Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008751

Physical Location & Seq

Genomic Coordinates Reverse (-)

19042902 .. 19048688

Gene Structure 5787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0193700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGGGCCTGCAATTTCAATTGCAGATGAGTTGGCAGCCGAGTCTACTGAATCAGAAGCGGAAGACAGGCCCGCCTCTAGGGTTGAAGAACCTCGGCAACTCTTGCTACCTCAACAGCGTCCTTCAGTGCCTCACCTACACCCCTCCTCTCGCCAATTTCTGCCTCCGAAACCAGCACTCCTCCCTCTGTGACTCTTCCGACAAGGAACGCAAGCGCGAGTGTCCGTTTTGCATGCTGGAGAGGCGAATAGTCCGCTCCCTCAGTGTGGATCTCAGTCTAGATGCGCCGGCGAAGATTCGGAGCTGTCTGAATATTTTCGCCGAACACTTTCGCCACGGTCGTCAGGAAGACGCTCATGAGTTCCTGCGTTACGTTATTGATGCTTGCCACAACACTTGCCTTCGCCTGAAGAAGCTCCGGCGCAACATCACCGGCAATGGTTTGTCCAACGGCAATGGCAATGGCAATGGCCACGCCAACGGGAATGGTCAGGCCAACGGCAAAGCCAGTGGGACGGCTCCGGCGTCGTCCACGGTGGTGATGGAGATATTCGGGGGAGCTTTGCAGAGCCAGGTGAAGTGTCTATCCTGTGGCACAGAGTCCAATAAGGTTGATGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAATTCGCTTAAAGACGCCTTGCAAAGGTTCTTCCAGTCTGAGCTTTTGGATGGCCAGAACAAGTACAAGTGCGAAAGATGTAACAAATTGGTGGCGGCTAGGAAGCAAATGTCTATACTTCAAGCACCTAATGTTCTTGTAATCCAACTTAAGAGATTTGAGGGTCTATTGGGTGGGAAGATTGATAAATCCATTGCATTTGAAGAGTTTTTGGTGCTGTCGAGCTTCATGTGCAAAACAAGTCAGGATCCACGTCCAGAATATAAGCTTTGTGGTACTATTGTGCATTCTGGTTTTTCACCCGAGTCTGGTCATTATTATGCATATATTAAGGATGCGATGGGTCGTTGGTATTGCTGCAACGATCAGTTTGTCTCTCTTTCAACTTTGCAAGAGGTCTTATCTGAAAAGGTTTACATCCTTTTCTTCTCCCGTACCAACCAAAGGTCGGTTAATGCTGCTTCAAATGGGTTAAGGTCCCAAAATTGTAATGGTCATGAAGCTTCCAAAAAACCGAAGCCTGCTCTTCCACCAAAAGGACCACAAATAAAAATTTCTGAACAGTCTTCTTGGAAGGATATTTCTACTAAATCTCAGGTTGATAAAGTGCCTTCGGGCCCACGGATGAAGTTTAACATCAATGGAAACTTGAGCACCAAAAGAACTCCTGCAACTGATAATGGAAACATTGCTTACAAGAACCAATCTGTGGGATCAAATGGGGAGGTGAAGGACTCGGTTAGTTTGGACAAAAGTGAGAAAGCCAAGATGACTTTGATAAATGGGGATGGTTTGAACGGGAATATAACATCTGATACTGTTGAAGCTAACAACACCCAACCATTTTCTTCACCAATAGAAAATGGTAGTGTGGGTTCAGTGAAATCTGAACTCTCTGAAGTTACTGCTTCAGTGAAAACCGAACTCCCTGATCACTCTGAATTGGATAGCAGTGGTCCCAATGGTCACTTCATGGTCCTTGGGCCCAAAAGGAAATCTCGGGGTTCATGCATTTTGTTTGAACATGATGCTCAATCTCTGGAAAAAGTTGAAGAATTGAAGGCAGGTCTCAAGAAAGAAGCTCTCTCAGTTTTGCGCTCATGCGGTTGGGCAGATGAGGTTTTCAGTTTTATGCGTTCCCGGAAGAGGTTATGTGTAGATCAAGTTGGACTCACTCAGAATGGTGATGAAGCAAAGAAACTGTTGATCAGGGATTCCAAATCAACTTTTATTTCAAAGATACCCGAGTCTTTGAAGGGGGGCTTCATCAAACGTATTAAATCATTTAGCCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003002 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0009798 GO:0009943 GO:0009944 GO:0009955 GO:0010252 GO:0016740 GO:0016741 GO:0032259 GO:0032501 GO:0032502 GO:0042592 GO:0042802 GO:0043167 GO:0043169 GO:0046872 GO:0048856 GO:0048878 GO:0051749 GO:0065001 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

649

Amino Acids

71.61

Weight (kDa)

9.14

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	27 - 360	4.1e-55	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	27 - 341	3.1e-18	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55250 AT5G55250
fragaria_vesca	FvH4_3g23570 FvH4_3g23570
malus_domestica	MD03G1193100.v1.1 MD11G1209300.v1.1
prunus_persica	Prupe.2G265900_v2.0.a1 Prupe.4G223700_v2.0.a1 Prupe.4G223900_v2.0.a1 Prupe.4G223900_v2.0.a1
pyrus_communis	pycom03g14570 pycom11g18470
rosa_chinensis	RchiOBHm_Chr5g0041561
rosa_laevigata	RLG00000034080
rosa_multiflora	Rmu_sc0003051.1_g000007
rosa_roxburghii	Rroxscaffold_1G00038940
rosa_rugosa	Rorug05G0193700 Rorug05G0193700
rosa_samantha	Rh5BG283800 Rh5BG284700 Rh5CG316600 Rh5DG293500
rosa_wichuraiana	Rw5G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1706
AccB7I	CCANNNNNTGG	1 cut(s)	1360
AccBSI	CCGCTC	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	43
AccII	CGCG	1 cut(s)	216
AciI	CCGC	5 cut(s)	58, 71, 253, 746, 1755
AclWI	GGATC	4 cut(s)	276, 893, 906, 1372
AcoI	YGGCCR	2 cut(s)	469, 703
AcsI	RAATTY	1 cut(s)	1203
AcuI	CTGAAG	4 cut(s)	107, 428, 1545, 1569
AcyI	GRCGYC	2 cut(s)	524, 666
AfaI	GTAC	3 cut(s)	716, 928, 1087
AfiI	CCNNNNNNNGG	9 cut(s)	77, 265, 675, 959, 1095, 1099, 1187, 1360, 1797
AflII	CTTAAG	1 cut(s)	800
AjiI	CACGTC	1 cut(s)	905
AjnI	CCWGG	1 cut(s)	570
AjuI	GAANNNNNNNTTGG	2 cut(s)	1604, 1636
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	9 cut(s)	303, 415, 560, 694, 876, 919, 1154, 1478, 1733
AluI	AGCT	9 cut(s)	303, 415, 560, 694, 876, 919, 1154, 1478, 1733
Alw21I	GWGCWC	1 cut(s)	1307
Alw26I	GTCTC	2 cut(s)	1030, 1724
AlwI	GGATC	4 cut(s)	276, 893, 906, 1372
Ama87I	CYCGRG	3 cut(s)	953, 1650, 1895
AoxI	GGCC	7 cut(s)	4, 67, 469, 492, 703, 1267, 1634
ApaI	GGGCCC	2 cut(s)	1271, 1638
ApeKI	GCWGC	3 cut(s)	34, 1008, 1109
ApoI	RAATTY	1 cut(s)	1203
Asp700I	GAANNNNTTC	2 cut(s)	314, 327
AspLEI	GCGC	4 cut(s)	216, 286, 423, 1749
AsuC2I	CCSGG	1 cut(s)	1792
AsuHPI	GGTGA	8 cut(s)	124, 421, 550, 586, 942, 1390, 1494, 1847
AvaI	CYCGRG	3 cut(s)	953, 1650, 1895
AvaII	GGWCC	4 cut(s)	1128, 1190, 1607, 1627
BaeGI	GKGCMC	2 cut(s)	1271, 1638
BaeI	ACNNNNGTAYC	4 cut(s)	918, 951, 1883, 1916
BalI	TGGCCA	2 cut(s)	471, 705
BamHI	GGATCC	1 cut(s)	898
BanII	GRGCYC	2 cut(s)	1271, 1638
BbsI	GAAGAC	3 cut(s)	68, 354, 1209
Bbv12I	GWGCWC	1 cut(s)	1307
BbvI	GCAGC	3 cut(s)	46, 995, 1096
BccI	CCATC	4 cut(s)	535, 695, 985, 1433
BceAI	ACGGC	3 cut(s)	466, 514, 531
BciT130I	CCWGG	1 cut(s)	572
BclI	TGATCA	2 cut(s)	1582, 1857
BcnI	CCSGG	1 cut(s)	1792
BcoDI	GTCTC	2 cut(s)	1030, 1724
BfaI	CTAG	3 cut(s)	77, 278, 750
BfrI	CTTAAG	1 cut(s)	800
BfuAI	ACCTGC	1 cut(s)	1706
BisI	GCNGC	4 cut(s)	35, 747, 1009, 1110
BlsI	GCNGC	4 cut(s)	36, 748, 1010, 1111
Bme1390I	CCNGG	2 cut(s)	572, 1792
Bme18I	GGWCC	4 cut(s)	1128, 1190, 1607, 1627
BmeT110I	CYCGRG	3 cut(s)	953, 1650, 1895
BmgBI	CACGTC	1 cut(s)	905
BmiI	GGNNCC	6 cut(s)	519, 900, 1130, 1269, 1609, 1636
BmrFI	CCNGG	2 cut(s)	572, 1792
BmsI	GCATC	4 cut(s)	271, 370, 976, 1669
BpiI	GAAGAC	3 cut(s)	68, 354, 1209
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	2 cut(s)	1321, 1706
BpuMI	CCSGG	1 cut(s)	1792
BsaHI	GRCGYC	2 cut(s)	524, 666
BsaI	GGTCTC	1 cut(s)	1724
BsaJI	CCNNGG	5 cut(s)	91, 334, 531, 1271, 1630
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	9 cut(s)	77, 265, 675, 959, 1095, 1099, 1187, 1360, 1797
Bse118I	RCCGGY	2 cut(s)	286, 431
Bse1I	ACTGG	2 cut(s)	507, 685
Bse3DI	GCAATG	6 cut(s)	442, 460, 466, 472, 843, 1338
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	5 cut(s)	91, 334, 531, 1271, 1630
BseGI	GGATG	5 cut(s)	706, 991, 1068, 1281, 1444
BseLI	CCNNNNNNNGG	9 cut(s)	77, 265, 675, 959, 1095, 1099, 1187, 1360, 1797
BseMI	GCAATG	6 cut(s)	442, 460, 466, 472, 843, 1338
BseMII	CTCAG	6 cut(s)	274, 286, 681, 1259, 1752, 1841
BseNI	ACTGG	2 cut(s)	507, 685
BseRI	GAGGAG	2 cut(s)	135, 169
BseSI	GKGCMC	2 cut(s)	1271, 1638
BseXI	GCAGC	3 cut(s)	46, 995, 1096
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	7 cut(s)	6, 69, 471, 494, 705, 1269, 1636
BsiEI	CGRYCG	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	1307
BsiHKCI	CYCGRG	3 cut(s)	953, 1650, 1895
BsiSI	CCGG	5 cut(s)	287, 418, 432, 521, 1792
BslFI	GGGAC	3 cut(s)	526, 1114, 1593
BslI	CCNNNNNNNGG	9 cut(s)	77, 265, 675, 959, 1095, 1099, 1187, 1360, 1797
BsmAI	GTCTC	2 cut(s)	1030, 1724
BsmFI	GGGAC	3 cut(s)	526, 1114, 1593
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	7 cut(s)	6, 69, 471, 494, 705, 1269, 1636
Bso31I	GGTCTC	1 cut(s)	1724
BsoBI	CYCGRG	3 cut(s)	953, 1650, 1895
Bsp120I	GGGCCC	2 cut(s)	1267, 1634
Bsp1286I	GDGCHC	3 cut(s)	1271, 1307, 1638
Bsp143I	GATC	7 cut(s)	268, 898, 1015, 1364, 1582, 1810, 1857
BspACI	CCGC	5 cut(s)	58, 71, 253, 746, 1755
BspANI	GGCC	7 cut(s)	6, 69, 471, 494, 705, 1269, 1636
BspCNI	CTCAG	6 cut(s)	273, 285, 682, 1258, 1751, 1840
BspFNI	CGCG	1 cut(s)	216
BspHI	TCATGA	2 cut(s)	355, 1147
BspLI	GGNNCC	6 cut(s)	519, 900, 1130, 1269, 1609, 1636
BspMI	ACCTGC	1 cut(s)	1706
BspPI	GGATC	4 cut(s)	276, 893, 906, 1372
BspQI	GCTCTTC	1 cut(s)	1182
BspTI	CTTAAG	1 cut(s)	800
BspTNI	GGTCTC	1 cut(s)	1724
BsrBI	CCGCTC	1 cut(s)	255
BsrDI	GCAATG	6 cut(s)	442, 460, 466, 472, 843, 1338
BsrFI	RCCGGY	2 cut(s)	286, 431
BsrI	ACTGG	2 cut(s)	507, 685
BssAI	RCCGGY	2 cut(s)	286, 431
BssECI	CCNNGG	5 cut(s)	91, 334, 531, 1271, 1630
BssMI	GATC	7 cut(s)	268, 898, 1015, 1364, 1582, 1810, 1857
BssNI	GRCGYC	2 cut(s)	524, 666
BssT1I	CCWWGG	1 cut(s)	1630
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	5 cut(s)	338, 535, 1215, 1471, 1854
Bst6I	CTCTTC	4 cut(s)	199, 849, 1182, 1790
BstACI	GRCGYC	2 cut(s)	524, 666
BstAFI	CTTAAG	1 cut(s)	800
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	7 cut(s)	8, 71, 212, 233, 288, 385, 1173
BstDEI	CTNAG	6 cut(s)	260, 272, 690, 1245, 1738, 1827
BstDSI	CCRYGG	3 cut(s)	334, 531, 1271
BstENI	CCTNNNNNAGG	1 cut(s)	673
BstF5I	GGATG	5 cut(s)	706, 991, 1068, 1281, 1444
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	4 cut(s)	216, 286, 423, 1749
BstKTI	GATC	7 cut(s)	271, 901, 1018, 1367, 1585, 1813, 1860
BstMAI	GTCTC	2 cut(s)	1030, 1724
BstMBI	GATC	7 cut(s)	268, 898, 1015, 1364, 1582, 1810, 1857
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 241, 882
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	570, 1790
BstSLI	GKGCMC	2 cut(s)	1271, 1638
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	46, 995, 1096
BstV2I	GAAGAC	3 cut(s)	68, 354, 1209
BstX2I	RGATCY	2 cut(s)	268, 898
BstYI	RGATCY	2 cut(s)	268, 898
BsuRI	GGCC	7 cut(s)	6, 69, 471, 494, 705, 1269, 1636
BtgI	CCRYGG	3 cut(s)	334, 531, 1271
BtgZI	GCGATG	1 cut(s)	1004
BtrI	CACGTC	1 cut(s)	905
BtsCI	GGATG	5 cut(s)	706, 991, 1068, 1281, 1444
BtsI	GCAGTG	1 cut(s)	1609
BtsIMutI	CAGTG	6 cut(s)	131, 268, 514, 1536, 1569, 1609
BveI	ACCTGC	1 cut(s)	1706
Cac8I	GCNNGC	7 cut(s)	8, 71, 212, 233, 288, 385, 1173
CciI	TCATGA	2 cut(s)	355, 1147
CfoI	GCGC	4 cut(s)	216, 286, 423, 1749
Cfr10I	RCCGGY	2 cut(s)	286, 431
CseI	GACGC	4 cut(s)	106, 359, 513, 674
Csp6I	GTAC	3 cut(s)	715, 927, 1086
CspCI	CAANNNNNGTGG	4 cut(s)	377, 412, 490, 525
CviAII	CATG	8 cut(s)	232, 356, 880, 1148, 1624, 1659, 1676, 1752
CviQI	GTAC	3 cut(s)	715, 927, 1086
DdeI	CTNAG	6 cut(s)	260, 272, 690, 1245, 1738, 1827
DpnI	GATC	7 cut(s)	270, 900, 1017, 1366, 1584, 1812, 1859
DpnII	GATC	7 cut(s)	268, 898, 1015, 1364, 1582, 1810, 1857
EaeI	YGGCCR	2 cut(s)	469, 703
Eam1104I	CTCTTC	4 cut(s)	199, 849, 1182, 1790
EarI	CTCTTC	4 cut(s)	199, 849, 1182, 1790
Eco130I	CCWWGG	1 cut(s)	1630
Eco24I	GRGCYC	2 cut(s)	1271, 1638
Eco31I	GGTCTC	1 cut(s)	1724
Eco47I	GGWCC	4 cut(s)	1128, 1190, 1607, 1627
Eco57I	CTGAAG	4 cut(s)	107, 428, 1545, 1569
Eco88I	CYCGRG	3 cut(s)	953, 1650, 1895
EcoNI	CCTNNNNNAGG	1 cut(s)	673
EcoO109I	RGGNCCY	1 cut(s)	1128
EcoRII	CCWGG	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	1630
EcoT22I	ATGCAT	2 cut(s)	976, 1664
EcoT38I	GRGCYC	2 cut(s)	1271, 1638
ErhI	CCWWGG	1 cut(s)	1630
FaeI	CATG	8 cut(s)	235, 359, 883, 1151, 1627, 1662, 1679, 1755
FalI	AAGNNNNNCTT	2 cut(s)	1898, 1930
FaqI	GGGAC	3 cut(s)	526, 1114, 1593
FatI	CATG	8 cut(s)	231, 355, 879, 1147, 1623, 1658, 1675, 1751
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	2 cut(s)	1582, 1857
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	4 cut(s)	35, 747, 1009, 1110
FokI	GGATG	5 cut(s)	713, 998, 1055, 1288, 1451
FriOI	GRGCYC	2 cut(s)	1271, 1638
Fsp4HI	GCNGC	4 cut(s)	35, 747, 1009, 1110
FspBI	CTAG	3 cut(s)	77, 278, 750
GlaI	GCGC	4 cut(s)	215, 285, 422, 1748
GluI	GCNGC	4 cut(s)	35, 747, 1009, 1110
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	7 cut(s)	6, 69, 471, 494, 705, 1269, 1636
HapII	CCGG	5 cut(s)	287, 418, 432, 521, 1792
HgaI	GACGC	4 cut(s)	106, 359, 513, 674
HhaI	GCGC	4 cut(s)	216, 286, 423, 1749
Hin1I	GRCGYC	2 cut(s)	524, 666
Hin1II	CATG	8 cut(s)	235, 359, 883, 1151, 1627, 1662, 1679, 1755
Hin6I	GCGC	4 cut(s)	214, 284, 421, 1747
HinP1I	GCGC	4 cut(s)	214, 284, 421, 1747
HindIII	AAGCTT	2 cut(s)	917, 1152
HpaII	CCGG	5 cut(s)	287, 418, 432, 521, 1792
HphI	GGTGA	8 cut(s)	124, 421, 550, 586, 942, 1390, 1494, 1847
Hpy166II	GTNNAC	3 cut(s)	44, 531, 1066
Hpy188III	TCNNGA	9 cut(s)	278, 344, 356, 635, 896, 908, 1148, 1691, 1723
Hpy8I	GTNNAC	3 cut(s)	44, 531, 1066
Hpy99I	CGWCG	1 cut(s)	529
HpyAV	CCTTC	7 cut(s)	131, 410, 1219, 1272, 1375, 1705, 1900
HpyCH4III	ACNGT	5 cut(s)	338, 535, 1215, 1471, 1854
HpyCH4IV	ACGT	3 cut(s)	372, 904, 1924
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 241, 882
HpyF3I	CTNAG	6 cut(s)	260, 272, 690, 1245, 1738, 1827
HpySE526I	ACGT	3 cut(s)	372, 904, 1924
Hsp92I	GRCGYC	2 cut(s)	524, 666
Hsp92II	CATG	8 cut(s)	235, 359, 883, 1151, 1627, 1662, 1679, 1755
HspAI	GCGC	4 cut(s)	214, 284, 421, 1747
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	2 cut(s)	1582, 1857
Kzo9I	GATC	7 cut(s)	268, 898, 1015, 1364, 1582, 1810, 1857
LguI	GCTCTTC	1 cut(s)	1182
LmnI	GCTCC	5 cut(s)	260, 300, 420, 523, 557
Lsp1109I	GCAGC	3 cut(s)	46, 995, 1096
LweI	GCATC	4 cut(s)	271, 370, 976, 1669
MaeI	CTAG	3 cut(s)	77, 278, 750
MaeII	ACGT	3 cut(s)	372, 904, 1924
MaeIII	GTNAC	5 cut(s)	188, 368, 731, 1552, 1616
MalI	GATC	7 cut(s)	270, 900, 1017, 1366, 1584, 1812, 1859
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	7 cut(s)	268, 898, 1015, 1364, 1582, 1810, 1857
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	2 cut(s)	268, 898
MhlI	GDGCHC	3 cut(s)	1271, 1307, 1638
MlsI	TGGCCA	2 cut(s)	471, 705
MluCI	AATT	9 cut(s)	11, 17, 154, 652, 737, 1135, 1203, 1592, 1706
MluNI	TGGCCA	2 cut(s)	471, 705
MlyI	GAGTC	7 cut(s)	49, 185, 608, 965, 1379, 1815, 1907
MmeI	TCCRAC	4 cut(s)	222, 471, 820, 1798
Mox20I	TGGCCA	2 cut(s)	471, 705
Mph1103I	ATGCAT	2 cut(s)	976, 1664
MreI	CGCCGGCG	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	2 cut(s)	314, 327
MscI	TGGCCA	2 cut(s)	471, 705
MseI	TTAA	7 cut(s)	660, 801, 981, 1104, 1124, 1284, 1929
MslI	CAYNNNNRTG	2 cut(s)	536, 969
Msp20I	TGGCCA	2 cut(s)	471, 705
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	5 cut(s)	287, 418, 432, 521, 1792
MspR9I	CCNGG	2 cut(s)	572, 1792
MunI	CAATTG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	937
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	102, 241, 882
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	1792
NdeII	GATC	7 cut(s)	268, 898, 1015, 1364, 1582, 1810, 1857
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	8 cut(s)	235, 359, 883, 1151, 1627, 1662, 1679, 1755
NlaIV	GGNNCC	6 cut(s)	519, 900, 1130, 1269, 1609, 1636
NmeAIII	GCCGAG	2 cut(s)	63, 72
NmuCI	GTSAC	2 cut(s)	188, 1616
NsiI	ATGCAT	2 cut(s)	976, 1664
NspI	RCATGY	1 cut(s)	235
OliI	CACNNNNGTG	1 cut(s)	536
PaeI	GCATGC	1 cut(s)	235
PagI	TCATGA	2 cut(s)	355, 1147
PciSI	GCTCTTC	1 cut(s)	1182
PcsI	WCGNNNNNNNCGW	2 cut(s)	337, 521
PctI	GAATGC	1 cut(s)	937
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	2 cut(s)	314, 327
PfeI	GAWTC	3 cut(s)	49, 295, 1865
PflMI	CCANNNNNTGG	1 cut(s)	1360
PfoI	TCCNGGA	1 cut(s)	1790
PkrI	GCNGC	4 cut(s)	36, 748, 1010, 1111
PleI	GAGTC	7 cut(s)	48, 185, 607, 964, 1379, 1815, 1906
PpsI	GAGTC	7 cut(s)	48, 185, 607, 964, 1379, 1815, 1906
PpuMI	RGGWCCY	1 cut(s)	1128
Psp5II	RGGWCCY	1 cut(s)	1128
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	6 cut(s)	519, 900, 1130, 1269, 1609, 1636
PspOMI	GGGCCC	2 cut(s)	1267, 1634
PspPPI	RGGWCCY	1 cut(s)	1128
PsrI	GAACNNNNNNTAC	2 cut(s)	1510, 1542
PsuI	RGATCY	2 cut(s)	268, 898
RsaI	GTAC	3 cut(s)	716, 928, 1087
RsaNI	GTAC	3 cut(s)	715, 927, 1086
RseI	CAYNNNNRTG	2 cut(s)	536, 969
SapI	GCTCTTC	1 cut(s)	1182
SaqAI	TTAA	7 cut(s)	660, 801, 981, 1104, 1124, 1284, 1929
SatI	GCNGC	4 cut(s)	35, 747, 1009, 1110
Sau3AI	GATC	7 cut(s)	268, 898, 1015, 1364, 1582, 1810, 1857
SchI	GAGTC	7 cut(s)	49, 185, 608, 965, 1379, 1815, 1907
ScrFI	CCNGG	2 cut(s)	572, 1792
SduI	GDGCHC	3 cut(s)	1271, 1307, 1638
SfaNI	GCATC	4 cut(s)	271, 370, 976, 1669
SgrAI	CRCCGGYG	1 cut(s)	286
SinI	GGWCC	4 cut(s)	1128, 1190, 1607, 1627
SmiMI	CAYNNNNRTG	2 cut(s)	536, 969
SmlI	CTYRAG	3 cut(s)	800, 1300, 1721
SmoI	CTYRAG	3 cut(s)	800, 1300, 1721
SphI	GCATGC	1 cut(s)	235
Sse9I	AATT	9 cut(s)	11, 17, 154, 652, 737, 1135, 1203, 1592, 1706
SsiI	CCGC	5 cut(s)	58, 71, 253, 746, 1755
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	3 cut(s)	77, 278, 750
StyD4I	CCNGG	2 cut(s)	570, 1790
StyI	CCWWGG	1 cut(s)	1630
TaaI	ACNGT	5 cut(s)	338, 535, 1215, 1471, 1854
TaiI	ACGT	3 cut(s)	375, 907, 1927
TaqI	TCGA	1 cut(s)	872
TasI	AATT	9 cut(s)	11, 17, 154, 652, 737, 1135, 1203, 1592, 1706
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	3 cut(s)	49, 295, 1865
Tru1I	TTAA	7 cut(s)	660, 801, 981, 1104, 1124, 1284, 1929
Tru9I	TTAA	7 cut(s)	660, 801, 981, 1104, 1124, 1284, 1929
TscAI	CASTG	6 cut(s)	131, 268, 514, 1536, 1569, 1609
TseFI	GTSAC	2 cut(s)	188, 1616
TseI	GCWGC	3 cut(s)	34, 1008, 1109
Tsp45I	GTSAC	2 cut(s)	188, 1616
TspDTI	ATGAA	7 cut(s)	868, 1164, 1292, 1612, 1647, 1854, 1906
TspGWI	ACGGA	2 cut(s)	213, 1288
TspRI	CASTG	6 cut(s)	131, 268, 514, 1536, 1569, 1609
Van91I	CCANNNNNTGG	1 cut(s)	1360
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	4 cut(s)	1128, 1190, 1607, 1627
XagI	CCTNNNNNAGG	1 cut(s)	673
XapI	RAATTY	1 cut(s)	1203
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	538, 1139
XmiI	GTMKAC	1 cut(s)	43
XmnI	GAANNNNTTC	2 cut(s)	314, 327
XspI	CTAG	3 cut(s)	77, 278, 750
Zsp2I	ATGCAT	2 cut(s)	976, 1664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.