Rmu_sc0000312.1_g000002

GTPase involved in pre-60S ribosomal subunit maturation

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000312.1
Physical Location & Seq
Forward (+)
4663 .. 8776
4114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000312.1_g000002.1.cds

Sequence Viewer

Length: 1413 bp
atgttgattcacctaagtggtgaacctgacaaagctggaacagcaacagcacgtgaccgcaagggcaagttcatcagcaacgaattccagtccaaggagtttcccaacactcgaatccaacccgatcaccgctggttcgggaatactagggttgtgggccagaaggagcttgaagtctttcgtaacgagctcgagaatcacatgtctaatagatacaatgtgattttgaaggagaagaaattgcccatgtctcttcttaatgaccataagaaggtgtgtactaaattcacaatcaaagagttcatctgcttgagagagttagagagagagccgttttccgatgcatttggacctaagacaaagaggaagcgtccaaaactcttggcagctaattacgagtccctagctaagaaagccgatggttctcaggaagcaggcgaagcggatggatttagggacttgtttcgccatacaatgtttgagaagggacagagtaaacgcatttggggcgagctctacaaagtggtagactcctcagatgttgttgtccagtgtgatttggttcccgcttgggcaacaaaaggttggctaaaagtattgtcggcggagtttccaactcttgcatttcatgctagcatcaacaagtcatctggcaagggttctcttctatctgtgttgaggcaattttccagattaaaaagtgacaagcaagcaatttctgtgggatttgttcggtttcccaatgttggaaagtcatctgttatcaacacactgcgaacgaaaaatgtttgcaaggttgctcctattccaggggaaactaaagtgtggcaatatgtaacactcacaaagaggatcttcttgattgactgccccggagttgtctatcaaaccaacgactctgaaacagatattgtactgaagggcgtggtacgtgtcacaaacttgcaggatgcttcagaacacataggagaagtactgaaacgagttaagaaagagcacttgcgaagagcatataagataaaagactgggaggatgataatgactttctagttcagctatgcaaatcatccggaaagcttttgaagggtggggaacctgacctgatgacagcggcaaagatgatcctccatgattggcagaggggtaagataccattttttgtgcctccaccacaaagagaattgccatcaggggagcatcctgccaatgaagtagaaaacgatacactaatagataataatcaagcatcagcatttagagccattgcaaatgttatttcatcccagcagcaaatgagtgtcccgggttctaagacggctgaggctgaacatgatgttgaggctgagacatctgagaagtctgaggacttggaggatgaggtgtctgacgcagaagatgagacgtccgagtag

Protein Analysis

470

Amino Acids

53.09

Weight (kDa)

8.05

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1406
AccI GTMKAC 1 cut(s) 528
AccIII TCCGGA 1 cut(s) 1070
AciI CCGC 6 cut(s) 58, 130, 443, 567, 605, 1112
AclWI GGATC 2 cut(s) 860, 1117
AcsI RAATTY 2 cut(s) 83, 284
AcuI CTGAAG 2 cut(s) 938, 939
AcvI CACGTG 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 1403
AfaI GTAC 4 cut(s) 280, 915, 930, 975
AfiI CCNNNNNNNGG 4 cut(s) 94, 271, 746, 809
AflIII ACRYGT 2 cut(s) 201, 931
AgsI TTSAA 3 cut(s) 173, 229, 1084
AjnI CCWGG 1 cut(s) 808
AleI CACNNNNGTG 1 cut(s) 15
AluBI AGCT 8 cut(s) 35, 169, 190, 389, 407, 514, 1057, 1078
AluI AGCT 8 cut(s) 35, 169, 190, 389, 407, 514, 1057, 1078
Alw21I GWGCWC 3 cut(s) 192, 516, 999
Alw26I GTCTC 3 cut(s) 255, 1340, 1394
AlwI GGATC 2 cut(s) 860, 1117
Ama87I CYCGRG 2 cut(s) 191, 1303
Aor13HI TCCGGA 1 cut(s) 1070
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 386, 1288
ApoI RAATTY 2 cut(s) 83, 284
Asp700I GAANNNNTTC 1 cut(s) 177
AspS9I GGNCC 2 cut(s) 157, 350
AsuC2I CCSGG 3 cut(s) 873, 1304, 1305
AsuHPI GGTGA 2 cut(s) 32, 119
AsuNHI GCTAGC 1 cut(s) 632
AvaI CYCGRG 2 cut(s) 191, 1303
AvaII GGWCC 1 cut(s) 350
BanII GRGCYC 2 cut(s) 192, 516
BbrPI CACGTG 1 cut(s) 53
Bbv12I GWGCWC 3 cut(s) 192, 516, 999
BbvCI CCTCAGC 1 cut(s) 1320
BbvI GCAGC 2 cut(s) 398, 1300
BccI CCATC 3 cut(s) 413, 440, 1195
BceAI ACGGC 2 cut(s) 316, 1332
BciT130I CCWGG 1 cut(s) 810
BcnI CCSGG 3 cut(s) 873, 1304, 1305
BcoDI GTCTC 3 cut(s) 255, 1340, 1394
BfaI CTAG 4 cut(s) 147, 404, 633, 1049
BisI GCNGC 3 cut(s) 387, 1113, 1289
BlsI GCNGC 3 cut(s) 388, 1114, 1290
BmcAI AGTACT 1 cut(s) 975
Bme1390I CCNGG 4 cut(s) 810, 873, 1304, 1305
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 2 cut(s) 191, 1303
BmgT120I GGNCC 2 cut(s) 157, 350
BmiI GGNNCC 2 cut(s) 564, 1095
BmrFI CCNGG 4 cut(s) 810, 873, 1304, 1305
BmrI ACTGGG 1 cut(s) 1036
BmsI GCATC 5 cut(s) 331, 645, 940, 1207, 1256
BmtI GCTAGC 1 cut(s) 636
BmuI ACTGGG 1 cut(s) 1036
Bpu10I CCTNAGC 1 cut(s) 1320
BpuEI CTTGAG 1 cut(s) 331
BpuMI CCSGG 3 cut(s) 873, 1304, 1305
BsaAI YACGTR 2 cut(s) 53, 932
BsaBI GATNNNNATC 1 cut(s) 1239
BsaHI GRCGYC 1 cut(s) 1403
BsaJI CCNNGG 4 cut(s) 93, 809, 871, 1303
BsaWI WCCGGW 1 cut(s) 1070
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 271, 746, 809
Bse1I ACTGG 3 cut(s) 88, 550, 1031
Bse3DI GCAATG 1 cut(s) 1263
Bse8I GATNNNNATC 1 cut(s) 1239
BseAI TCCGGA 1 cut(s) 1070
BseBI CCWGG 1 cut(s) 810
BseDI CCNNGG 4 cut(s) 93, 809, 871, 1303
BseGI GGATG 7 cut(s) 451, 955, 1039, 1067, 1198, 1280, 1381
BseJI GATNNNNATC 1 cut(s) 1239
BseLI CCNNNNNNNGG 4 cut(s) 94, 271, 746, 809
BseMI GCAATG 1 cut(s) 1263
BseMII CTCAG 6 cut(s) 440, 549, 1311, 1335, 1344, 1353
BseNI ACTGG 3 cut(s) 88, 550, 1031
BseRI GAGGAG 1 cut(s) 523
BseXI GCAGC 2 cut(s) 398, 1300
BseYI CCCAGC 1 cut(s) 1284
BshFI GGCC 1 cut(s) 159
BsiHKAI GWGCWC 3 cut(s) 192, 516, 999
BsiHKCI CYCGRG 2 cut(s) 191, 1303
BsiSI CCGG 3 cut(s) 873, 1071, 1304
BslFI GGGAC 4 cut(s) 385, 470, 501, 1286
BslI CCNNNNNNNGG 4 cut(s) 94, 271, 746, 809
BsmAI GTCTC 3 cut(s) 255, 1340, 1394
BsmBI CGTCTC 1 cut(s) 1394
BsmFI GGGAC 4 cut(s) 385, 470, 501, 1286
BsnI GGCC 1 cut(s) 159
BsoBI CYCGRG 2 cut(s) 191, 1303
Bsp1286I GDGCHC 3 cut(s) 192, 516, 999
Bsp13I TCCGGA 1 cut(s) 1070
Bsp143I GATC 3 cut(s) 124, 852, 1122
BspACI CCGC 6 cut(s) 58, 130, 443, 567, 605, 1112
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 6 cut(s) 439, 548, 1312, 1336, 1345, 1354
BspEI TCCGGA 1 cut(s) 1070
BspLI GGNNCC 2 cut(s) 564, 1095
BspOI GCTAGC 1 cut(s) 636
BspPI GGATC 2 cut(s) 860, 1117
BspQI GCTCTTC 1 cut(s) 1000
BsrDI GCAATG 1 cut(s) 1263
BsrI ACTGG 3 cut(s) 88, 550, 1031
BssECI CCNNGG 4 cut(s) 93, 809, 871, 1303
BssMI GATC 3 cut(s) 124, 852, 1122
BssNI GRCGYC 1 cut(s) 1403
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 810
Bst6I CTCTTC 3 cut(s) 258, 669, 1000
BstACI GRCGYC 1 cut(s) 1403
BstAPI GCANNNNNTGC 1 cut(s) 629
BstBAI YACGTR 2 cut(s) 53, 932
BstC8I GCNNGC 4 cut(s) 436, 512, 634, 711
BstENI CCTNNNNNAGG 1 cut(s) 807
BstF5I GGATG 7 cut(s) 451, 955, 1039, 1067, 1198, 1280, 1381
BstKTI GATC 3 cut(s) 127, 855, 1125
BstMAI GTCTC 3 cut(s) 255, 1340, 1394
BstMBI GATC 3 cut(s) 124, 852, 1122
BstMWI GCNNNNNNNGC 6 cut(s) 41, 413, 440, 507, 629, 1259
BstNI CCWGG 1 cut(s) 810
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 4 cut(s) 808, 871, 1302, 1303
BstV1I GCAGC 2 cut(s) 398, 1300
BstX2I RGATCY 1 cut(s) 852
BstYI RGATCY 1 cut(s) 852
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 7 cut(s) 451, 955, 1039, 1067, 1198, 1280, 1381
BtsI GCAGTG 1 cut(s) 770
BtsIMutI CAGTG 2 cut(s) 557, 770
Cac8I GCNNGC 4 cut(s) 436, 512, 634, 711
Cfr13I GGNCC 2 cut(s) 157, 350
Cfr9I CCCGGG 1 cut(s) 1303
CseI GACGC 2 cut(s) 359, 1397
Csp6I GTAC 4 cut(s) 279, 914, 929, 974
CspCI CAANNNNNGTGG 2 cut(s) 702, 737
CviAII CATG 5 cut(s) 202, 247, 629, 1130, 1331
CviQI GTAC 4 cut(s) 279, 914, 929, 974
DpnI GATC 3 cut(s) 126, 854, 1124
DpnII GATC 3 cut(s) 124, 852, 1122
Eam1104I CTCTTC 3 cut(s) 258, 669, 1000
EarI CTCTTC 3 cut(s) 258, 669, 1000
EciI GGCGGA 1 cut(s) 620
Ecl136II GAGCTC 2 cut(s) 190, 514
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 2 cut(s) 192, 516
Eco47I GGWCC 1 cut(s) 350
Eco53kI GAGCTC 2 cut(s) 190, 514
Eco57I CTGAAG 2 cut(s) 938, 939
Eco72I CACGTG 1 cut(s) 53
Eco88I CYCGRG 2 cut(s) 191, 1303
EcoICRI GAGCTC 2 cut(s) 190, 514
EcoNI CCTNNNNNAGG 1 cut(s) 807
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 808
EcoT14I CCWWGG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 2 cut(s) 192, 516
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 1394
FaeI CATG 5 cut(s) 205, 250, 632, 1133, 1334
FalI AAGNNNNNCTT 2 cut(s) 839, 871
FaqI GGGAC 4 cut(s) 385, 470, 501, 1286
FatI CATG 5 cut(s) 201, 246, 628, 1129, 1330
FauI CCCGC 1 cut(s) 574
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 387, 1113, 1289
FokI GGATG 7 cut(s) 458, 962, 1046, 1054, 1185, 1267, 1388
FriOI GRGCYC 2 cut(s) 192, 516
Fsp4HI GCNGC 3 cut(s) 387, 1113, 1289
FspBI CTAG 4 cut(s) 147, 404, 633, 1049
GluI GCNGC 3 cut(s) 387, 1113, 1289
GsaI CCCAGC 1 cut(s) 1288
HaeIII GGCC 1 cut(s) 159
HapII CCGG 3 cut(s) 873, 1071, 1304
HgaI GACGC 2 cut(s) 359, 1397
Hin1I GRCGYC 1 cut(s) 1403
Hin1II CATG 5 cut(s) 205, 250, 632, 1133, 1334
HindIII AAGCTT 1 cut(s) 1076
HinfI GANTC 6 cut(s) 7, 114, 196, 398, 530, 896
HpaII CCGG 3 cut(s) 873, 1071, 1304
HphI GGTGA 2 cut(s) 32, 119
Hpy166II GTNNAC 4 cut(s) 23, 279, 497, 529
Hpy188I TCNGA 8 cut(s) 340, 538, 901, 958, 1354, 1363, 1387, 1408
Hpy188III TCNNGA 6 cut(s) 139, 193, 428, 690, 859, 1071
Hpy8I GTNNAC 4 cut(s) 23, 279, 497, 529
HpyAV CCTTC 6 cut(s) 157, 223, 265, 478, 913, 1078
HpyCH4IV ACGT 3 cut(s) 52, 931, 1403
HpyCH4V TGCA 6 cut(s) 344, 623, 792, 946, 1062, 1268
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 413, 440, 507, 629, 1259
HpySE526I ACGT 3 cut(s) 52, 931, 1403
Hsp92I GRCGYC 1 cut(s) 1403
Hsp92II CATG 5 cut(s) 205, 250, 632, 1133, 1334
Kpn2I TCCGGA 1 cut(s) 1070
Kzo9I GATC 3 cut(s) 124, 852, 1122
LguI GCTCTTC 1 cut(s) 1000
LmnI GCTCC 3 cut(s) 166, 805, 1195
Lsp1109I GCAGC 2 cut(s) 398, 1300
LweI GCATC 5 cut(s) 331, 645, 940, 1207, 1256
MaeI CTAG 4 cut(s) 147, 404, 633, 1049
MaeII ACGT 3 cut(s) 52, 931, 1403
MaeIII GTNAC 5 cut(s) 53, 182, 701, 835, 934
MalI GATC 3 cut(s) 126, 854, 1124
MboI GATC 3 cut(s) 124, 852, 1122
MboII GAAGA 6 cut(s) 245, 247, 656, 847, 1017, 1406
MflI RGATCY 1 cut(s) 852
MhlI GDGCHC 3 cut(s) 192, 516, 999
MluCI AATT 7 cut(s) 83, 239, 284, 391, 683, 714, 1181
MlyI GAGTC 3 cut(s) 407, 524, 890
MmeI TCCRAC 3 cut(s) 142, 638, 727
Mph1103I ATGCAT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 1070
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 3 cut(s) 258, 695, 987
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 2 cut(s) 132, 1112
MspI CCGG 3 cut(s) 873, 1071, 1304
MspR9I CCNGG 4 cut(s) 810, 873, 1304, 1305
MvaI CCWGG 1 cut(s) 810
MwoI GCNNNNNNNGC 6 cut(s) 41, 413, 440, 507, 629, 1259
NciI CCSGG 3 cut(s) 873, 1304, 1305
NdeII GATC 3 cut(s) 124, 852, 1122
NheI GCTAGC 1 cut(s) 632
NlaIII CATG 5 cut(s) 205, 250, 632, 1133, 1334
NlaIV GGNNCC 2 cut(s) 564, 1095
NmuCI GTSAC 3 cut(s) 53, 701, 934
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 205
OliI CACNNNNGTG 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 191
PciI ACATGT 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 1000
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 7, 114, 196
PkrI GCNGC 3 cut(s) 388, 1114, 1290
PleI GAGTC 3 cut(s) 406, 524, 890
PmaCI CACGTG 1 cut(s) 53
PmlI CACGTG 1 cut(s) 53
PpsI GAGTC 3 cut(s) 406, 524, 890
Ppu21I YACGTR 2 cut(s) 53, 932
PscI ACATGT 1 cut(s) 201
Psp124BI GAGCTC 2 cut(s) 192, 516
Psp6I CCWGG 1 cut(s) 808
PspCI CACGTG 1 cut(s) 53
PspFI CCCAGC 1 cut(s) 1284
PspGI CCWGG 1 cut(s) 808
PspN4I GGNNCC 2 cut(s) 564, 1095
PspPI GGNCC 2 cut(s) 157, 350
PsuI RGATCY 1 cut(s) 852
RsaI GTAC 4 cut(s) 280, 915, 930, 975
RsaNI GTAC 4 cut(s) 279, 914, 929, 974
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 2 cut(s) 192, 516
SapI GCTCTTC 1 cut(s) 1000
SaqAI TTAA 3 cut(s) 258, 695, 987
SatI GCNGC 3 cut(s) 387, 1113, 1289
Sau3AI GATC 3 cut(s) 124, 852, 1122
Sau96I GGNCC 2 cut(s) 157, 350
ScaI AGTACT 1 cut(s) 975
SchI GAGTC 3 cut(s) 407, 524, 890
ScrFI CCNGG 4 cut(s) 810, 873, 1304, 1305
SduI GDGCHC 3 cut(s) 192, 516, 999
SfaNI GCATC 5 cut(s) 331, 645, 940, 1207, 1256
Sfr274I CTCGAG 1 cut(s) 191
SinI GGWCC 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 191
SmaI CCCGGG 1 cut(s) 1305
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 191, 310
SmoI CTYRAG 2 cut(s) 191, 310
Sse9I AATT 7 cut(s) 83, 239, 284, 391, 683, 714, 1181
SsiI CCGC 6 cut(s) 58, 130, 443, 567, 605, 1112
SspMI CTAG 4 cut(s) 147, 404, 633, 1049
SstI GAGCTC 2 cut(s) 192, 516
StyD4I CCNGG 4 cut(s) 808, 871, 1302, 1303
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 3 cut(s) 55, 934, 1406
TaqI TCGA 2 cut(s) 112, 192
TasI AATT 7 cut(s) 83, 239, 284, 391, 683, 714, 1181
TatI WGTACW 3 cut(s) 278, 913, 973
TauI GCSGC 1 cut(s) 1115
TfiI GAWTC 3 cut(s) 7, 114, 196
Tru1I TTAA 3 cut(s) 258, 695, 987
Tru9I TTAA 3 cut(s) 258, 695, 987
TscAI CASTG 2 cut(s) 557, 777
TseFI GTSAC 3 cut(s) 53, 701, 934
TseI GCWGC 2 cut(s) 386, 1288
Tsp45I GTSAC 3 cut(s) 53, 701, 934
TspDTI ATGAA 5 cut(s) 61, 292, 617, 1224, 1269
TspMI CCCGGG 1 cut(s) 1303
TspRI CASTG 2 cut(s) 557, 777
VpaK11BI GGWCC 1 cut(s) 350
XagI CCTNNNNNAGG 1 cut(s) 807
XapI RAATTY 2 cut(s) 83, 284
XceI RCATGY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 191
XmaI CCCGGG 1 cut(s) 1303
XmiI GTMKAC 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 4 cut(s) 147, 404, 633, 1049
ZraI GACGTC 1 cut(s) 1404
ZrmI AGTACT 1 cut(s) 975
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.