Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007984

Physical Location & Seq

Genomic Coordinates Forward (+)

31013856 .. 31026106

Gene Structure 12251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1224500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCCAAGGCCAAGAACAAGGACGCGCGCACCGGCGCCACCGTCCACCGCCTCAAGATGTACAACACCAGGCCCAAAGCGTAACAGCAAGGGAAAGGTCTTGAGGAACGAGTTCCAGTCCAAGGAGCTTCCTAACACTCGTATCCAGCCTGATTGCCGCTGGTTCGAGAATAATAGGGTTTCGACTCAGCAGGAGCTTGACATTTTCCGCGAGGAGCACAGTAGGACGGTTTCAAGTAACTACAATGTTATTTTAAGGGGGAAGCATTTGCCATTGTCCCTCTTGAATGACCATCAGAAGCAAACCAGAGTTCATCTTCTAGAGAGAGAGACATTTTCTGATGTATTTCGACATAAGACAAAGAGGAAACGCCCAAAGCTCCTTGCAGCAGATTATGAGTCTTTAGCCAAGAAGGCTGATGGTTCTCAGGTTTTGAGACAATTCGCCCGTTTGAAAAGTGACAAGCAAGCCATTTCTGTGGAATTTGTTGGGTATCCCAACGTTGGAAAGTCATCTGTTTGTAAAGTTGCTCCTATCCCAGGGGAGACTAAAGTGTGGCAGTATATAACACTCACCAAGAGGATTTTCTTGATTGATTGCCCTGGAGTTGTCTATCAAAGCTGTGACTCTGAAACAGATATCATACTGAAGAGCGTGGTACGTGTCACAAATTTGCAGGATGCTACAGAACGCATAGGAGAAATAGAGAACTGGGAAGATGATAATGACTTTTTATGTCAGCTATGCAAATTGTCAGGCAAACTTTTGAAGGGTGGTGAACCCGACTTGATGACTGCAGCAAAGATGGTCCCCCATGACTGGCAGAGGGGTAAAATACCATTTTTTGTGCCGCCACCAAAAAGAGAATCACCAAGGGGGGAGGCTGATATTGATCACAATAAAGATGACAGTGTGGAAGATAACAATCAGGCTGCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042254 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NGP1NT

Protein Analysis

314

Amino Acids

35.67

Weight (kDa)

9.31

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NGP1NT	PF08153	25 - 142	3.1e-37	NGP1NT (NUC091) domain
MMR_HSR1	PF01926	160 - 208	1.4e-07	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52980
fragaria_vesca	FvH4_5g29580 FvH4_5g29580
malus_domestica	MD00G1089700.v1.1 MD03G1224500.v1.1 MD10G1052400.v1.1
prunus_persica	Prupe.4G184700_v2.0.a1
pyrus_communis	pycom10g03710 pycom11g21460
rosa_chinensis	RchiOBHm_Chr7g0222551
rosa_laevigata	RLG00000002045
rosa_multiflora	Rmu_sc0000312.1_g000002 Rmu_sc0011862.1_g000002 Rmu_ssc0000146.1_g000030
rosa_roxburghii	Rroxscaffold_3G00236670 Rroxscaffold_5G00375010
rosa_rugosa	Rorug07G0210800
rosa_samantha	Rh7AG353900 Rh7BG342700 Rh7CG371400 Rh7DG349200
rosa_wichuraiana	Rw0G020100 Rw7G029770 Rw7G030080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccII	CGCG	3 cut(s)	25, 27, 210
AciI	CCGC	4 cut(s)	48, 157, 208, 851
AclI	AACGTT	1 cut(s)	501
AcsI	RAATTY	2 cut(s)	482, 670
AcuI	CTGAAG	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	61, 660
AfiI	CCNNNNNNNGG	4 cut(s)	121, 503, 539, 819
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	4 cut(s)	234, 286, 454, 769
AjnI	CCWGG	3 cut(s)	67, 538, 601
AjuI	GAANNNNNNNTTGG	2 cut(s)	569, 601
AluBI	AGCT	5 cut(s)	127, 196, 379, 621, 742
AluI	AGCT	5 cut(s)	127, 196, 379, 621, 742
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	323, 430, 539
AoxI	GGCC	2 cut(s)	8, 70
ApeKI	GCWGC	4 cut(s)	386, 797, 932, 935
ApoI	RAATTY	2 cut(s)	482, 670
Asp700I	GAANNNNTTC	1 cut(s)	110
AspLEI	GCGC	3 cut(s)	27, 29, 37
AspS9I	GGNCC	2 cut(s)	71, 808
AsuHPI	GGTGA	3 cut(s)	565, 788, 861
AvaII	GGWCC	1 cut(s)	808
BaeI	ACNNNNGTAYC	2 cut(s)	124, 157
BanI	GGYRCC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	398, 809, 919
BccI	CCATC	3 cut(s)	300, 413, 799
BciT130I	CCWGG	3 cut(s)	69, 540, 603
BciVI	GTATCC	2 cut(s)	152, 504
BclI	TGATCA	1 cut(s)	892
BcoDI	GTCTC	3 cut(s)	323, 430, 539
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	3 cut(s)	684, 795, 933
BfoI	RGCGCY	1 cut(s)	38
BfuI	GTATCC	2 cut(s)	152, 504
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	6 cut(s)	157, 387, 798, 851, 933, 936
BlsI	GCNGC	6 cut(s)	158, 388, 799, 852, 934, 937
Bme1390I	CCNGG	3 cut(s)	69, 540, 603
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	71, 808
BmiI	GGNNCC	2 cut(s)	36, 810
BmrFI	CCNGG	3 cut(s)	69, 540, 603
BmrI	ACTGGG	1 cut(s)	721
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	1 cut(s)	721
BpmI	CTGGAG	1 cut(s)	624
BpuEI	CTTGAG	2 cut(s)	37, 121
BsaAI	YACGTR	1 cut(s)	662
BsaBI	GATNNNNATC	2 cut(s)	891, 924
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	6 cut(s)	5, 120, 538, 539, 601, 872
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 503, 539, 819
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	115, 716, 824
Bse8I	GATNNNNATC	2 cut(s)	891, 924
BseBI	CCWGG	3 cut(s)	69, 540, 603
BseDI	CCNNGG	6 cut(s)	5, 120, 538, 539, 601, 872
BseGI	GGATG	1 cut(s)	685
BseJI	GATNNNNATC	2 cut(s)	891, 924
BseLI	CCNNNNNNNGG	4 cut(s)	121, 503, 539, 819
BseMII	CTCAG	2 cut(s)	200, 440
BseNI	ACTGG	3 cut(s)	115, 716, 824
BsePI	GCGCGC	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	3 cut(s)	398, 809, 919
Bsh1236I	CGCG	3 cut(s)	25, 27, 210
BshFI	GGCC	2 cut(s)	10, 72
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	2 cut(s)	262, 794
BslI	CCNNNNNNNGG	4 cut(s)	121, 503, 539, 819
BsmAI	GTCTC	3 cut(s)	323, 430, 539
BsmFI	GGGAC	2 cut(s)	262, 794
BsnI	GGCC	2 cut(s)	10, 72
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	892
BspACI	CCGC	4 cut(s)	48, 157, 208, 851
BspANI	GGCC	2 cut(s)	10, 72
BspCNI	CTCAG	2 cut(s)	199, 439
BspFNI	CGCG	3 cut(s)	25, 27, 210
BspLI	GGNNCC	2 cut(s)	36, 810
BspMAI	CTGCAG	2 cut(s)	799, 937
BspQI	GCTCTTC	1 cut(s)	644
BspT107I	GGYRCC	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	115, 716, 824
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	6 cut(s)	5, 120, 538, 539, 601, 872
BssHII	GCGCGC	1 cut(s)	25
BssMI	GATC	1 cut(s)	892
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	3 cut(s)	5, 120, 872
Bst2UI	CCWGG	3 cut(s)	69, 540, 603
Bst4CI	ACNGT	4 cut(s)	42, 221, 229, 911
Bst6I	CTCTTC	1 cut(s)	644
BstACI	GRCGYC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	27, 468
BstDEI	CTNAG	2 cut(s)	186, 426
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstF5I	GGATG	1 cut(s)	685
BstFNI	CGCG	3 cut(s)	25, 27, 210
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	3 cut(s)	27, 29, 37
BstKTI	GATC	1 cut(s)	895
BstMAI	GTCTC	3 cut(s)	323, 430, 539
BstMBI	GATC	1 cut(s)	892
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	3 cut(s)	69, 540, 603
BstSCI	CCNGG	3 cut(s)	67, 538, 601
BstSFI	CTRYAG	3 cut(s)	684, 795, 933
BstUI	CGCG	3 cut(s)	25, 27, 210
BstV1I	GCAGC	3 cut(s)	398, 809, 919
BstXI	CCANNNNNNTGG	1 cut(s)	478
BsuI	GTATCC	2 cut(s)	152, 504
BsuRI	GGCC	2 cut(s)	10, 72
BtsCI	GGATG	1 cut(s)	685
BtsIMutI	CAGTG	1 cut(s)	916
Cac8I	GCNNGC	2 cut(s)	27, 468
CfoI	GCGC	3 cut(s)	27, 29, 37
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	71, 808
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	60, 659
CviAII	CATG	1 cut(s)	815
CviQI	GTAC	2 cut(s)	60, 659
DdeI	CTNAG	2 cut(s)	186, 426
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	1 cut(s)	894
DpnII	GATC	1 cut(s)	892
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
Eco130I	CCWWGG	3 cut(s)	5, 120, 872
Eco32I	GATATC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	668
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoRII	CCWGG	3 cut(s)	67, 538, 601
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	3 cut(s)	5, 120, 872
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	3 cut(s)	5, 120, 872
FaeI	CATG	1 cut(s)	818
FaqI	GGGAC	2 cut(s)	262, 794
FatI	CATG	1 cut(s)	814
FbaI	TGATCA	1 cut(s)	892
Fnu4HI	GCNGC	6 cut(s)	157, 387, 798, 851, 933, 936
FokI	GGATG	1 cut(s)	692
Fsp4HI	GCNGC	6 cut(s)	157, 387, 798, 851, 933, 936
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	3 cut(s)	26, 28, 36
GluI	GCNGC	6 cut(s)	157, 387, 798, 851, 933, 936
GsuI	CTGGAG	1 cut(s)	624
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	10, 72
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	3 cut(s)	27, 29, 37
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	818
Hin6I	GCGC	3 cut(s)	25, 27, 35
HinP1I	GCGC	3 cut(s)	25, 27, 35
HinfI	GANTC	4 cut(s)	184, 398, 626, 866
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	3 cut(s)	565, 788, 861
Hpy166II	GTNNAC	2 cut(s)	45, 779
Hpy188I	TCNGA	3 cut(s)	297, 340, 631
Hpy188III	TCNNGA	6 cut(s)	54, 100, 166, 283, 320, 589
Hpy8I	GTNNAC	2 cut(s)	45, 779
HpyAV	CCTTC	2 cut(s)	406, 763
HpyCH4III	ACNGT	4 cut(s)	42, 221, 229, 911
HpyCH4IV	ACGT	2 cut(s)	501, 661
HpyCH4V	TGCA	5 cut(s)	386, 676, 747, 797, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	2 cut(s)	186, 426
HpySE526I	ACGT	2 cut(s)	501, 661
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	818
HspAI	GCGC	3 cut(s)	25, 27, 35
KasI	GGCGCC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	892
Kzo9I	GATC	1 cut(s)	892
LguI	GCTCTTC	1 cut(s)	644
LmnI	GCTCC	5 cut(s)	124, 193, 214, 384, 535
Lsp1109I	GCAGC	3 cut(s)	398, 809, 919
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	2 cut(s)	501, 661
MaeIII	GTNAC	5 cut(s)	80, 236, 458, 623, 664
MalI	GATC	1 cut(s)	894
MboI	GATC	1 cut(s)	892
MboII	GAAGA	4 cut(s)	308, 661, 728, 929
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	4 cut(s)	440, 482, 670, 749
Mly113I	GGCGCC	1 cut(s)	35
MlyI	GAGTC	3 cut(s)	178, 407, 620
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	8 cut(s)	61, 96, 205, 290, 357, 573, 819, 874
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	3 cut(s)	69, 540, 603
MvaI	CCWGG	3 cut(s)	69, 540, 603
MvnI	CGCG	3 cut(s)	25, 27, 210
MwoI	GCNNNNNNNGC	1 cut(s)	413
NarI	GGCGCC	1 cut(s)	35
NdeII	GATC	1 cut(s)	892
NlaIII	CATG	1 cut(s)	818
NlaIV	GGNNCC	2 cut(s)	36, 810
NmuCI	GTSAC	3 cut(s)	458, 623, 664
PasI	CCCWGGG	1 cut(s)	539
PauI	GCGCGC	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	866
PkrI	GCNGC	6 cut(s)	158, 388, 799, 852, 934, 937
PleI	GAGTC	3 cut(s)	178, 406, 620
PluTI	GGCGCC	1 cut(s)	38
PpsI	GAGTC	3 cut(s)	178, 406, 620
Ppu21I	YACGTR	1 cut(s)	662
Psp1406I	AACGTT	1 cut(s)	501
Psp6I	CCWGG	3 cut(s)	67, 538, 601
PspGI	CCWGG	3 cut(s)	67, 538, 601
PspN4I	GGNNCC	2 cut(s)	36, 810
PspPI	GGNCC	2 cut(s)	71, 808
PstI	CTGCAG	2 cut(s)	799, 937
PteI	GCGCGC	1 cut(s)	25
RsaI	GTAC	2 cut(s)	61, 660
RsaNI	GTAC	2 cut(s)	60, 659
RseI	CAYNNNNRTG	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	6 cut(s)	157, 387, 798, 851, 933, 936
Sau3AI	GATC	1 cut(s)	892
Sau96I	GGNCC	2 cut(s)	71, 808
SchI	GAGTC	3 cut(s)	178, 407, 620
ScrFI	CCNGG	3 cut(s)	69, 540, 603
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	9 cut(s)	99, 129, 198, 381, 432, 504, 623, 664, 744
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	3 cut(s)	684, 795, 933
SfoI	GGCGCC	1 cut(s)	36
SgrAI	CRCCGGYG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	808
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	2 cut(s)	52, 100
SmoI	CTYRAG	2 cut(s)	52, 100
Sse9I	AATT	4 cut(s)	440, 482, 670, 749
SsiI	CCGC	4 cut(s)	48, 157, 208, 851
SspDI	GGCGCC	1 cut(s)	34
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	3 cut(s)	67, 538, 601
StyI	CCWWGG	3 cut(s)	5, 120, 872
TaaI	ACNGT	4 cut(s)	42, 221, 229, 911
TaiI	ACGT	2 cut(s)	504, 664
TaqI	TCGA	3 cut(s)	165, 182, 349
TasI	AATT	4 cut(s)	440, 482, 670, 749
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	2 cut(s)	159, 853
TfiI	GAWTC	1 cut(s)	866
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	916
TseFI	GTSAC	3 cut(s)	458, 623, 664
TseI	GCWGC	4 cut(s)	386, 797, 932, 935
Tsp45I	GTSAC	3 cut(s)	458, 623, 664
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	916
VpaK11BI	GGWCC	1 cut(s)	808
XagI	CCTNNNNNAGG	1 cut(s)	537
XapI	RAATTY	2 cut(s)	482, 670
XbaI	TCTAGA	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.