Rh5AG314500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015331
Physical Location & Seq
Reverse (-)
45487798 .. 45488671
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG314500.1

Sequence Viewer

Length: 267 bp
ATGTTTGTTTTCAAGCATCATGCAGTTGGTAACATGGGAAACAAGCCTGCAAAACAAGAAAGGGAAGAAATCTTCTTGAAAGTTGTTCCTCCACTGGATCGTGCATATGTTAGGTGGCTTGCTCGAGATCTTGAGAGGATTCACGGCTTCACACCAGCAAACCCTCGTGCAGTGAAGCCCCCAGATCATTATATTGAGTACATGCGCTTGAATGGGTGGTTAGATGTAGACTTGAGTGATCCTGATCTAGCCTATTTATTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.36

Weight (kDa)

8.06

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtTam9 PF25111 12 - 88 1.6e-45 AtTam9 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22210 AT5G22210
malus_domestica MD03G1152900.v1.1
prunus_persica Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1 Prupe.6G140000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0047291
rosa_laevigata RLG00000034487
rosa_multiflora Rmu_sc0003441.1_g000095
rosa_roxburghii Rroxscaffold_1G00034070
rosa_rugosa Rorug05G0235500
rosa_samantha Rh5AG314500 Rh5BG323200 Rh5CG350400 Rh5DG334100
rosa_wichuraiana Rw5G029400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AclWI GGATC 2 cut(s) 105, 233
AfaI GTAC 1 cut(s) 200
AgsI TTSAA 4 cut(s) 13, 79, 211, 262
AlwI GGATC 2 cut(s) 105, 233
Ama87I CYCGRG 1 cut(s) 123
AspLEI GCGC 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 123
BauI CACGAG 1 cut(s) 165
BceAI ACGGC 1 cut(s) 160
BfaI CTAG 1 cut(s) 248
BglII AGATCT 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 123
BmsI GCATC 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 152, 253
BsaBI GATNNNNATC 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 243
BseJI GATNNNNATC 1 cut(s) 243
BseNI ACTGG 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 123
Bsp143I GATC 5 cut(s) 97, 127, 184, 238, 244
BspPI GGATC 2 cut(s) 105, 233
BsrI ACTGG 1 cut(s) 99
BssMI GATC 5 cut(s) 97, 127, 184, 238, 244
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 48, 120
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 5 cut(s) 100, 130, 187, 241, 247
BstMBI GATC 5 cut(s) 97, 127, 184, 238, 244
BstNSI RCATGY 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 92, 177
Cac8I GCNNGC 2 cut(s) 48, 120
CfoI GCGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 199
CviAII CATG 3 cut(s) 20, 34, 202
CviJI RGCY 5 cut(s) 46, 118, 147, 178, 251
CviKI_1 RGCY 5 cut(s) 46, 118, 147, 178, 251
CviQI GTAC 1 cut(s) 199
DpnI GATC 5 cut(s) 99, 129, 186, 240, 246
DpnII GATC 5 cut(s) 97, 127, 184, 238, 244
Eco88I CYCGRG 1 cut(s) 123
FaeI CATG 3 cut(s) 23, 37, 205
FaiI YATR 6 cut(s) 21, 35, 106, 108, 192, 203
FatI CATG 3 cut(s) 19, 33, 201
FauNDI CATATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 228
FspBI CTAG 1 cut(s) 248
GlaI GCGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 207
Hin1II CATG 3 cut(s) 23, 37, 205
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 229
Hpy188III TCNNGA 4 cut(s) 76, 125, 131, 242
Hpy8I GTNNAC 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 23, 50, 104, 170
Hsp92II CATG 3 cut(s) 23, 37, 205
HspAI GCGC 1 cut(s) 205
Kzo9I GATC 5 cut(s) 97, 127, 184, 238, 244
LpnPI CCDG 5 cut(s) 60, 80, 168, 195, 255
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 29
MalI GATC 5 cut(s) 99, 129, 186, 240, 246
MboI GATC 5 cut(s) 97, 127, 184, 238, 244
MboII GAAGA 2 cut(s) 64, 77
MflI RGATCY 1 cut(s) 127
MnlI CCTC 3 cut(s) 99, 129, 174
NdeI CATATG 1 cut(s) 106
NdeII GATC 5 cut(s) 97, 127, 184, 238, 244
NlaIII CATG 3 cut(s) 23, 37, 205
NspI RCATGY 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 123
PfeI GAWTC 1 cut(s) 139
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
Sau3AI GATC 5 cut(s) 97, 127, 184, 238, 244
SetI ASST 1 cut(s) 116
SfaNI GCATC 1 cut(s) 25
Sfr274I CTCGAG 1 cut(s) 123
SlaI CTCGAG 1 cut(s) 123
SmlI CTYRAG 3 cut(s) 123, 131, 232
SmoI CTYRAG 3 cut(s) 123, 131, 232
SspMI CTAG 1 cut(s) 248
TaqI TCGA 1 cut(s) 124
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 1 cut(s) 139
TscAI CASTG 2 cut(s) 99, 177
TspRI CASTG 2 cut(s) 99, 177
XceI RCATGY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.