 cut(s)	499, 566, 667
FatI	CATG	3 cut(s)	495, 562, 663
FauNDI	CATATG	3 cut(s)	55, 199, 568
Fnu4HI	GCNGC	2 cut(s)	123, 168
Fsp4HI	GCNGC	2 cut(s)	123, 168
FspBI	CTAG	3 cut(s)	138, 171, 710
GlaI	GCGC	1 cut(s)	668
GluI	GCNGC	2 cut(s)	123, 168
HaeIII	GGCC	3 cut(s)	102, 204, 300
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	669
Hin1II	CATG	3 cut(s)	499, 566, 667
Hin6I	GCGC	1 cut(s)	667
HinP1I	GCGC	1 cut(s)	667
HinfI	GANTC	2 cut(s)	17, 601
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	3 cut(s)	182, 266, 691
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	6 cut(s)	372, 480, 538, 587, 593, 704
Hpy8I	GTNNAC	3 cut(s)	182, 266, 691
HpyAV	CCTTC	2 cut(s)	92, 391
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4V	TGCA	5 cut(s)	125, 176, 512, 566, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 173
Hsp92II	CATG	3 cut(s)	499, 566, 667
HspAI	GCGC	1 cut(s)	667
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	6 cut(s)	130, 559, 589, 646, 700, 706
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	2 cut(s)	109, 154
LweI	GCATC	1 cut(s)	353
MabI	ACCWGGT	1 cut(s)	259
MaeI	CTAG	3 cut(s)	138, 171, 710
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	6 cut(s)	132, 561, 591, 648, 702, 708
MboI	GATC	6 cut(s)	130, 559, 589, 646, 700, 706
MboII	GAAGA	3 cut(s)	295, 526, 539
MflI	RGATCY	2 cut(s)	130, 589
MluCI	AATT	2 cut(s)	147, 223
Mph1103I	ATGCAT	1 cut(s)	568
MseI	TTAA	4 cut(s)	276, 312, 377, 402
MslI	CAYNNNNRTG	1 cut(s)	567
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	2 cut(s)	167, 173
NdeI	CATATG	3 cut(s)	55, 199, 568
NdeII	GATC	6 cut(s)	130, 559, 589, 646, 700, 706
NlaIII	CATG	3 cut(s)	499, 566, 667
NlaIV	GGNNCC	3 cut(s)	61, 79, 205
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	1 cut(s)	667
PaeR7I	CTCGAG	2 cut(s)	386, 585
PceI	AGGCCT	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	17, 601
PkrI	GCNGC	2 cut(s)	124, 169
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	3 cut(s)	61, 79, 205
PspPI	GGNCC	1 cut(s)	203
PspXI	VCTCGAGB	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	2 cut(s)	130, 589
RsaI	GTAC	2 cut(s)	79, 662
RsaNI	GTAC	2 cut(s)	78, 661
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	4 cut(s)	276, 312, 377, 402
SatI	GCNGC	2 cut(s)	123, 168
Sau3AI	GATC	6 cut(s)	130, 559, 589, 646, 700, 706
Sau96I	GGNCC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	8 cut(s)	39, 83, 187, 262, 292, 387, 402, 578
SexAI	ACCWGGT	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	353
SfcI	CTRYAG	1 cut(s)	123
Sfr274I	CTCGAG	2 cut(s)	386, 585
SlaI	CTCGAG	2 cut(s)	386, 585
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	7 cut(s)	116, 311, 386, 463, 585, 593, 694
SmoI	CTYRAG	7 cut(s)	116, 311, 386, 463, 585, 593, 694
Sse9I	AATT	2 cut(s)	147, 223
SseBI	AGGCCT	1 cut(s)	300
SspMI	CTAG	3 cut(s)	138, 171, 710
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	417
TaqI	TCGA	3 cut(s)	387, 586, 657
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	147, 223
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	2 cut(s)	17, 601
Tru1I	TTAA	4 cut(s)	276, 312, 377, 402
Tru9I	TTAA	4 cut(s)	276, 312, 377, 402
TscAI	CASTG	4 cut(s)	27, 132, 561, 639
TseI	GCWGC	2 cut(s)	122, 167
TspDTI	ATGAA	2 cut(s)	234, 357
TspRI	CASTG	4 cut(s)	27, 132, 561, 639
Vha464I	CTTAAG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	667
XhoI	CTCGAG	2 cut(s)	386, 585
XspI	CTAG	3 cut(s)	138, 171, 710
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.