Rh5BG323200

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015331
Physical Location & Seq
Reverse (-)
43438549 .. 43466613
28065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG323200.1

Sequence Viewer

Length: 630 bp
ATGGAGAACAAAGTGGCTTCCCTCTTGGCTTTCGCGTTGGCGATGACTGCCATTGTCCTTAATGCTTCTCCTCCAAATGGGGATATCACATGCCAAACTGCCTTGCTTGTTTTGATGCCATGTAAGCCTTACTTGGAGAGCTCTGGCCCGCCAACCCCTAGCGTTTTCTGTTGTAATGGTGTTCAAAATGTTACCGCTCAGGCTACCACTACCGAGATTCGCAGGAGCCTCTGCGAATGCTTTAAGCAAGCTGCTGCTAGCATGTCAATTGATACTAAAAAACTTGAGCAGCTTCCTCAGTTCTGCCAAGTCTCCATTCCTGTTCCGCTTGACCCCAGCATCGACTGTAGCAAACTACACAATCCCCCTCTACACAATTCGCTCTCTTCTGGTAACATGGGAAACAAGCCTGCAAAACAAGAAAGGGAAGAAATCTTCTTGAAAGTTGTTCCTCCACTGGATCGTGCATATGTTAGGTGGCTTGCTCGAGATCTTGAGAGGATTCACGGCTTCACACCAGCAAACCCTCGTGCAGTGAAGCCCCCAGATCATTATATTGAGTACATGCGCTTGAATGGGTGGTTAGATGTAGACTTGAGTGATCCTGATCTAGCCCATTTATTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

209

Amino Acids

23.08

Weight (kDa)

6.51

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 14 - 107 2.3e-08 Probable lipid transfer
Tryp_alpha_amyl PF00234 31 - 116 2.4e-09 Protease inhibitor/seed storage/LTP family
AtTam9 PF25111 133 - 209 1.5e-45 AtTam9 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22210 AT5G22210
malus_domestica MD03G1152900.v1.1
prunus_persica Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0047291
rosa_laevigata RLG00000034487
rosa_multiflora Rmu_sc0003441.1_g000095
rosa_roxburghii Rroxscaffold_1G00034070
rosa_rugosa Rorug05G0235500
rosa_samantha Rh5AG314500 Rh5BG323200 Rh5CG350400 Rh5DG334100
rosa_wichuraiana Rw5G029400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 591
AccII CGCG 1 cut(s) 35
AciI CCGC 3 cut(s) 149, 195, 326
AclWI GGATC 2 cut(s) 468, 596
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 4 cut(s) 185, 442, 574, 625
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AluBI AGCT 3 cut(s) 141, 251, 292
AluI AGCT 3 cut(s) 141, 251, 292
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 2 cut(s) 468, 596
Ama87I CYCGRG 1 cut(s) 486
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 3 cut(s) 251, 254, 289
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 146
AsuNHI GCTAGC 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 486
BanII GRGCYC 1 cut(s) 143
BauI CACGAG 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 3 cut(s) 238, 241, 301
BceAI ACGGC 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 316
BfaI CTAG 3 cut(s) 159, 258, 611
BfmI CTRYAG 1 cut(s) 346
BglII AGATCT 1 cut(s) 490
BisI GCNGC 3 cut(s) 252, 255, 290
BlsI GCNGC 3 cut(s) 253, 256, 291
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 227
BmsI GCATC 2 cut(s) 105, 348
BmtI GCTAGC 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 198
BpuEI CTTGAG 3 cut(s) 305, 515, 616
BsaBI GATNNNNATC 1 cut(s) 606
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 462
Bse8I GATNNNNATC 1 cut(s) 606
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 212, 311
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 3 cut(s) 238, 241, 301
BseYI CCCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 552
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 486
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 5 cut(s) 460, 490, 547, 601, 607
BspACI CCGC 3 cut(s) 149, 195, 326
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 211, 310
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 227
BspOI GCTAGC 1 cut(s) 261
BspPI GGATC 2 cut(s) 468, 596
BsrBI CCGCTC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 462
BssMI GATC 5 cut(s) 460, 490, 547, 601, 607
BssSI CACGAG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 528
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 1 cut(s) 391
BstC8I GCNNGC 5 cut(s) 149, 249, 259, 411, 483
BstDEI CTNAG 2 cut(s) 198, 297
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 5 cut(s) 463, 493, 550, 604, 610
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 5 cut(s) 460, 490, 547, 601, 607
BstMWI GCNNNNNNNGC 2 cut(s) 47, 124
BstNSI RCATGY 3 cut(s) 93, 265, 568
BstSFI CTRYAG 1 cut(s) 346
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 238, 241, 301
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 2 cut(s) 455, 540
Cac8I GCNNGC 5 cut(s) 149, 249, 259, 411, 483
CfoI GCGC 1 cut(s) 570
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 562
CviAII CATG 5 cut(s) 90, 120, 262, 397, 565
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 2 cut(s) 198, 297
DpnI GATC 5 cut(s) 462, 492, 549, 603, 609
DpnII GATC 5 cut(s) 460, 490, 547, 601, 607
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
Ecl136II GAGCTC 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 486
EcoICRI GAGCTC 1 cut(s) 141
EcoRV GATATC 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 5 cut(s) 93, 123, 265, 400, 568
FaiI YATR 8 cut(s) 91, 121, 263, 398, 469, 471, 555, 566
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 5 cut(s) 89, 119, 261, 396, 564
FauI CCCGC 1 cut(s) 156
FauNDI CATATG 1 cut(s) 469
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 3 cut(s) 252, 255, 290
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 252, 255, 290
FspBI CTAG 3 cut(s) 159, 258, 611
GlaI GCGC 1 cut(s) 569
GluI GCNGC 3 cut(s) 252, 255, 290
GsaI CCCAGC 1 cut(s) 339
HaeIII GGCC 1 cut(s) 147
HhaI GCGC 1 cut(s) 570
Hin1II CATG 5 cut(s) 93, 123, 265, 400, 568
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HinfI GANTC 2 cut(s) 217, 502
Hpy166II GTNNAC 1 cut(s) 592
Hpy188III TCNNGA 4 cut(s) 439, 488, 494, 605
Hpy8I GTNNAC 1 cut(s) 592
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4V TGCA 3 cut(s) 413, 467, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 124
HpyF3I CTNAG 2 cut(s) 198, 297
Hsp92II CATG 5 cut(s) 93, 123, 265, 400, 568
HspAI GCGC 1 cut(s) 568
Kzo9I GATC 5 cut(s) 460, 490, 547, 601, 607
LmnI GCTCC 1 cut(s) 225
Lsp1109I GCAGC 3 cut(s) 238, 241, 301
LweI GCATC 2 cut(s) 105, 348
MaeI CTAG 3 cut(s) 159, 258, 611
MaeIII GTNAC 2 cut(s) 190, 392
MalI GATC 5 cut(s) 462, 492, 549, 603, 609
MbiI CCGCTC 1 cut(s) 197
MboI GATC 5 cut(s) 460, 490, 547, 601, 607
MboII GAAGA 3 cut(s) 378, 427, 440
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 2 cut(s) 267, 376
MnlI CCTC 8 cut(s) 32, 81, 239, 306, 378, 462, 492, 537
MseI TTAA 2 cut(s) 60, 243
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 242
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 47, 124
NdeI CATATG 1 cut(s) 469
NdeII GATC 5 cut(s) 460, 490, 547, 601, 607
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 5 cut(s) 93, 123, 265, 400, 568
NlaIV GGNNCC 1 cut(s) 227
NspI RCATGY 3 cut(s) 93, 265, 568
PaeR7I CTCGAG 1 cut(s) 486
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 2 cut(s) 217, 502
PkrI GCNGC 3 cut(s) 253, 256, 291
Psp124BI GAGCTC 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
SacI GAGCTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 60, 243
SatI GCNGC 3 cut(s) 252, 255, 290
Sau3AI GATC 5 cut(s) 460, 490, 547, 601, 607
Sau96I GGNCC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 143
SetI ASST 4 cut(s) 143, 253, 294, 479
SfaNI GCATC 2 cut(s) 105, 348
SfcI CTRYAG 1 cut(s) 346
Sfr274I CTCGAG 1 cut(s) 486
SlaI CTCGAG 1 cut(s) 486
SmlI CTYRAG 4 cut(s) 284, 486, 494, 595
SmoI CTYRAG 4 cut(s) 284, 486, 494, 595
Sse9I AATT 2 cut(s) 267, 376
SsiI CCGC 3 cut(s) 149, 195, 326
SspMI CTAG 3 cut(s) 159, 258, 611
SstI GAGCTC 1 cut(s) 143
TaaI ACNGT 1 cut(s) 347
TaqI TCGA 2 cut(s) 342, 487
TasI AATT 2 cut(s) 267, 376
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 2 cut(s) 217, 502
Tru1I TTAA 2 cut(s) 60, 243
Tru9I TTAA 2 cut(s) 60, 243
TscAI CASTG 2 cut(s) 462, 540
TseI GCWGC 3 cut(s) 251, 254, 289
TspRI CASTG 2 cut(s) 462, 540
XceI RCATGY 3 cut(s) 93, 265, 568
XhoI CTCGAG 1 cut(s) 486
XmiI GTMKAC 1 cut(s) 591
XspI CTAG 3 cut(s) 159, 258, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.