Rh5DG334100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0015331
Physical Location & Seq
Reverse (-)
44202899 .. 44207303
4405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG334100.1

Sequence Viewer

Length: 381 bp
ATGAATTATTTATTTGAAAAAAAAAAAAAAAAAAAAACCACCCTCGAAGCGTACGAGAAAAAAACAAACAGAACCAAATCCAGTCGGCCTCTCCAGTTCTTCAGACTACACAATCCCCCTCTACACAATTCGCTCTCTTCTGGTAACATGGGAAACAAGCCTGCAAAACAAGAAAGGGAAGAAATCTTCTTGAAAGTTGTTCCTCCACTGGATCGTGCATATGTTAGGTGGCTTGCTCGAGATCTTGAGAGGATTCACGGCTTCACACCAGCAAACCCTCGTGCAGTGAAGCCCCCAGATCATTATATTGAGTACATGCGCTTGAATGGGTGGTTAGATGTAGACTTGAGTGATCCTGATCTAGCCCATTTATTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.89

Weight (kDa)

9.86

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtTam9 PF25111 50 - 126 4.2e-46 AtTam9 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22210 AT5G22210
malus_domestica MD03G1152900.v1.1
prunus_persica Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0047291
rosa_laevigata RLG00000034487
rosa_multiflora Rmu_sc0003441.1_g000095
rosa_roxburghii Rroxscaffold_1G00034070
rosa_rugosa Rorug05G0235500
rosa_samantha Rh5AG314500 Rh5BG323200 Rh5CG350400 Rh5DG334100
rosa_wichuraiana Rw5G029400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 342
AclWI GGATC 2 cut(s) 219, 347
AcuI CTGAAG 1 cut(s) 85
AfaI GTAC 2 cut(s) 53, 314
AgsI TTSAA 4 cut(s) 17, 193, 325, 376
AlwI GGATC 2 cut(s) 219, 347
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 321
AvaI CYCGRG 1 cut(s) 237
BauI CACGAG 1 cut(s) 279
BceAI ACGGC 1 cut(s) 274
BfaI CTAG 1 cut(s) 362
BglII AGATCT 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 77
BpuEI CTTGAG 2 cut(s) 266, 367
BsaBI GATNNNNATC 1 cut(s) 357
Bse1I ACTGG 3 cut(s) 81, 94, 213
Bse8I GATNNNNATC 1 cut(s) 357
BseJI GATNNNNATC 1 cut(s) 357
BseNI ACTGG 3 cut(s) 81, 94, 213
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 237
BsiWI CGTACG 1 cut(s) 51
BsnI GGCC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 237
Bsp143I GATC 5 cut(s) 211, 241, 298, 352, 358
BspANI GGCC 1 cut(s) 88
BspPI GGATC 2 cut(s) 219, 347
BsrI ACTGG 3 cut(s) 81, 94, 213
BssMI GATC 5 cut(s) 211, 241, 298, 352, 358
BssSI CACGAG 1 cut(s) 279
Bst2BI CACGAG 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 162, 234
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 5 cut(s) 214, 244, 301, 355, 361
BstMBI GATC 5 cut(s) 211, 241, 298, 352, 358
BstNSI RCATGY 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 206, 291
Cac8I GCNNGC 2 cut(s) 162, 234
CfoI GCGC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 52, 313
CviAII CATG 2 cut(s) 148, 316
CviJI RGCY 6 cut(s) 88, 160, 232, 261, 292, 365
CviKI_1 RGCY 6 cut(s) 88, 160, 232, 261, 292, 365
CviQI GTAC 2 cut(s) 52, 313
DpnI GATC 5 cut(s) 213, 243, 300, 354, 360
DpnII GATC 5 cut(s) 211, 241, 298, 352, 358
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 237
FaeI CATG 2 cut(s) 151, 319
FaiI YATR 5 cut(s) 149, 220, 222, 306, 317
FatI CATG 2 cut(s) 147, 315
FauNDI CATATG 1 cut(s) 220
FblI GTMKAC 1 cut(s) 342
FspBI CTAG 1 cut(s) 362
GlaI GCGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 88
HhaI GCGC 1 cut(s) 321
Hin1II CATG 2 cut(s) 151, 319
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HinfI GANTC 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 4 cut(s) 190, 239, 245, 356
Hpy8I GTNNAC 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 164, 218, 284
Hsp92II CATG 2 cut(s) 151, 319
HspAI GCGC 1 cut(s) 319
Kzo9I GATC 5 cut(s) 211, 241, 298, 352, 358
LpnPI CCDG 8 cut(s) 94, 107, 126, 174, 194, 282, 309, 369
MaeI CTAG 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 143
MalI GATC 5 cut(s) 213, 243, 300, 354, 360
MboI GATC 5 cut(s) 211, 241, 298, 352, 358
MboII GAAGA 4 cut(s) 91, 129, 178, 191
MflI RGATCY 1 cut(s) 241
MluCI AATT 2 cut(s) 4, 127
MnlI CCTC 6 cut(s) 53, 99, 129, 213, 243, 288
NdeI CATATG 1 cut(s) 220
NdeII GATC 5 cut(s) 211, 241, 298, 352, 358
NlaIII CATG 2 cut(s) 151, 319
NspI RCATGY 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 253
Pfl23II CGTACG 1 cut(s) 51
PspLI CGTACG 1 cut(s) 51
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 2 cut(s) 53, 314
RsaNI GTAC 2 cut(s) 52, 313
Sau3AI GATC 5 cut(s) 211, 241, 298, 352, 358
SetI ASST 1 cut(s) 230
Sfr274I CTCGAG 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 237
SmlI CTYRAG 3 cut(s) 237, 245, 346
SmoI CTYRAG 3 cut(s) 237, 245, 346
Sse9I AATT 2 cut(s) 4, 127
SspMI CTAG 1 cut(s) 362
TaqI TCGA 2 cut(s) 45, 238
TasI AATT 2 cut(s) 4, 127
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 1 cut(s) 253
TscAI CASTG 2 cut(s) 213, 291
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 213, 291
XceI RCATGY 1 cut(s) 319
XhoI CTCGAG 1 cut(s) 237
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.