Rh5CG350400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015331
Physical Location & Seq
Reverse (-)
40380059 .. 40380292
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG350400.1

Sequence Viewer

Length: 234 bp
ATGGGAAACAAGCCTGCAAAACAGGAAAGGGAAGAAATCTTCTTGAAAGTTGTTCCTCCACTGGATCGTGCATATGTTAGGTGGCTTGCTCGAGATCTTGAGAGGATTCACGGCTTCACACCAGCAAACCCTCGTGCAGTGAAGCCCCCAGATCATTATATCGAGTACATGCGCTTGAATGGGTGGTTAGATGTGGACTTGAGTGATCCTGATCTAGCCCATTTATTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

9.07

Weight (kDa)

6.83

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtTam9 PF25111 1 - 77 7.8e-47 AtTam9 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22210 AT5G22210
malus_domestica MD03G1152900.v1.1
prunus_persica Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0047291
rosa_laevigata RLG00000034487
rosa_multiflora Rmu_sc0003441.1_g000095
rosa_roxburghii Rroxscaffold_1G00034070
rosa_rugosa Rorug05G0235500
rosa_samantha Rh5AG314500 Rh5BG323200 Rh5CG350400 Rh5DG334100
rosa_wichuraiana Rw5G029400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 72, 200
AfaI GTAC 1 cut(s) 167
AgsI TTSAA 3 cut(s) 46, 178, 229
AlwI GGATC 2 cut(s) 72, 200
Ama87I CYCGRG 1 cut(s) 90
AspLEI GCGC 1 cut(s) 174
AvaI CYCGRG 1 cut(s) 90
BauI CACGAG 1 cut(s) 132
BceAI ACGGC 1 cut(s) 127
BfaI CTAG 1 cut(s) 215
BglII AGATCT 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 119, 220
BsaBI GATNNNNATC 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 210
BseNI ACTGG 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 5 cut(s) 64, 94, 151, 205, 211
BspPI GGATC 2 cut(s) 72, 200
BsrI ACTGG 1 cut(s) 66
BssMI GATC 5 cut(s) 64, 94, 151, 205, 211
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 15, 87
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 5 cut(s) 67, 97, 154, 208, 214
BstMBI GATC 5 cut(s) 64, 94, 151, 205, 211
BstNSI RCATGY 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 59, 144
Cac8I GCNNGC 2 cut(s) 15, 87
CfoI GCGC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 166
CviAII CATG 1 cut(s) 169
CviJI RGCY 5 cut(s) 13, 85, 114, 145, 218
CviKI_1 RGCY 5 cut(s) 13, 85, 114, 145, 218
CviQI GTAC 1 cut(s) 166
DpnI GATC 5 cut(s) 66, 96, 153, 207, 213
DpnII GATC 5 cut(s) 64, 94, 151, 205, 211
Eco88I CYCGRG 1 cut(s) 90
FaeI CATG 1 cut(s) 172
FaiI YATR 4 cut(s) 73, 75, 159, 170
FatI CATG 1 cut(s) 168
FauNDI CATATG 1 cut(s) 73
FspBI CTAG 1 cut(s) 215
GlaI GCGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 174
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HinfI GANTC 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 196
Hpy188III TCNNGA 4 cut(s) 43, 92, 98, 209
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 17, 71, 137
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 5 cut(s) 64, 94, 151, 205, 211
LpnPI CCDG 6 cut(s) 8, 27, 47, 135, 162, 222
MaeI CTAG 1 cut(s) 215
MalI GATC 5 cut(s) 66, 96, 153, 207, 213
MboI GATC 5 cut(s) 64, 94, 151, 205, 211
MboII GAAGA 2 cut(s) 31, 44
MflI RGATCY 1 cut(s) 94
MnlI CCTC 3 cut(s) 66, 96, 141
NdeI CATATG 1 cut(s) 73
NdeII GATC 5 cut(s) 64, 94, 151, 205, 211
NlaIII CATG 1 cut(s) 172
NspI RCATGY 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 90
PfeI GAWTC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
Sau3AI GATC 5 cut(s) 64, 94, 151, 205, 211
SetI ASST 1 cut(s) 83
Sfr274I CTCGAG 1 cut(s) 90
SlaI CTCGAG 1 cut(s) 90
SmlI CTYRAG 3 cut(s) 90, 98, 199
SmoI CTYRAG 3 cut(s) 90, 98, 199
SspMI CTAG 1 cut(s) 215
TaqI TCGA 2 cut(s) 91, 162
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 2 cut(s) 66, 144
TspRI CASTG 2 cut(s) 66, 144
XceI RCATGY 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 90
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.