Rorug05G0235500

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
24688207 .. 24690057
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0235500.1

Sequence Viewer

Length: 1383 bp
ATGAACATCTTCTTCACCTATTCCTCCCATTTCCTCAAACCCAACTCCAAAACCCTCCACTCCATCCCTCTCCTCCTCCACAACCTCACCTCCACCAGACCCATCTCCAAATCCACCTCCATCCCCAAGAAAATGGACCGCGTCCGCGACCACGGCTACGACAACTACATGGAAATCGAGAAGAAGATCCGCAAAGTCCTCAAATTCCAGGCCCTCATTCTCTCCCAGCCCCACCAAATCATCCAAGCCTCTCGCCTCGACATGCTCGCCCGCCGCCTCGGCTTCAAGCAGCACGAGGCCGCCGCCTTCGTCCTCAAGTTCCCTCACATCTTCGAGATTTACGAGCACCCGGTTCAGCGCGTCCTCTATTGCCGGCTGACCCGGAAAGCCCACCTCCAAATCGAGCAGGAGAAGCGGGCCCTGGCGGCCCAGGTCCCCGACGCCGTGACCCGGCTCAGGAAGCTGGTGATGATGTCCAATACGGGTCGGATCCGGCTCGAGCATGTTCGGATTGCCAGGTATGAATTCGGGCTACCCGATGATTTCGAATACTCTGTAGTTCTCAAGTACCCTGAGTATTTCAGATTGTTTAATGCTGATGAGACTAGGAGTAAGTACATTGAGGTAGTTGAGAAGGACCCAAGTTTAGCTGTTTGTGCTATAGAGAAGCTTAGGGAGAGAGAGTATAGGGAGAAGGGGGTTGATGCTGAGGATATAAGGTTTTCATTCATTGTGAATTTTCCGCCGGGGTTTAAGATAGGGAAGTATTATAGGATTGCGGTGTGGAAATGGCAGAGGGTGCCGTATTGGAGTCCTTATGAGGATGTTTCCGGGTATGACATGAGGTCGCTTGAGGCGCAGAAGAGGATGGAGAAGAGGGCCGTGGCGGTGATTCACGAGCTGTTGAATTTGACCGTGGAGAAGAAGATTACGTTGGAGAGGATTGCACATTTTAGAATGGCGATGAATCTGCCGAAGAAGTTGAAGGAGTTTCTTCTGCAGCATCAGGGGATTTTCTACATTTCGACTAGGGGGAATCACGGGAAGCTTCACACGGTGTTTCTTAGGGAGGCTTATAGGAAGGGTGAGTTGGTAGAGCCGAATGATTTGTATTTGGCGAGAAGAAAGTTGGCTGAGTTGGTGTTGATGAGCCCAAGGAAGGCGAAAATGGATAGTGAATTGGTTAGTTACCATAGAGATTGGGGAGATGATGAGAGGGGGTTCGTTGGAAGAGAATGTGGTGAGAATGCTTTCGAAGATTTTGGGGGTTGCAATGATGATAGGCAGAGGAGGGACTCGAATGCGGGTGATGATTATGACTCCGATACAGACGATGGTTCTGATAAAACTCTGGATGAAAAGGATGTCTGTGTAACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

460

Amino Acids

54.11

Weight (kDa)

9.09

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 48 - 385 2.1e-113 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015331)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 799
AccII CGCG 3 cut(s) 141, 147, 360
AclWI GGATC 3 cut(s) 181, 484, 497
AcsI RAATTY 4 cut(s) 203, 524, 736, 907
AcyI GRCGYC 1 cut(s) 441
AdeI CACNNNGTG 1 cut(s) 1057
AfaI GTAC 2 cut(s) 569, 617
AfiI CCNNNNNNNGG 3 cut(s) 450, 456, 1159
AgsI TTSAA 3 cut(s) 286, 907, 985
AhdI GACNNNNNGTC 1 cut(s) 844
AjnI CCWGG 4 cut(s) 207, 420, 429, 515
AjuI GAANNNNNNNTTGG 4 cut(s) 917, 949, 1073, 1105
AluBI AGCT 5 cut(s) 463, 650, 670, 901, 1048
AluI AGCT 5 cut(s) 463, 650, 670, 901, 1048
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 596
AlwI GGATC 3 cut(s) 181, 484, 497
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 5 cut(s) 210, 297, 417, 426, 879
ApaI GGGCCC 1 cut(s) 421
ApeKI GCWGC 2 cut(s) 289, 1000
ApoI RAATTY 4 cut(s) 203, 524, 736, 907
Asp700I GAANNNNTTC 2 cut(s) 8, 1250
AspLEI GCGC 2 cut(s) 360, 859
AspS9I GGNCC 8 cut(s) 136, 211, 417, 418, 427, 433, 637, 879
AsuC2I CCSGG 5 cut(s) 350, 382, 451, 747, 832
AsuHPI GGTGA 7 cut(s) 7, 79, 478, 901, 1097, 1253, 1319
AsuII TTCGAA 2 cut(s) 546, 1254
AvaI CYCGRG 1 cut(s) 497
AvaII GGWCC 3 cut(s) 136, 433, 637
BaeGI GKGCMC 1 cut(s) 421
BamHI GGATCC 1 cut(s) 489
BanI GGYRCC 1 cut(s) 799
BanII GRGCYC 2 cut(s) 421, 1154
BauI CACGAG 2 cut(s) 293, 896
Bbv12I GWGCWC 1 cut(s) 348
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 2 cut(s) 301, 1012
BccI CCATC 5 cut(s) 71, 110, 128, 862, 1328
BceAI ACGGC 4 cut(s) 169, 428, 787, 866
BcgI CGANNNNNNTGC 2 cut(s) 952, 986
BciT130I CCWGG 4 cut(s) 209, 422, 431, 517
BcnI CCSGG 5 cut(s) 350, 382, 451, 747, 832
BcoDI GTCTC 1 cut(s) 596
BfaI CTAG 2 cut(s) 606, 1029
BfmI CTRYAG 3 cut(s) 555, 660, 998
BglI GCCNNNNNGGC 2 cut(s) 279, 425
BisI GCNGC 6 cut(s) 274, 290, 300, 303, 426, 1001
BlsI GCNGC 6 cut(s) 275, 291, 301, 304, 427, 1002
Bme1390I CCNGG 9 cut(s) 209, 350, 382, 422, 431, 451, 517, 747, 832
Bme18I GGWCC 3 cut(s) 136, 433, 637
BmeRI GACNNNNNGTC 1 cut(s) 844
BmeT110I CYCGRG 1 cut(s) 497
BmgT120I GGNCC 8 cut(s) 136, 211, 417, 418, 427, 433, 637, 879
BmiI GGNNCC 5 cut(s) 419, 435, 491, 639, 801
BmrFI CCNGG 9 cut(s) 209, 350, 382, 422, 431, 451, 517, 747, 832
BmsI GCATC 2 cut(s) 694, 1012
Bpu10I CCTNAGC 3 cut(s) 455, 671, 708
Bpu14I TTCGAA 2 cut(s) 546, 1254
BpuEI CTTGAG 3 cut(s) 299, 548, 872
BpuMI CCSGG 5 cut(s) 350, 382, 451, 747, 832
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 8 cut(s) 151, 277, 420, 429, 746, 882, 915, 1154
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 668, 698
Bsc4I CCNNNNNNNGG 3 cut(s) 450, 456, 1159
Bse118I RCCGGY 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 1279
BseBI CCWGG 4 cut(s) 209, 422, 431, 517
BseDI CCNNGG 8 cut(s) 151, 277, 420, 429, 746, 882, 915, 1154
BseGI GGATG 7 cut(s) 63, 120, 240, 829, 873, 1360, 1369
BseLI CCNNNNNNNGG 3 cut(s) 450, 456, 1159
BseMI GCAATG 1 cut(s) 1279
BseMII CTCAG 4 cut(s) 469, 564, 699, 1125
BseRI GAGGAG 3 cut(s) 62, 65, 1303
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 2 cut(s) 301, 1012
BseYI CCCAGC 1 cut(s) 225
Bsh1236I CGCG 3 cut(s) 141, 147, 360
BshFI GGCC 5 cut(s) 212, 299, 419, 428, 881
BshNI GGYRCC 1 cut(s) 799
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 7 cut(s) 350, 373, 382, 451, 493, 746, 831
BslFI GGGAC 2 cut(s) 419, 1307
BslI CCNNNNNNNGG 3 cut(s) 450, 456, 1159
BsmAI GTCTC 1 cut(s) 596
BsmFI GGGAC 2 cut(s) 419, 1307
BsmI GAATGC 2 cut(s) 1252, 1306
BsnI GGCC 5 cut(s) 212, 299, 419, 428, 881
BsoBI CYCGRG 1 cut(s) 497
Bsp119I TTCGAA 2 cut(s) 546, 1254
Bsp120I GGGCCC 1 cut(s) 417
Bsp1286I GDGCHC 3 cut(s) 348, 421, 1154
Bsp143I GATC 2 cut(s) 186, 489
BspANI GGCC 5 cut(s) 212, 299, 419, 428, 881
BspCNI CTCAG 4 cut(s) 468, 565, 700, 1126
BspFNI CGCG 3 cut(s) 141, 147, 360
BspLI GGNNCC 5 cut(s) 419, 435, 491, 639, 801
BspMAI CTGCAG 1 cut(s) 1002
BspPI GGATC 3 cut(s) 181, 484, 497
BspT104I TTCGAA 2 cut(s) 546, 1254
BspT107I GGYRCC 1 cut(s) 799
BsrDI GCAATG 1 cut(s) 1279
BsrFI RCCGGY 1 cut(s) 372
BssAI RCCGGY 1 cut(s) 372
BssECI CCNNGG 8 cut(s) 151, 277, 420, 429, 746, 882, 915, 1154
BssMI GATC 2 cut(s) 186, 489
BssNI GRCGYC 1 cut(s) 441
BssSI CACGAG 2 cut(s) 293, 896
BssT1I CCWWGG 1 cut(s) 1154
Bst2BI CACGAG 2 cut(s) 293, 896
Bst2UI CCWGG 4 cut(s) 209, 422, 431, 517
Bst4CI ACNGT 2 cut(s) 916, 1057
Bst6I CTCTTC 3 cut(s) 857, 869, 1225
BstACI GRCGYC 1 cut(s) 441
BstAPI GCANNNNNTGC 1 cut(s) 799
BstBI TTCGAA 2 cut(s) 546, 1254
BstC8I GCNNGC 4 cut(s) 267, 271, 374, 417
BstDEI CTNAG 6 cut(s) 455, 573, 671, 708, 1064, 1134
BstDSI CCRYGG 3 cut(s) 151, 882, 915
BstF5I GGATG 7 cut(s) 63, 120, 240, 829, 873, 1360, 1369
BstFNI CGCG 3 cut(s) 141, 147, 360
BstHHI GCGC 2 cut(s) 360, 859
BstKTI GATC 2 cut(s) 189, 492
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 2 cut(s) 186, 489
BstMWI GCNNNNNNNGC 8 cut(s) 153, 279, 412, 425, 460, 656, 799, 856
BstNI CCWGG 4 cut(s) 209, 422, 431, 517
BstNSI RCATGY 2 cut(s) 265, 506
BstSCI CCNGG 9 cut(s) 207, 348, 380, 420, 429, 449, 515, 745, 830
BstSFI CTRYAG 3 cut(s) 555, 660, 998
BstSLI GKGCMC 1 cut(s) 421
BstUI CGCG 3 cut(s) 141, 147, 360
BstV1I GCAGC 2 cut(s) 301, 1012
BstX2I RGATCY 2 cut(s) 186, 489
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 2 cut(s) 186, 489
BsuRI GGCC 5 cut(s) 212, 299, 419, 428, 881
BtgI CCRYGG 3 cut(s) 151, 882, 915
BtgZI GCGATG 1 cut(s) 977
BtsCI GGATG 7 cut(s) 63, 120, 240, 829, 873, 1360, 1369
Cac8I GCNNGC 4 cut(s) 267, 271, 374, 417
CfoI GCGC 2 cut(s) 360, 859
Cfr10I RCCGGY 1 cut(s) 372
Cfr13I GGNCC 8 cut(s) 136, 211, 417, 418, 427, 433, 637, 879
CseI GACGC 3 cut(s) 130, 349, 449
Csp6I GTAC 2 cut(s) 568, 616
CviAII CATG 4 cut(s) 169, 262, 503, 841
CviQI GTAC 2 cut(s) 568, 616
DdeI CTNAG 6 cut(s) 455, 573, 671, 708, 1064, 1134
DpnI GATC 2 cut(s) 188, 491
DpnII GATC 2 cut(s) 186, 489
DraIII CACNNNGTG 1 cut(s) 1057
DriI GACNNNNNGTC 1 cut(s) 844
Eam1104I CTCTTC 3 cut(s) 857, 869, 1225
Eam1105I GACNNNNNGTC 1 cut(s) 844
EarI CTCTTC 3 cut(s) 857, 869, 1225
EciI GGCGGA 1 cut(s) 732
Eco130I CCWWGG 1 cut(s) 1154
Eco24I GRGCYC 2 cut(s) 421, 1154
Eco47I GGWCC 3 cut(s) 136, 433, 637
Eco88I CYCGRG 1 cut(s) 497
EcoO109I RGGNCCY 4 cut(s) 211, 418, 433, 637
EcoRI GAATTC 1 cut(s) 524
EcoRII CCWGG 4 cut(s) 207, 420, 429, 515
EcoT14I CCWWGG 1 cut(s) 1154
EcoT38I GRGCYC 2 cut(s) 421, 1154
ErhI CCWWGG 1 cut(s) 1154
FaeI CATG 4 cut(s) 172, 265, 506, 844
FaqI GGGAC 2 cut(s) 419, 1307
FatI CATG 4 cut(s) 168, 261, 502, 840
FauI CCCGC 3 cut(s) 278, 408, 1297
Fnu4HI GCNGC 6 cut(s) 274, 290, 300, 303, 426, 1001
FokI GGATG 7 cut(s) 50, 107, 227, 836, 880, 1367, 1376
FriOI GRGCYC 2 cut(s) 421, 1154
Fsp4HI GCNGC 6 cut(s) 274, 290, 300, 303, 426, 1001
FspBI CTAG 2 cut(s) 606, 1029
GlaI GCGC 2 cut(s) 359, 858
GluI GCNGC 6 cut(s) 274, 290, 300, 303, 426, 1001
GsaI CCCAGC 1 cut(s) 229
HaeIII GGCC 5 cut(s) 212, 299, 419, 428, 881
HapII CCGG 7 cut(s) 350, 373, 382, 451, 493, 746, 831
HgaI GACGC 3 cut(s) 130, 349, 449
HhaI GCGC 2 cut(s) 360, 859
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 4 cut(s) 172, 265, 506, 844
Hin6I GCGC 2 cut(s) 358, 857
HinP1I GCGC 2 cut(s) 358, 857
HindIII AAGCTT 2 cut(s) 668, 1046
HinfI GANTC 6 cut(s) 811, 892, 967, 1036, 1295, 1319
HpaII CCGG 7 cut(s) 350, 373, 382, 451, 493, 746, 831
HphI GGTGA 7 cut(s) 7, 79, 478, 901, 1097, 1253, 1319
Hpy188I TCNGA 5 cut(s) 489, 510, 584, 1324, 1342
Hpy188III TCNNGA 5 cut(s) 178, 334, 457, 896, 1352
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 6 cut(s) 316, 628, 688, 979, 1075, 1153
HpyCH4III ACNGT 2 cut(s) 916, 1057
HpyCH4IV ACGT 1 cut(s) 932
HpyCH4V TGCA 3 cut(s) 947, 1000, 1272
HpyF10VI GCNNNNNNNGC 8 cut(s) 153, 279, 412, 425, 460, 656, 799, 856
HpyF3I CTNAG 6 cut(s) 455, 573, 671, 708, 1064, 1134
HpySE526I ACGT 1 cut(s) 932
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 4 cut(s) 172, 265, 506, 844
HspAI GCGC 2 cut(s) 358, 857
KroI GCCGGC 1 cut(s) 372
KroNI GCCGGC 1 cut(s) 374
Kzo9I GATC 2 cut(s) 186, 489
Lsp1109I GCAGC 2 cut(s) 301, 1012
LweI GCATC 2 cut(s) 694, 1012
MaeI CTAG 2 cut(s) 606, 1029
MaeII ACGT 1 cut(s) 932
MaeIII GTNAC 3 cut(s) 445, 1187, 1372
MalI GATC 2 cut(s) 188, 491
MboI GATC 2 cut(s) 186, 489
MflI RGATCY 2 cut(s) 186, 489
MhlI GDGCHC 3 cut(s) 348, 421, 1154
MluCI AATT 5 cut(s) 203, 524, 736, 907, 1178
MlyI GAGTC 3 cut(s) 820, 1289, 1313
MmeI TCCRAC 3 cut(s) 467, 915, 1207
MroNI GCCGGC 1 cut(s) 372
MroXI GAANNNNTTC 2 cut(s) 8, 1250
MseI TTAA 2 cut(s) 591, 753
MspI CCGG 7 cut(s) 350, 373, 382, 451, 493, 746, 831
MspR9I CCNGG 9 cut(s) 209, 350, 382, 422, 431, 451, 517, 747, 832
Mva1269I GAATGC 2 cut(s) 1252, 1306
MvaI CCWGG 4 cut(s) 209, 422, 431, 517
MvnI CGCG 3 cut(s) 141, 147, 360
MwoI GCNNNNNNNGC 8 cut(s) 153, 279, 412, 425, 460, 656, 799, 856
NaeI GCCGGC 1 cut(s) 374
NciI CCSGG 5 cut(s) 350, 382, 451, 747, 832
NdeII GATC 2 cut(s) 186, 489
NgoMIV GCCGGC 1 cut(s) 372
NlaIII CATG 4 cut(s) 172, 265, 506, 844
NlaIV GGNNCC 5 cut(s) 419, 435, 491, 639, 801
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 2 cut(s) 265, 506
NspV TTCGAA 2 cut(s) 546, 1254
PaeR7I CTCGAG 1 cut(s) 497
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 534
PctI GAATGC 2 cut(s) 1252, 1306
PdiI GCCGGC 1 cut(s) 374
PdmI GAANNNNTTC 2 cut(s) 8, 1250
PfeI GAWTC 3 cut(s) 892, 967, 1036
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 6 cut(s) 275, 291, 301, 304, 427, 1002
PleI GAGTC 3 cut(s) 819, 1289, 1313
PpsI GAGTC 3 cut(s) 819, 1289, 1313
PpuMI RGGWCCY 2 cut(s) 433, 637
Psp5II RGGWCCY 2 cut(s) 433, 637
Psp6I CCWGG 4 cut(s) 207, 420, 429, 515
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 4 cut(s) 207, 420, 429, 515
PspN4I GGNNCC 5 cut(s) 419, 435, 491, 639, 801
PspOMI GGGCCC 1 cut(s) 417
PspPI GGNCC 8 cut(s) 136, 211, 417, 418, 427, 433, 637, 879
PspPPI RGGWCCY 2 cut(s) 433, 637
PspXI VCTCGAGB 1 cut(s) 497
PstI CTGCAG 1 cut(s) 1002
PsuI RGATCY 2 cut(s) 186, 489
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 2 cut(s) 569, 617
RsaNI GTAC 2 cut(s) 568, 616
SaqAI TTAA 2 cut(s) 591, 753
SatI GCNGC 6 cut(s) 274, 290, 300, 303, 426, 1001
Sau3AI GATC 2 cut(s) 186, 489
Sau96I GGNCC 8 cut(s) 136, 211, 417, 418, 427, 433, 637, 879
SchI GAGTC 3 cut(s) 820, 1289, 1313
ScrFI CCNGG 9 cut(s) 209, 350, 382, 422, 431, 451, 517, 747, 832
SduI GDGCHC 3 cut(s) 348, 421, 1154
SfaNI GCATC 2 cut(s) 694, 1012
SfcI CTRYAG 3 cut(s) 555, 660, 998
SfiI GGCCNNNNNGGCC 1 cut(s) 425
Sfr274I CTCGAG 1 cut(s) 497
SfuI TTCGAA 2 cut(s) 546, 1254
SinI GGWCC 3 cut(s) 136, 433, 637
SlaI CTCGAG 1 cut(s) 497
SmlI CTYRAG 4 cut(s) 314, 497, 563, 851
SmoI CTYRAG 4 cut(s) 314, 497, 563, 851
Sse9I AATT 5 cut(s) 203, 524, 736, 907, 1178
SspMI CTAG 2 cut(s) 606, 1029
StyD4I CCNGG 9 cut(s) 207, 348, 380, 420, 429, 449, 515, 745, 830
StyI CCWWGG 1 cut(s) 1154
TaaI ACNGT 2 cut(s) 916, 1057
TaiI ACGT 1 cut(s) 935
TaqI TCGA 9 cut(s) 177, 258, 333, 402, 498, 546, 1025, 1254, 1298
TasI AATT 5 cut(s) 203, 524, 736, 907, 1178
TatI WGTACW 1 cut(s) 615
TauI GCSGC 4 cut(s) 276, 302, 305, 428
TfiI GAWTC 3 cut(s) 892, 967, 1036
Tru1I TTAA 2 cut(s) 591, 753
Tru9I TTAA 2 cut(s) 591, 753
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 2 cut(s) 289, 1000
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 6 cut(s) 17, 537, 714, 718, 980, 1371
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 3 cut(s) 136, 433, 637
XapI RAATTY 4 cut(s) 203, 524, 736, 907
XceI RCATGY 2 cut(s) 265, 506
XhoI CTCGAG 1 cut(s) 497
XmnI GAANNNNTTC 2 cut(s) 8, 1250
XspI CTAG 2 cut(s) 606, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.