MD03G1193100.v1.1

Indole-3-acetate O-methyltransferase 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
26559508 .. 26563577
4070 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1193100.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGGCTCCCAAGGGAGATAACCTTGTAGTTTCTAGTATAAAGCTCGAGAAGATATTTAGCATGAAAGGAGGCAAAGGAGAGTCCAGCTATGCCAACAATTCCCAAGCTCAGGCCATACATGCAAGATCTATGCTTCACCTGCTAAAAGAAACCCTAGACAGCGTGCAACTGAGCTCCCCAGAAGTGCCATTTGTGGTTGTGGACCTTGGATGCTCAAGCGGAAGCAACACCATCTACATAATAGATGTGATCATCAAACACATGACCAAGCGCTATGAGGACTTGGGAGGTGACCCCCCTGAGTTCTCGGCATTTTTCTCTGATCTCCCCAGCAATGACTTCAACACCCTCTTCCAGCTTATCCCTCCTATGGCCAACCACGGCGGTAGCATGGAGGAGACCCTCGCTGCCGACAACCACCGCTCCTACTTTGCTGCTGGCGTCCCAGGTTCATTTTACCGGCGGCTCTTCCCGTCGAGGTCCATTGACCTTTTTCACTCAGCGTTCTCCTTGCATTGGCTCTCTCAGGTGCCAGAGAGTGTGCTGGACAAAAGATCAGCAGCCTACAACAAGGGAAGGGTGTTTATCCATGGTGCGAATGAGAGCACAGTCACTGCATACAAGAAGCAGTTTCAGACAGACTTGGCAAGCTTTCTCAGGTCGAGAGCCAAGGAGCTCAAGAAAGGAGGCTCCATGTTTCTTGTTTGCTTGGGTAGGACCTCAGTGGACCCTACTGACCAAAGTGGCCCAGGCCTTCTCTTTGGGACTCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGGCTTATCACTAGTGAGAAACGTGACAGTTTCAACATTCCTGTGTACGCATCAAGTTTACAAGACTTCAAGGAGGTAGTAGAGGCTGATGGCTCATTCATCATAAACAAGCTTGAGATTTTCAAAGGAGGAAGCCCCCTTGTTGTGAGCCAACCCGATGATGCCGCTGAAGTCGGTCGAGCCCTTGCCAACAGTTGTAGGAGCGTGGCCGGAGTCCTCATCGATGCACACATCGGTGACCACCTCGGCAATGAATTGTTCTCAAGGGTGGAGAAAAGGGGCACATGCCAAGCCAAAGAGCTACTGGAGAAGTTACAATTCTTTCACATAGTGGCCTCCCTTTCTCTAGCTTAA

Protein Analysis

386

Amino Acids

42.16

Weight (kDa)

5.96

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 61 - 382 6.9e-103 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 529
AccBSI CCGCTC 1 cut(s) 423
AciI CCGC 5 cut(s) 219, 384, 421, 463, 969
AcoI YGGCCR 2 cut(s) 372, 1011
AcuI CTGAAG 1 cut(s) 993
AcyI GRCGYC 1 cut(s) 441
AdeI CACNNNGTG 1 cut(s) 1135
AfaI GTAC 1 cut(s) 851
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 3 cut(s) 109, 370, 516
AgsI TTSAA 4 cut(s) 343, 838, 874, 928
AhlI ACTAGT 1 cut(s) 815
AjnI CCWGG 2 cut(s) 445, 748
AleI CACNNNNGTG 1 cut(s) 1038
Alw21I GWGCWC 3 cut(s) 176, 608, 678
Alw26I GTCTC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 614
Ama87I CYCGRG 1 cut(s) 44
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 6 cut(s) 111, 372, 745, 751, 1011, 1137
ApeKI GCWGC 3 cut(s) 407, 434, 560
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 5 cut(s) 202, 480, 717, 727, 746
AsuHPI GGTGA 3 cut(s) 128, 302, 1052
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 4 cut(s) 202, 480, 717, 727
BaeGI GKGCMC 1 cut(s) 1088
BalI TGGCCA 1 cut(s) 374
BanI GGYRCC 1 cut(s) 529
BanII GRGCYC 3 cut(s) 176, 678, 988
Bbv12I GWGCWC 3 cut(s) 176, 608, 678
BbvI GCAGC 3 cut(s) 394, 421, 572
BccI CCATC 2 cut(s) 239, 887
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 2 cut(s) 447, 750
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 392
BcuI ACTAGT 1 cut(s) 815
BfaI CTAG 4 cut(s) 33, 155, 816, 1151
BfoI RGCGCY 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 147
BglII AGATCT 1 cut(s) 125
BisI GCNGC 5 cut(s) 408, 435, 464, 561, 969
BlsI GCNGC 5 cut(s) 409, 436, 465, 562, 970
Bme1390I CCNGG 2 cut(s) 447, 750
Bme18I GGWCC 4 cut(s) 202, 480, 717, 727
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 5 cut(s) 202, 480, 717, 727, 746
BmiI GGNNCC 4 cut(s) 6, 531, 691, 729
BmrFI CCNGG 2 cut(s) 447, 750
BmsI GCATC 5 cut(s) 200, 769, 863, 955, 1018
BpmI CTGGAG 1 cut(s) 1130
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 4 cut(s) 199, 662, 938, 1051
Bsa29I ATCGAT 1 cut(s) 1026
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 8 cut(s) 9, 205, 379, 445, 589, 669, 748, 1048
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 370, 516
Bse118I RCCGGY 1 cut(s) 459
Bse1I ACTGG 1 cut(s) 1113
Bse3DI GCAATG 2 cut(s) 340, 1060
BseBI CCWGG 2 cut(s) 447, 750
BseCI ATCGAT 1 cut(s) 1026
BseDI CCNNGG 8 cut(s) 9, 205, 379, 445, 589, 669, 748, 1048
BseGI GGATG 3 cut(s) 215, 784, 793
BseLI CCNNNNNNNGG 3 cut(s) 109, 370, 516
BseMI GCAATG 2 cut(s) 340, 1060
BseMII CTCAG 7 cut(s) 122, 161, 291, 513, 539, 670, 735
BseNI ACTGG 1 cut(s) 1113
BseRI GAGGAG 1 cut(s) 410
BseSI GKGCMC 1 cut(s) 1088
BseXI GCAGC 3 cut(s) 394, 421, 572
BseYI CCCAGC 1 cut(s) 329
Bsh1285I CGRYCG 1 cut(s) 982
BshFI GGCC 6 cut(s) 113, 374, 747, 753, 1013, 1139
BshNI GGYRCC 1 cut(s) 529
BshVI ATCGAT 1 cut(s) 1026
BsiEI CGRYCG 1 cut(s) 982
BsiHKAI GWGCWC 3 cut(s) 176, 608, 678
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 460, 1014
BslFI GGGAC 2 cut(s) 428, 778
BslI CCNNNNNNNGG 3 cut(s) 109, 370, 516
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 2 cut(s) 428, 778
BsnI GGCC 6 cut(s) 113, 374, 747, 753, 1013, 1139
Bso31I GGTCTC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 5 cut(s) 176, 608, 678, 988, 1088
Bsp143I GATC 5 cut(s) 125, 249, 322, 554, 790
Bsp19I CCATGG 1 cut(s) 589
BspACI CCGC 5 cut(s) 219, 384, 421, 463, 969
BspANI GGCC 6 cut(s) 113, 374, 747, 753, 1013, 1139
BspCNI CTCAG 7 cut(s) 121, 162, 292, 512, 538, 669, 734
BspDI ATCGAT 1 cut(s) 1026
BspLI GGNNCC 4 cut(s) 6, 531, 691, 729
BspMI ACCTGC 1 cut(s) 147
BspQI GCTCTTC 1 cut(s) 473
BspT107I GGYRCC 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 423
BsrDI GCAATG 2 cut(s) 340, 1060
BsrFI RCCGGY 1 cut(s) 459
BsrI ACTGG 1 cut(s) 1113
BssAI RCCGGY 1 cut(s) 459
BssECI CCNNGG 8 cut(s) 9, 205, 379, 445, 589, 669, 748, 1048
BssMI GATC 5 cut(s) 125, 249, 322, 554, 790
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 4 cut(s) 9, 205, 589, 669
Bst2UI CCWGG 2 cut(s) 447, 750
Bst4CI ACNGT 3 cut(s) 610, 833, 998
Bst6I CTCTTC 2 cut(s) 356, 473
BstACI GRCGYC 1 cut(s) 441
BstC8I GCNNGC 3 cut(s) 164, 439, 649
BstDEI CTNAG 7 cut(s) 108, 170, 300, 499, 525, 656, 721
BstDSI CCRYGG 2 cut(s) 379, 589
BstEII GGTNACC 2 cut(s) 290, 1040
BstF5I GGATG 3 cut(s) 215, 784, 793
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 5 cut(s) 128, 252, 325, 557, 793
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 5 cut(s) 125, 249, 322, 554, 790
BstMCI CGRYCG 1 cut(s) 982
BstMWI GCNNNNNNNGC 2 cut(s) 119, 139
BstNI CCWGG 2 cut(s) 447, 750
BstNSI RCATGY 2 cut(s) 122, 1092
BstPI GGTNACC 2 cut(s) 290, 1040
BstSCI CCNGG 2 cut(s) 445, 748
BstSLI GKGCMC 1 cut(s) 1088
BstV1I GCAGC 3 cut(s) 394, 421, 572
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 1026
BsuRI GGCC 6 cut(s) 113, 374, 747, 753, 1013, 1139
BsuTUI ATCGAT 1 cut(s) 1026
BtgI CCRYGG 2 cut(s) 379, 589
BtsCI GGATG 3 cut(s) 215, 784, 793
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 2 cut(s) 612, 729
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 3 cut(s) 164, 439, 649
CaiI CAGNNNCTG 1 cut(s) 614
CfoI GCGC 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 459
Cfr13I GGNCC 5 cut(s) 202, 480, 717, 727, 746
ClaI ATCGAT 1 cut(s) 1026
CseI GACGC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 850
CviAII CATG 7 cut(s) 61, 119, 262, 391, 590, 694, 1089
CviQI GTAC 1 cut(s) 850
DdeI CTNAG 7 cut(s) 108, 170, 300, 499, 525, 656, 721
DpnI GATC 5 cut(s) 127, 251, 324, 556, 792
DpnII GATC 5 cut(s) 125, 249, 322, 554, 790
DraIII CACNNNGTG 1 cut(s) 1135
EaeI YGGCCR 2 cut(s) 372, 1011
Eam1104I CTCTTC 2 cut(s) 356, 473
EarI CTCTTC 2 cut(s) 356, 473
Ecl136II GAGCTC 2 cut(s) 174, 676
Eco130I CCWWGG 4 cut(s) 9, 205, 589, 669
Eco147I AGGCCT 1 cut(s) 753
Eco24I GRGCYC 3 cut(s) 176, 678, 988
Eco31I GGTCTC 1 cut(s) 392
Eco47I GGWCC 4 cut(s) 202, 480, 717, 727
Eco47III AGCGCT 1 cut(s) 272
Eco53kI GAGCTC 2 cut(s) 174, 676
Eco57I CTGAAG 1 cut(s) 993
Eco88I CYCGRG 1 cut(s) 44
Eco91I GGTNACC 2 cut(s) 290, 1040
EcoICRI GAGCTC 2 cut(s) 174, 676
EcoO109I RGGNCCY 1 cut(s) 717
EcoO65I GGTNACC 2 cut(s) 290, 1040
EcoRII CCWGG 2 cut(s) 445, 748
EcoT14I CCWWGG 4 cut(s) 9, 205, 589, 669
EcoT38I GRGCYC 3 cut(s) 176, 678, 988
ErhI CCWWGG 4 cut(s) 9, 205, 589, 669
FaeI CATG 7 cut(s) 64, 122, 265, 394, 593, 697, 1092
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FaqI GGGAC 2 cut(s) 428, 778
FatI CATG 7 cut(s) 60, 118, 261, 390, 589, 693, 1088
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 5 cut(s) 408, 435, 464, 561, 969
FokI GGATG 3 cut(s) 222, 791, 800
FriOI GRGCYC 3 cut(s) 176, 678, 988
Fsp4HI GCNGC 5 cut(s) 408, 435, 464, 561, 969
FspBI CTAG 4 cut(s) 33, 155, 816, 1151
GlaI GCGC 1 cut(s) 272
GluI GCNGC 5 cut(s) 408, 435, 464, 561, 969
GsaI CCCAGC 1 cut(s) 333
GsuI CTGGAG 1 cut(s) 1130
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 6 cut(s) 113, 374, 747, 753, 1013, 1139
HapII CCGG 2 cut(s) 460, 1014
HgaI GACGC 1 cut(s) 430
HhaI GCGC 1 cut(s) 273
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 7 cut(s) 64, 122, 265, 394, 593, 697, 1092
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 649, 914
HinfI GANTC 3 cut(s) 80, 766, 1017
HpaII CCGG 2 cut(s) 460, 1014
HphI GGTGA 3 cut(s) 128, 302, 1052
Hpy166II GTNNAC 4 cut(s) 202, 727, 850, 863
Hpy188I TCNGA 2 cut(s) 322, 636
Hpy188III TCNNGA 4 cut(s) 46, 663, 679, 776
Hpy8I GTNNAC 4 cut(s) 202, 727, 850, 863
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 2 cut(s) 570, 764
HpyCH4III ACNGT 3 cut(s) 610, 833, 998
HpyCH4IV ACGT 1 cut(s) 826
HpyCH4V TGCA 5 cut(s) 122, 166, 514, 617, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 139
HpyF3I CTNAG 7 cut(s) 108, 170, 300, 499, 525, 656, 721
HpySE526I ACGT 1 cut(s) 826
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 7 cut(s) 64, 122, 265, 394, 593, 697, 1092
HspAI GCGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 5 cut(s) 125, 249, 322, 554, 790
LguI GCTCTTC 1 cut(s) 473
LmnI GCTCC 6 cut(s) 10, 179, 428, 673, 695, 1005
Lsp1109I GCAGC 3 cut(s) 394, 421, 572
LweI GCATC 5 cut(s) 200, 769, 863, 955, 1018
MaeI CTAG 4 cut(s) 33, 155, 816, 1151
MaeII ACGT 1 cut(s) 826
MaeIII GTNAC 5 cut(s) 290, 610, 827, 1040, 1116
MalI GATC 5 cut(s) 127, 251, 324, 556, 792
MbiI CCGCTC 1 cut(s) 423
MboI GATC 5 cut(s) 125, 249, 322, 554, 790
MboII GAAGA 3 cut(s) 61, 343, 460
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 5 cut(s) 176, 608, 678, 988, 1088
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 3 cut(s) 97, 1058, 1121
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 3 cut(s) 89, 760, 1026
Mox20I TGGCCA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 374
MseI TTAA 1 cut(s) 1156
MslI CAYNNNNRTG 2 cut(s) 845, 1038
Msp20I TGGCCA 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 971
MspI CCGG 2 cut(s) 460, 1014
MspR9I CCNGG 2 cut(s) 447, 750
MvaI CCWGG 2 cut(s) 447, 750
MwoI GCNNNNNNNGC 2 cut(s) 119, 139
NcoI CCATGG 1 cut(s) 589
NdeII GATC 5 cut(s) 125, 249, 322, 554, 790
NlaIII CATG 7 cut(s) 64, 122, 265, 394, 593, 697, 1092
NlaIV GGNNCC 4 cut(s) 6, 531, 691, 729
NmeAIII GCCGAG 2 cut(s) 287, 1029
NmuCI GTSAC 4 cut(s) 290, 610, 827, 1040
NspI RCATGY 2 cut(s) 122, 1092
OliI CACNNNNGTG 1 cut(s) 1038
PaeR7I CTCGAG 1 cut(s) 44
PaqCI CACCTGC 1 cut(s) 147
PceI AGGCCT 1 cut(s) 753
PciSI GCTCTTC 1 cut(s) 473
PkrI GCNGC 5 cut(s) 409, 436, 465, 562, 970
PleI GAGTC 3 cut(s) 88, 760, 1025
PpsI GAGTC 3 cut(s) 88, 760, 1025
PpuMI RGGWCCY 1 cut(s) 717
Psp124BI GAGCTC 2 cut(s) 176, 678
Psp5II RGGWCCY 1 cut(s) 717
Psp6I CCWGG 2 cut(s) 445, 748
PspEI GGTNACC 2 cut(s) 290, 1040
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 2 cut(s) 445, 748
PspN4I GGNNCC 4 cut(s) 6, 531, 691, 729
PspPI GGNCC 5 cut(s) 202, 480, 717, 727, 746
PspPPI RGGWCCY 1 cut(s) 717
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 1 cut(s) 851
RsaNI GTAC 1 cut(s) 850
RseI CAYNNNNRTG 2 cut(s) 845, 1038
SacI GAGCTC 2 cut(s) 176, 678
SapI GCTCTTC 1 cut(s) 473
SaqAI TTAA 1 cut(s) 1156
SatI GCNGC 5 cut(s) 408, 435, 464, 561, 969
Sau3AI GATC 5 cut(s) 125, 249, 322, 554, 790
Sau96I GGNCC 5 cut(s) 202, 480, 717, 727, 746
SchI GAGTC 3 cut(s) 89, 760, 1026
ScrFI CCNGG 2 cut(s) 447, 750
SduI GDGCHC 5 cut(s) 176, 608, 678, 988, 1088
SfaNI GCATC 5 cut(s) 200, 769, 863, 955, 1018
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 4 cut(s) 202, 480, 717, 727
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 845, 1038
SmlI CTYRAG 5 cut(s) 44, 214, 677, 917, 1066
SmoI CTYRAG 5 cut(s) 44, 214, 677, 917, 1066
SpeI ACTAGT 1 cut(s) 815
Sse9I AATT 3 cut(s) 97, 1058, 1121
SseBI AGGCCT 1 cut(s) 753
SsiI CCGC 5 cut(s) 219, 384, 421, 463, 969
SspMI CTAG 4 cut(s) 33, 155, 816, 1151
SstI GAGCTC 2 cut(s) 176, 678
StuI AGGCCT 1 cut(s) 753
StyD4I CCNGG 2 cut(s) 445, 748
StyI CCWWGG 4 cut(s) 9, 205, 589, 669
TaaI ACNGT 3 cut(s) 610, 833, 998
TaiI ACGT 1 cut(s) 829
TaqI TCGA 5 cut(s) 45, 476, 662, 982, 1026
TaqII GACCGA 1 cut(s) 968
TasI AATT 3 cut(s) 97, 1058, 1121
TauI GCSGC 2 cut(s) 466, 971
Tru1I TTAA 1 cut(s) 1156
Tru9I TTAA 1 cut(s) 1156
TscAI CASTG 2 cut(s) 619, 729
TseFI GTSAC 4 cut(s) 290, 610, 827, 1040
TseI GCWGC 3 cut(s) 407, 434, 560
Tsp45I GTSAC 4 cut(s) 290, 610, 827, 1040
TspDTI ATGAA 4 cut(s) 77, 441, 892, 1071
TspRI CASTG 2 cut(s) 619, 729
VpaK11BI GGWCC 4 cut(s) 202, 480, 717, 727
XceI RCATGY 2 cut(s) 122, 1092
XcmI CCANNNNNNNNNTGG 1 cut(s) 1105
XhoI CTCGAG 1 cut(s) 44
XspI CTAG 4 cut(s) 33, 155, 816, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.