MD11G1209300.v1.1

Indole-3-acetate O-methyltransferase 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
30561067 .. 30564882
3816 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1209300.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGGCTCCGAAGGGAGACAACGTCGTAGTTTCTAGTATAAAGCTCGAGAAGATATTTAGCATGAAAGGAGGCAAAGGAGAGTCCAGCTATGCCAACAATTCCCAAGCCCAGGCCATACATGCAAGATCTATGCTTCACCTGCTAAAAGAAACCCTAGACAGTGTGCAACTGAGCTCTCCAGAAGTGCCATTTGTGGCTGTGGATCTTGGATGCTCAAGCGGAAGCAACACCATCTACATAATAGATGTGATCATCGAACACATGACCAAGCGCTATGAGGCCTTGGGATGTGACCCTCCTGAGTTCTCTGCATTTTTCTCTGATCTCCCCAGCAATGATTTCAACACGCTGTTCCAGCTCATCCCTCCTATGGCCAACCATGGCGGAAGCATGGAGGAAACGCTTGCCACTGACAACCACCGCTCCTACTTTGCTGCTGCCGTCCCAGGTTCATTTTACCGGCGGCTCTTCCCATCGAGGTCCGTTGACCTTTTTCACTCGGCGTTCTGCTTGCATTGGCTCTCTCAGGTCCCAGAGAGTGTGCTGGACAAGAGATCAGCAGCCTACAACAAAGGAAGGGTGTTTATTCATGGGGCAAATGAGAGCACAGCTATTGCCTACAAGAAGCAGTTCCAGACAGACTTGGCAAGCTTTCTCAGGTCCAGAGCCAAGGAGCTCAAGAAGGGAGGCTCCATGTTTCTTGTTTGCTTGGGTAGGACCACAGTGGACCCCACTGACGAAAGTGGCCCAGGCCTTCTCTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGACTTATCACTAGTGAGAAACGTGACAGTTTCAACATTCCTGTGTATGCATCAAGTTTACAAGACTTCAAGGAAGTAGTGGAAGCCGATGGCTCATTCACCATAAACAAGCTCGAGATTTTTAAAGGAGGAAGTCCCCTTGTTGTGAGCCAACCTGATGATGCCGCTGAAGTCGGTCGAGCCCTTGCCAACAGCTGTAGGAGCGTTGCTGGAGTCCTCGTCGATGCACACATCGGTGACCACCTTGGCAATGAGTTGTTCTCAAGGGTGGAGAAAAGGGGCACAAGCCAAGCCAAAGAGCTACTGGAGAAGTTGCAATTCTTTCACATAGTGGCCTCACTTTCTCTTGCTTAA

Protein Analysis

386

Amino Acids

42.13

Weight (kDa)

5.75

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 62 - 383 1.9e-101 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 147
AccBSI CCGCTC 1 cut(s) 423
AciI CCGC 5 cut(s) 219, 384, 421, 463, 969
AclWI GGATC 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 993
AdeI CACNNNGTG 1 cut(s) 1135
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 3 cut(s) 109, 370, 775
AgsI TTSAA 3 cut(s) 343, 838, 874
AhlI ACTAGT 1 cut(s) 815
AjnI CCWGG 3 cut(s) 108, 445, 748
AleI CACNNNNGTG 1 cut(s) 1038
Alw21I GWGCWC 3 cut(s) 176, 608, 678
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 210
Ama87I CYCGRG 2 cut(s) 44, 917
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 6 cut(s) 111, 279, 372, 745, 751, 1137
ApeKI GCWGC 3 cut(s) 434, 437, 560
Asp700I GAANNNNTTC 1 cut(s) 629
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 7 cut(s) 480, 529, 660, 717, 727, 746, 765
AsuHPI GGTGA 3 cut(s) 128, 895, 1052
AvaI CYCGRG 2 cut(s) 44, 917
AvaII GGWCC 6 cut(s) 480, 529, 660, 717, 727, 765
BaeGI GKGCMC 1 cut(s) 1088
BalI TGGCCA 1 cut(s) 374
BanII GRGCYC 3 cut(s) 176, 678, 988
Bbv12I GWGCWC 3 cut(s) 176, 608, 678
BbvI GCAGC 3 cut(s) 421, 424, 572
BccI CCATC 3 cut(s) 239, 481, 887
BceAI ACGGC 1 cut(s) 425
BciT130I CCWGG 3 cut(s) 110, 447, 750
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 9
BcuI ACTAGT 1 cut(s) 815
BfaI CTAG 3 cut(s) 33, 155, 816
BfmI CTRYAG 1 cut(s) 1000
BfoI RGCGCY 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 147
BglII AGATCT 1 cut(s) 125
BisI GCNGC 5 cut(s) 435, 438, 464, 561, 969
BlsI GCNGC 5 cut(s) 436, 439, 465, 562, 970
Bme1390I CCNGG 3 cut(s) 110, 447, 750
Bme18I GGWCC 6 cut(s) 480, 529, 660, 717, 727, 765
BmeT110I CYCGRG 2 cut(s) 44, 917
BmgT120I GGNCC 7 cut(s) 480, 529, 660, 717, 727, 746, 765
BmiI GGNNCC 6 cut(s) 6, 531, 691, 729, 766, 767
BmrFI CCNGG 3 cut(s) 110, 447, 750
BmsI GCATC 5 cut(s) 200, 769, 863, 955, 1018
BplI GAGNNNNNCTC 2 cut(s) 1049, 1081
BpmI CTGGAG 3 cut(s) 162, 1035, 1130
BpuEI CTTGAG 3 cut(s) 199, 662, 1051
BsaJI CCNNGG 7 cut(s) 108, 282, 379, 445, 669, 748, 1048
BsaXI ACNNNNNCTCC 6 cut(s) 6, 36, 407, 437, 1008, 1038
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 370, 775
Bse118I RCCGGY 1 cut(s) 459
Bse1I ACTGG 1 cut(s) 1113
Bse3DI GCAATG 2 cut(s) 340, 1060
BseBI CCWGG 3 cut(s) 110, 447, 750
BseDI CCNNGG 7 cut(s) 108, 282, 379, 445, 669, 748, 1048
BseGI GGATG 5 cut(s) 215, 293, 360, 784, 793
BseLI CCNNNNNNNGG 3 cut(s) 109, 370, 775
BseMI GCAATG 2 cut(s) 340, 1060
BseMII CTCAG 4 cut(s) 161, 291, 539, 670
BseNI ACTGG 1 cut(s) 1113
BseSI GKGCMC 1 cut(s) 1088
BseXI GCAGC 3 cut(s) 421, 424, 572
BseYI CCCAGC 1 cut(s) 329
Bsh1285I CGRYCG 1 cut(s) 982
BshFI GGCC 6 cut(s) 113, 281, 374, 747, 753, 1139
BsiEI CGRYCG 1 cut(s) 982
BsiHKAI GWGCWC 3 cut(s) 176, 608, 678
BsiHKCI CYCGRG 2 cut(s) 44, 917
BsiSI CCGG 1 cut(s) 460
BslFI GGGAC 5 cut(s) 428, 515, 778, 819, 924
BslI CCNNNNNNNGG 3 cut(s) 109, 370, 775
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 5 cut(s) 428, 515, 778, 819, 924
BsnI GGCC 6 cut(s) 113, 281, 374, 747, 753, 1139
BsoBI CYCGRG 2 cut(s) 44, 917
Bsp1286I GDGCHC 5 cut(s) 176, 608, 678, 988, 1088
Bsp143I GATC 6 cut(s) 125, 202, 249, 322, 554, 790
Bsp19I CCATGG 1 cut(s) 379
BspACI CCGC 5 cut(s) 219, 384, 421, 463, 969
BspANI GGCC 6 cut(s) 113, 281, 374, 747, 753, 1139
BspCNI CTCAG 4 cut(s) 162, 292, 538, 669
BspLI GGNNCC 6 cut(s) 6, 531, 691, 729, 766, 767
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 1 cut(s) 210
BspQI GCTCTTC 1 cut(s) 473
BsrBI CCGCTC 1 cut(s) 423
BsrDI GCAATG 2 cut(s) 340, 1060
BsrFI RCCGGY 1 cut(s) 459
BsrI ACTGG 1 cut(s) 1113
BssAI RCCGGY 1 cut(s) 459
BssECI CCNNGG 7 cut(s) 108, 282, 379, 445, 669, 748, 1048
BssMI GATC 6 cut(s) 125, 202, 249, 322, 554, 790
BssT1I CCWWGG 4 cut(s) 282, 379, 669, 1048
Bst2UI CCWGG 3 cut(s) 110, 447, 750
Bst4CI ACNGT 3 cut(s) 161, 724, 833
Bst6I CTCTTC 1 cut(s) 473
BstC8I GCNNGC 3 cut(s) 405, 512, 649
BstDEI CTNAG 4 cut(s) 170, 300, 525, 656
BstDSI CCRYGG 1 cut(s) 379
BstEII GGTNACC 1 cut(s) 1040
BstF5I GGATG 5 cut(s) 215, 293, 360, 784, 793
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 6 cut(s) 128, 205, 252, 325, 557, 793
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 6 cut(s) 125, 202, 249, 322, 554, 790
BstMCI CGRYCG 1 cut(s) 982
BstMWI GCNNNNNNNGC 4 cut(s) 119, 139, 355, 1005
BstNI CCWGG 3 cut(s) 110, 447, 750
BstNSI RCATGY 1 cut(s) 122
BstPI GGTNACC 1 cut(s) 1040
BstSCI CCNGG 3 cut(s) 108, 445, 748
BstSFI CTRYAG 1 cut(s) 1000
BstSLI GKGCMC 1 cut(s) 1088
BstV1I GCAGC 3 cut(s) 421, 424, 572
BstX2I RGATCY 2 cut(s) 125, 202
BstYI RGATCY 2 cut(s) 125, 202
BsuRI GGCC 6 cut(s) 113, 281, 374, 747, 753, 1139
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 5 cut(s) 215, 293, 360, 784, 793
BtsIMutI CAGTG 4 cut(s) 166, 408, 729, 732
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 3 cut(s) 405, 512, 649
CfoI GCGC 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 459
Cfr13I GGNCC 7 cut(s) 480, 529, 660, 717, 727, 746, 765
CviAII CATG 7 cut(s) 61, 119, 262, 380, 391, 590, 694
DdeI CTNAG 4 cut(s) 170, 300, 525, 656
DpnI GATC 6 cut(s) 127, 204, 251, 324, 556, 792
DpnII GATC 6 cut(s) 125, 202, 249, 322, 554, 790
DraI TTTAAA 1 cut(s) 928
DraIII CACNNNGTG 1 cut(s) 1135
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 473
EarI CTCTTC 1 cut(s) 473
EciI GGCGGA 1 cut(s) 399
Ecl136II GAGCTC 2 cut(s) 174, 676
Eco130I CCWWGG 4 cut(s) 282, 379, 669, 1048
Eco147I AGGCCT 2 cut(s) 281, 753
Eco24I GRGCYC 3 cut(s) 176, 678, 988
Eco47I GGWCC 6 cut(s) 480, 529, 660, 717, 727, 765
Eco47III AGCGCT 1 cut(s) 272
Eco53kI GAGCTC 2 cut(s) 174, 676
Eco57I CTGAAG 1 cut(s) 993
Eco88I CYCGRG 2 cut(s) 44, 917
Eco91I GGTNACC 1 cut(s) 1040
EcoICRI GAGCTC 2 cut(s) 174, 676
EcoO109I RGGNCCY 2 cut(s) 529, 765
EcoO65I GGTNACC 1 cut(s) 1040
EcoRII CCWGG 3 cut(s) 108, 445, 748
EcoT14I CCWWGG 4 cut(s) 282, 379, 669, 1048
EcoT22I ATGCAT 1 cut(s) 856
EcoT38I GRGCYC 3 cut(s) 176, 678, 988
ErhI CCWWGG 4 cut(s) 282, 379, 669, 1048
FaeI CATG 7 cut(s) 64, 122, 265, 383, 394, 593, 697
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FaqI GGGAC 5 cut(s) 428, 515, 778, 819, 924
FatI CATG 7 cut(s) 60, 118, 261, 379, 390, 589, 693
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 5 cut(s) 435, 438, 464, 561, 969
FokI GGATG 5 cut(s) 222, 300, 347, 791, 800
FriOI GRGCYC 3 cut(s) 176, 678, 988
Fsp4HI GCNGC 5 cut(s) 435, 438, 464, 561, 969
FspBI CTAG 3 cut(s) 33, 155, 816
GlaI GCGC 1 cut(s) 272
GluI GCNGC 5 cut(s) 435, 438, 464, 561, 969
GsaI CCCAGC 1 cut(s) 333
GsuI CTGGAG 3 cut(s) 162, 1035, 1130
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 6 cut(s) 113, 281, 374, 747, 753, 1139
HapII CCGG 1 cut(s) 460
HhaI GCGC 1 cut(s) 273
Hin1II CATG 7 cut(s) 64, 122, 265, 383, 394, 593, 697
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 649
HinfI GANTC 2 cut(s) 80, 1017
HpaII CCGG 1 cut(s) 460
HphI GGTGA 3 cut(s) 128, 895, 1052
Hpy166II GTNNAC 3 cut(s) 487, 727, 863
Hpy188I TCNGA 2 cut(s) 9, 322
Hpy188III TCNNGA 8 cut(s) 46, 179, 299, 634, 663, 679, 776, 919
Hpy8I GTNNAC 3 cut(s) 487, 727, 863
Hpy99I CGWCG 2 cut(s) 26, 1028
HpyAV CCTTC 4 cut(s) 4, 570, 676, 764
HpyCH4III ACNGT 3 cut(s) 161, 724, 833
HpyCH4IV ACGT 2 cut(s) 21, 826
HpyCH4V TGCA 7 cut(s) 122, 166, 311, 514, 854, 1031, 1120
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 139, 355, 1005
HpyF3I CTNAG 4 cut(s) 170, 300, 525, 656
HpySE526I ACGT 2 cut(s) 21, 826
Hsp92II CATG 7 cut(s) 64, 122, 265, 383, 394, 593, 697
HspAI GCGC 1 cut(s) 271
KflI GGGWCCC 1 cut(s) 765
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 6 cut(s) 125, 202, 249, 322, 554, 790
LguI GCTCTTC 1 cut(s) 473
LmnI GCTCC 5 cut(s) 10, 428, 673, 695, 1005
Lsp1109I GCAGC 3 cut(s) 421, 424, 572
LweI GCATC 5 cut(s) 200, 769, 863, 955, 1018
MaeI CTAG 3 cut(s) 33, 155, 816
MaeII ACGT 2 cut(s) 21, 826
MaeIII GTNAC 3 cut(s) 290, 827, 1040
MalI GATC 6 cut(s) 127, 204, 251, 324, 556, 792
MbiI CCGCTC 1 cut(s) 423
MboI GATC 6 cut(s) 125, 202, 249, 322, 554, 790
MboII GAAGA 2 cut(s) 61, 460
MflI RGATCY 2 cut(s) 125, 202
MhlI GDGCHC 5 cut(s) 176, 608, 678, 988, 1088
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 2 cut(s) 97, 1121
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 2 cut(s) 89, 1026
Mox20I TGGCCA 1 cut(s) 374
Mph1103I ATGCAT 1 cut(s) 856
MroXI GAANNNNTTC 1 cut(s) 629
MscI TGGCCA 1 cut(s) 374
MseI TTAA 2 cut(s) 927, 1156
MslI CAYNNNNRTG 2 cut(s) 845, 1038
Msp20I TGGCCA 1 cut(s) 374
MspA1I CMGCKG 2 cut(s) 971, 999
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 3 cut(s) 110, 447, 750
MvaI CCWGG 3 cut(s) 110, 447, 750
MwoI GCNNNNNNNGC 4 cut(s) 119, 139, 355, 1005
NcoI CCATGG 1 cut(s) 379
NdeII GATC 6 cut(s) 125, 202, 249, 322, 554, 790
NlaIII CATG 7 cut(s) 64, 122, 265, 383, 394, 593, 697
NlaIV GGNNCC 6 cut(s) 6, 531, 691, 729, 766, 767
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 3 cut(s) 290, 827, 1040
NsiI ATGCAT 1 cut(s) 856
NspI RCATGY 1 cut(s) 122
OliI CACNNNNGTG 1 cut(s) 1038
PaeR7I CTCGAG 2 cut(s) 44, 917
PaqCI CACCTGC 1 cut(s) 147
PceI AGGCCT 2 cut(s) 281, 753
PciSI GCTCTTC 1 cut(s) 473
PdmI GAANNNNTTC 1 cut(s) 629
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 5 cut(s) 436, 439, 465, 562, 970
PleI GAGTC 2 cut(s) 88, 1025
PpsI GAGTC 2 cut(s) 88, 1025
PpuMI RGGWCCY 2 cut(s) 529, 765
Psp124BI GAGCTC 2 cut(s) 176, 678
Psp5II RGGWCCY 2 cut(s) 529, 765
Psp6I CCWGG 3 cut(s) 108, 445, 748
PspEI GGTNACC 1 cut(s) 1040
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 3 cut(s) 108, 445, 748
PspN4I GGNNCC 6 cut(s) 6, 531, 691, 729, 766, 767
PspPI GGNCC 7 cut(s) 480, 529, 660, 717, 727, 746, 765
PspPPI RGGWCCY 2 cut(s) 529, 765
PsuI RGATCY 2 cut(s) 125, 202
PsyI GACNNNGTC 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 999
RseI CAYNNNNRTG 2 cut(s) 845, 1038
SacI GAGCTC 2 cut(s) 176, 678
SapI GCTCTTC 1 cut(s) 473
SaqAI TTAA 2 cut(s) 927, 1156
SatI GCNGC 5 cut(s) 435, 438, 464, 561, 969
Sau3AI GATC 6 cut(s) 125, 202, 249, 322, 554, 790
Sau96I GGNCC 7 cut(s) 480, 529, 660, 717, 727, 746, 765
SchI GAGTC 2 cut(s) 89, 1026
ScrFI CCNGG 3 cut(s) 110, 447, 750
SduI GDGCHC 5 cut(s) 176, 608, 678, 988, 1088
SfaNI GCATC 5 cut(s) 200, 769, 863, 955, 1018
SfcI CTRYAG 1 cut(s) 1000
Sfr274I CTCGAG 2 cut(s) 44, 917
SinI GGWCC 6 cut(s) 480, 529, 660, 717, 727, 765
SlaI CTCGAG 2 cut(s) 44, 917
SmiMI CAYNNNNRTG 2 cut(s) 845, 1038
SmlI CTYRAG 5 cut(s) 44, 214, 677, 917, 1066
SmoI CTYRAG 5 cut(s) 44, 214, 677, 917, 1066
SpeI ACTAGT 1 cut(s) 815
Sse9I AATT 2 cut(s) 97, 1121
SseBI AGGCCT 2 cut(s) 281, 753
SsiI CCGC 5 cut(s) 219, 384, 421, 463, 969
SspMI CTAG 3 cut(s) 33, 155, 816
SstI GAGCTC 2 cut(s) 176, 678
StuI AGGCCT 2 cut(s) 281, 753
StyD4I CCNGG 3 cut(s) 108, 445, 748
StyI CCWWGG 4 cut(s) 282, 379, 669, 1048
TaaI ACNGT 3 cut(s) 161, 724, 833
TaiI ACGT 2 cut(s) 24, 829
TaqI TCGA 6 cut(s) 45, 255, 476, 918, 982, 1026
TaqII GACCGA 1 cut(s) 968
TasI AATT 2 cut(s) 97, 1121
TauI GCSGC 2 cut(s) 466, 971
Tru1I TTAA 2 cut(s) 927, 1156
Tru9I TTAA 2 cut(s) 927, 1156
TscAI CASTG 4 cut(s) 166, 415, 729, 739
TseFI GTSAC 3 cut(s) 290, 827, 1040
TseI GCWGC 3 cut(s) 434, 437, 560
Tsp45I GTSAC 3 cut(s) 290, 827, 1040
TspDTI ATGAA 3 cut(s) 77, 441, 578
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 4 cut(s) 166, 415, 729, 739
Tth111I GACNNNGTC 1 cut(s) 20
VpaK11BI GGWCC 6 cut(s) 480, 529, 660, 717, 727, 765
XceI RCATGY 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 1105
XhoI CTCGAG 2 cut(s) 44, 917
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 3 cut(s) 33, 155, 816
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.