MD03G1257800.v1.1

domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
34483954 .. 34508634
24681 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1257800.v1.1.491

Sequence Viewer

Length: 10803 bp
ATGTTTCAGGGATCGAAAGGGAAAACGATGAAATGGGGAACATTGCTTAAGGACTTAAGGGAGAAGGTCGGTCTCACTCATTCGCCGTCGTCTTCTTTATCTGCTTCAGCCTCCGCCGCCGCCGCTTCTTCGTCCTCGTCTCTCTCTGCCAATAACAATGCTAATTCAGCTCTTCACGGCTCGTATTCGCCTTCAAGAGACAAACATGAATTGGAATTGGACTTCAAAAGATTTTGGGAAGAGTTCCGGTCATCCAGCTCTGAAAAGGAGAAAGAAGCGGCCTTGAATTTAACTGTAGATGTCTTTTGTAGATTAGTAAAGCAGGATGCAAATGTAGCTCAATTAGTTACCATGTTAGTTGAAACACATATATTCTCATTTGTCCTGGGAAGGGCATTTGTAACAGATATTGAGAAGCTAAAAATCAGCAGCAGAAAAAGACATTTGGATGTGGAAAAAGTACTGAATTTTTTTTCAGAAGTCACAAAGGATGGCATCAGTCCTGGTTCAAATTTGTTAACTGCTTTACAAGTTCTAGCTTCTGGGCCTATTGATAAACAATCACTCCTTGATTCGGGTATATTTTGCTGTCTCATTCATATTCTCAATGCCCTTCTGGATCCTGATGAAGCCAATCAAAAGCAAAAGGCTACTGATCGTGATGAACTATTTTCAACTGAGAAAGATTATGATGGTGATGCTGGTCAAGTCCGTCGGCTTGAGGTAGAGGGGAGTGTTGTGCATATTATGAAAGCGCTGGCAAACCATCCTTTGGCAGCACAAAGTTTGATTGAGGATGATTCTCTTCAGTTGCTCTTTCAGATGGTTGCGAATGGCTCTTTGACAGTCTTCTCTCGATATAAGGAGGGCCTGGTTCTGCTGCACAGCATCCAGCTTCACAGACATGCTATGCAGATTCTTGGTCTTCTTTTGGTCAATGACAATGGGAGCACTGCACAATATCTTCGTAAACATCATCTGATCAAAGTTCTTTTAATGGCCGTCAAAGATTTCAATCCTGATTGTGGTGATCCTACATATACCATGGGCATTGTGGATTTGCTGCTTGAATGTGTGGAATTGTCATATAGACCTGAAGCTGGTGGTGTCAGGCTTAGGGAGGATATACATAATGCCCATGGTTATCAGTTCCTTGTACAGTTTGCTTTAACACTTTCCTCAATGCCGAAAAGTCAGGGGTTCCAATCTGTTCATTTTAAATCTTCAGACCAAAATTCTGCTTCAGGCGGTTCCCATGCACAGGATGTTGTAGACATGCAGGATTCCAGGGGAGAAAAAGGACCCTTAGCTGAACAACTTTCTCCCACACTGTCTAGGTTGCTTGATGTTCTTGTTAATCTAGCTCAAACTGGCTCAACTGAATCGAAAGGTTCCAAGTCTTCTCATACCAGGTCCAGTGGCCATAGCAGAAGTTGTACACCATCTTCAGACAGATTGGCTGATGAAGTTTGGGAAAAGGACAATAATAAAGTCAAAGACCTTGAAGCAGTTCAGATGTTGCAGGATATTTTCCTCAAAGCAGATAGCAGGGAGTTGCAAGCAGAAGTTCTGAATAGAATGTTCAAAATATTTTCAAGTCATCTTGAAAATTATAAGTTGTGCCAGCAGTTACGGACTGTTCCACTTTTCATCCTAAATATGGCTGGTTTTTCTCCATCTTCCCAAGAGATACTTCTAAAAATTCTTGAGTATGCTGTGACTGTTGTGAATTGCGTCCCTGAGCAAGAGTTACTGTCACTTTGTTGCTTGTTGCAGCAACCAATATCATCAGAGTTAAAGCACACTGTACTTTCTTTTTTTGTAAAACTTCTATCTTTTGACCAGCAGTACAAAAAGGTCCTCCGAGAAGTTGGTGTCCTGGAGGTATTGTTGGATGACCTGAAGCAGCACAAGTTGCTTTTGGGTTCAGAACATCAAAGTGGCAATACTAATCAGTTGGAGAGAAAGTCCAGCTCAAGCAGCTTTAAAAAGCACTTGGACAGCAAGGACGTAATTATTTCATCACCCAGGTTAATGGAATCTGGTTCAGTGAAGCTTCCTATGTTTGAAGTTGACCGTACAATTACTATTGCATGGGATTGTATGGTCTCTTTATTAAAGAAAACTGAAACCAATCAATCATCTTTCCGTGTGGCTAATGGTGTAACTGCTGTTCTCCCGTTTCTTGTGTCTGACACACACCGTGCAGGGGTGCTTAGGGTATTGTCATGTTTGGTCATTGAAGATAGTACCCAGGCACATCCTGAAGAATTAGGTGTGATTGTTGAAATTCTAAAAAGTGGAATGGTTACCAGTGTTTTGGGATCTCAATACAGGCTTCAAAATGATGCAAAATGTGACACTATGGGGGCTTTATGGCGCATTCTGGGAGTTAACAACTCAGCTCAGAGGGTTTTTGGTGAAGCCACTGGTTTTTCTCTTCTGCTTACTACACTCCATAGTTTCCAAAGTGACGGAGAGCATTCAGATCAATCTTCTTTAGAGGTTTACATTAAGGTGTTTACGTATTTGTTGCGTCTAGTGACTGCTGGAGTGTGTGATAATGCTGTTAATAGGACAAAATTGCACACACTTATATCATCCCAAACTTTCTATGATCTTCTGTCTGAGTCAGGCTTGCTTAGTGTGGACTGTGAAAAGCAAGTCATACAATTATTGTTTGAACTAGCTCTTGAAATTGTGCTTCCACCCTTCTTAACATCAGAAAGTGTTACATCCTCGGATGTGCTTGATAATGAGTCATCAAGTTTTTCAATAATGACCACATCAGGCTCATTTCATCCTGATAAGGAACGGGTGTTTAACGCTGGTGCTGTCAGAGTTCTTATTCGGTCGTTACTGCTCTTTACTCCAAAGATGCAGCTTGAAGTTCTTAACCTTATTGAAAGGCTTGCTCGTGCTGGTCCCTTCAATCAGGAAAACCTCACCTCTATAGGTTGCATTGAACTTCTGCTGGAAACCATTCACCCCTTCCTTTTGGGCTCATCTCCATTAATGAAGTATGCTCTGGAGATTGTTGAAGTACTTGGGGCATACAGGCTATCTGCATCAGAACTTCGAGTGCTTATTAGATATGTGTTGCAAATGAGGTCAATGAAGTCAGGTCGTATACTTGTGGACATGATGGAAAGGTTAATTGTCATGGAGGATTCAGAAAATATTTCCCTTGCGCCATTTGTAGAGATGGACATGAGCAAGATTGGTCATGCTTCCATTCAGGTTTCTCTGGGAGAAAGATCATGGCCTCCAGCAGCTGGTTATTCATTTGTCTGTTGGTTTCAGTTTCGAAATCTCTTGAAGTTGCAAGCAAAAGAAACAGAGTCCAAAGCTGGTCCTTTTAAGAAGTGGAGCAGTTCTGCCAGGAAACATCATGAACGGCATATTCTCAGGATATTTTCTGTTGGTGCAGCAAATAATGAAAATGCATTCTATGCAGAATTATATCTTGATGAGGATGGTGTTCTTACCCTTGCAACTAGCAATTCTTGCTCCTTATCGTTTTCTGGATTGGAACTTGAGGAAGGCAGGTGGCATCACCTTGCAGTTGTACATAGCAAGCCAAATGCTCTTGCTGGATTGTTCCAAGCCAGTGTTGCTTATGTGTATCTTGATGGAAAGCTTAGACACACAGGGAAACTAGGATATTCTCCATCTCCGATTGGAAAACCTTTGCAGGTAACCGTTGGGACTCCAGTTACTTGTGCAAGAGTTAGTGACTTGACCTGGAAGGTCCGTTCTTGCTACCTTTTTGAGGAGGTGCTCACCTCAGGTTGTATTTGTTTCATGTACATTCTTGGTAGAGGATATAGAGGGCTCTTCCAGGACACAGATCTTCTTCGTTTTGTCCCTAACCAGGCATGTGGTGGCGGTAGCATGGCTATCTTAGATACATTAGATGCTGACTTGACCTTGGCTTCTAGTACACAGAAGCTTGACATATCTAATAAGCAAGGAGACTCCAAGGCAGATGGCAGTGGAATTGTTTGGGACTTGGAGAGGCTAGGTTCTCTCTCTTTACAGCTCTCTGGGAAGAAGCTTATATTTGCATTTGATGGAACCTGTGCAGAAGCTATTCGAGCATCAGGGGAGGTCTCCATGCTCAATCTAGTTGATCCATTATCAGCAGCTGCTTCTCCTATAGGGGGTATACCACGATTTGGGCGTCTTCATGGGGATATTTACCTATGTAGGCAATGTGTAATTGGTGATACTGTCTGCCTGGTCGGTGGGATGACTGTTATCCTGGCCTTAGTTGAGGCTGCTGAGACTAGGGACATGCTACACATGGCCCTTACCTTACTGGCCTCTGCCCTTCATCAGAATCCTCAGAATGTGAGAGACATGCAGAAATGCCGGGGATACCATTTGCTGGCTGTCTTTTTGCGTCGTCGAATGTTATTGTTCGACATGCAATGTCTTGAGATATTTTTCCAGATTGCTGCCTGTGAAGCTTCATTCTCAGAACCAAGGAAGTTGATATATAATCGAACTAATTTGTCAGCAGCTACAACAATGCAGGAAACAAGTTTTGAGGAACTTAACTTGTCAAGGTTTCGTGATGAATTTTCTTCAGTCGGATCTCAAGGAGACATGGATGATTTTTCTGCCCAAAAAGATTCATTTAGCCATATTTCAGAGCTTGAAAGTGCTGATATTCCGGCTGAAACCTCAAATTGCATTGTCTTGTCAAATGAAGACATGGTTGAACATGTCTTGTTGGATTGGACATTGTGGGTAACTGCACCAGTTGCAATTCAAATTGCACTTCTTGGTTTTCTAGAGCATCTAGTGTCCATGCACTGGTACAGAAATCATAACCTTACTGTTCTGCGCCGAATAAACCTTGTTCAACATTTATTAGTTACTCTTCAAAGGGGTGATGTTGAAGTTCCCGTTTTGGAGAAATTGGTTGTATTGCTTGGTGTCATTTTGGAAGATGGGTTTCTCTCTTCTGAACTGGAACATGTGGTTAGGTTTGTGATTATGACATTTGATCCACCTGACTTGACACCCCGACATCCAATAATGCGTGAGGCCATGGGAAAGCATGTAATCGTGAGAAACATGCTGTTGGAGATGCTTATTGATCTGCAAGTAACCATTAAATCTGAAGAGGTGCTTGAGCAGTGGCATAAGATTGTGTCTTCTAAATTGATTACATATTTTCTAGACGAATCTGTTCACCCAACAAGTATGAGATGGATCATGACTCTTCTTGGAGTTTGTCTTACTTCATCCCCTACATTTGCACTAAAATTTCGCACCAGTGGAGGTTATCAAGGCTTGAACCGGGTGCTTCCAAGCTTCTATGATTCCCCAGACATATATTACATTTTGTTCTGTCTGATATTTGGAAAGTCTGTCTATCCTAGATTGCCGGAAGTTCGCATGCTAGACTTTCACGCTCTTATGCCAAATGATGGAAGTTTTGTGGAACTGAAATTCGTAGAATTGTTGGAATCTGTTATTGCCATGGCAAAATCTACATTTGATAGGCTGAGCGTTCAGTCAATGCTTGCTCACCAATCTGGTAATCTTTCCCAGGTTGGTGCTGGCCTTGTGGCAGAACTTGTGAATGGAAATGCAGACATGGCTGGGGAGCTGCAAGGTGAAGCATTGATGCATAAAACATATGCGGCACGCTTAATGGGTGGGGAGGCATCGGCTCCTTTTGCTGCTACTTCGGTCTTGAGATTTATGGTTGATTTGGCAAAAATGTGTTCCCCTTTCACTGGTGTCTGCAAAAGAGCAGAGTTTCTTGAAAGCTGCATTGACCTATATTTTTCTTGTGTCAGAGCGGCCCATGCTGTGAAGATGGCAAAGGAGCTATCTGTAAAGGCAGAAGAGAAGAACTTGAATGATTGTGACGATTCCTGTAGTTCCCAGAACACATTTTCTAGCCTACCTCATGAGCAGGATCAGTCTGCCAAAATCTCCATTAGTGTTGGAAGCTTCCCTCCTGGTCAGGTGAGTTCAAATTCTGAAGACACGGCTGTTCCCCCAAATTCGGGGACTGATGATAAAACAGAGACCAACGCTACTGCAGCCGAGCAGGAATTACACAAATCAGTGCAAGACCATGTACAAGCTGTTCAGAGCTTAGAAATTGATAATGTTGACCAGGTTTCCGCCCCCTCCAGCACAAATGATTATAATTTCCGTAAGAGGGTCACCCTGGAGCCCATTAAACCAGTGGATTCTCAGAGTTCCACATCGTTTACCATGCTGGATTCTCCCAATTTATCAGAGAAGTCTAGTTCTAGACTCCCACTCACACTCTCTCCTTCTCCTGTTTTAGCATTGACATCTTGGCTGGGAAGTGGAGGCTATAATGAATCCAAATCTCCCTCAGTTGCCACTCCTTCCATTGATTCTTCTGTGACTACCACTGAATTTGATCCATCTTCAGACCTGAAGTCTCCTGGACCTTCTACTGCAAGTACCTTTTTTTCAGCTAGTCCAAAGCTACTTCTTGAAATGGATGAATGTGGCTATGGAGGTGGTCCTTGTTCTGCCGGAGCCACTGCTGTTTTAGATTTTATTGCAGAAGTTCTGTCTGAGTTTGTGACTGAGCAAATTAAAGTATCACAAATTATAGAGGGAATCTTGGAAAGTGTTCCATTATATGTTGATGCAGATTCCATGTTGGTATTCCAGGGATTGTGCCTTAGTCGACTGATGAACTTTCTGGAAAGGCGTCTCTTGCGCGACGATGAAGAAAATGAGAAAAAGCTAGATAAAAATCGTTGGTCCTCAAATTTAGATTCATTATGCTGGATGATAGTGGATCGTGCATATATGGGCGCTTTTCCTCAACCTTCTGGAATACTAAAGACACTCGAGTTCTTATTATCTATGCTACAATTGGCAAATAAAGATGGTCGAATTGAAGAAGCTACTCCTAGTGGGAAGAGCCTATTATCTATTGGAAGAGGGAGCAGGCAACTTGATGCTTATTTACATTCAATTCTTAAAAATACAAATCGTATGATACTGTATTGCTTTCTGCCATCATTCTTGTCTTCAATAGGAGAAGATGATCTGCTTTTGTGCTTAGGTTTGCTAGTTGAATCAAAGAAGAGAGTTTCCTCCAACTCTTCACTTGATAATTCAGGAATTGATATCTGCACGGTCTTACAGTTATTAGTTGCTCACAGGCGAATTATATTCTGTCCCAGCAATATGGATACAGATATAAATTGTTGTCTTTGTGTCAATTTAATCTCTCTCCTCTTTGACCAACGACAGAATGTGCAGAACTTGGCTGTTGATATTGTCAAGTATCTCCTGGTGCATCGTCGGGTGGCTCTAGAAGATTTGCTGGTCTCAAAGCCAAACCAAGGACACCAACTGGATGTGCTACATGGGGGATTTGACAAGTTATTAACTGAAAATTTATCTGCTTTCTTTGAATGGCTTCAAAGTTCTGAATTGATGGTGAATAAAGTACTAGAGCAGTGTGCTTCCATTATGTGGGTACAGTATATTACTGGATCAGCAAAATTCCCAGGAGTGAGAATTAAAGCTATGGAGGGTCGTCGCAAGAGAGAAATGGGGAGAAAATCAAGGGATGCGTCAAAGTTAGATGTAAAGCACTGGGAGCAGGTGAATGAACGGAGATATGCACTAGAATTGGTGCGCGATGCTATGTCCACTGAGCTAAGAGTTGTGCGTCAAGACAAGTATGGATGGGTTCTGCATGCTGAGAGCGAGTGGCAAACCCATCTTCAACAACTTGTCCATGAGCGGGGAATATTTCCAATGCGAAAATCCTCCGTTAATCAGGATCCTGATTGGCAGCTTTGTCCAATTGAAGGTCCATACAGGATGCGCAAAAAACTTGAGCGCTGCAGATTGAAACTTGATACCATCCAAAATGTTCTTGATGGACAATTTGAAGTAGGGAAAGCAGAGCTGTCCAAAGAGAAAAATGAGAATGATCTGAATGCTTCTGATAACGATTCTGAACCGTTCTTTCAACTTCTGACTGATAGTGCCAAACAGAATGGCCTTGATGGTGAGCTGTATGATGGATCATTTTTTAAAAAACCAGATAATGCCAAAGATGTTGCTTCTGCTAGGACTGAATGGAATGATGATAGAGCTAGTAGTCTCAATGAAGCAAGTTTGCACTCTGCACTCGAGTTTGGTGGCAAATCTAGTTCAGCATCTGTCCCCAATGATGACAGTGTACAAGAAAGATCTGACCTAGGGTCTCCATGGCAATCTTCTTCTGCAAGAATTGATGATGTCAAAGTCACAGATGATAAATCAGATAAGGAACTTCATGATAATGGTGAATACCTGATCAGACCTTATCTGGAACCTTTTGAAAAGATACGATTTCGATACAATTGTGAACGAGTTATGGGTCTGGACAAGCATGATGGTATATTTTTAATCGGCGAGCTTTCTCTGTATGTGATTGAAAATTTCTATATCGATGACTCTGCGTGTATTTGTGAAAAGGAATGCAAAGATGAACTCTCTATCATTGATCAGGCTCTTGGTGTAAAGAAGGATGTTAATTTGGATTTCCAGTCAAAGTCAACTTCATCTTGGGGAGCAACAGAAAAGTCAGGAGTTGGGGGAAGAGCATGGGCCTATAATGGTGGTGCATGGGGAAAGGAGAAAGTCTGTACTAGTGGTAGTCTACCTCACCCTTGGAACATGTGGAAACTTAACAGTGTTCATGAGCTTTTGAAGCGTGATTACCAGCTGCGTCCTGTTGCTGTTGAAATTTTTAGCATGGATGGATGTAATGATCTCCTGGTGTTCCACAAAAAAGAAAGGGAAGAAGTTTTCAGAAATCTGGTAGCCATGAATCTTCCTAGAAATAGCATGTTGGACACAACCATATCAGGATCAGCAAAACAAGAAAGCAATGAGGGTAGCCGACTATTTAAGTCAATGGCCAAGTCCTTTTCAAAGAGATGGCAAAATGGAGAAATAAGCAATTTCCAGTACCTCATGCATCTCAACACGTTGGCAGGACGGGGGTACAGTGATCTTACCCAATATCCAGTTTTTCCGTGGGTTCTTTCAGATTACGAGAGTGAAAACCTGGACTTGTTAGATCCAAAAACATTTCGTGGACTTGACAAGCCGATGGGTTGTCAAACGTTAGAGGGCGAAGAAGAATTCAGGAAAAGGTACGAGAGCTGGGACGATCCGGAGGTCCCAAAATTCCATTATGGTTCTCATTATTCCAGTGCTGGGATTGTCCTCTTCTATCTTCTACGCCTACCACCTTTCAGTGCAGAGAATCAAAAGCTACAAGGAGGGCAATTTGACCATGCTGATCGTCTTTTTAATAGTATTAGAGATACTTGGTTCAGTGCAGCTGGAAAGGGCAACACATCAGATGTGAAGGAGTTGATTCCTGAATTTTTCTACATGCCAGAATTCCTGGAAAATCGTTTCAATCTTGATTTGGGTGAGAAACAATCAGGAGAGAAGGTTGGTGATGTTGGCTTACCTCCATGGGCTAAAGGCAGTGCTAGAGAATTCATCAGGAAGCACAGGGAGGCCCTGGAATCTGATTACGTTTCACAAAATTTGCATCATTGGATAGATCTCATTTTTGGATATAAACAGAGAGGAAAGGCAGCTGAGGAAGCTGTGAATGTTTTCTATCACTACACGTACGAGGGGAGTGTAGACATAGACTCAGTGACAGATCCTGCAATGAAAGCCTCAATTCTAGCACAAATTAATCATTTTGGGCAGACACCCAAACAGCTATTCCTCAAACCCCATGTGGAAAGGCAGGTCAACAGAAGGGTTCCTCATCCACTCAAGTACTCAAACCATCTTGTTCAGCATGAGATACGCAAGACATCGTCTTCTATAACTCAGATTGTTACTGTCAACGAGAAAATCCTAGTGGCAGGAACAAATTGTTTGCTTAAGCCAAGAACGTATACCAAATATGTTGCATGGGGTTTTCCAGATCGTAGCTTAAGATTTATGAACTATGATCAAGATCGACTCCTATCCACACACGAGAATCTTCATGGGGGCAACCAGATTCAGTGTACTGGCGTTAGCCATGATGGTCAGATTCTGGTCACTGGGGCTGATGATGGCTTAGTTTCTGTTTGGAGAATCAGTAATTACGGTCCTCGTGTTTTGAGACGCTTGCAGTTGGAGAAGGCACTTTGCGCCCACACATCCAAAATTACTTGTCTTCATGTTAGCCAGCCTTACATGCTGATTGTGAGTGGATCAGATGACTGCACTGTTGTTGTATGGGATCTTAGCTCCTTGGTTTTTGTTAGGCAGCTCCCTGAGTTCCCAGCGCCGATTTCTGCAATTTATGTGAATGACTTGACAGGGGAAATTGTGACAGCAGCTGGAATTTTACTTGCAGTTTGGAGCGTTAATGGGGACTGTCTTGCAATGGTTAACACGTCTCAACTGCCTTCTGATTCAATTCTTTCTGTGACAAGTAGTTCATTTTCTGATTGGCTGGATACGAACTGGTTTGTAACCGGTCATCAGAGTGGGGCTGTTAAGGTTTGGCAAATGGTTCACCACACCAACCTCGAGAGTTCCCAACAGAAGTCAACGAGCAATGGATTGGGGGGTTTAAATCTCAATGATAAAGCACCAGAGTACAGGTTGGTCCTCCACAAGGTGCTCAAGTTTCATAAGCATCCTGTTACTGCCCTTCTCCTTACAAATGACCTCAAGCAGTTACTAAGTGGGGATTCTGGTGGGCATTTGCTGTCATGGACAGTGCCAGATGAGAGCTTGAGAGGTTCAATGAATCAGGGGTGA

Protein Analysis

3601

Amino Acids

401.37

Weight (kDa)

5.72

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_BEACH PF14844 2896 - 2945 9.1e-07 PH domain associated with Beige/BEACH
Beach PF02138 2984 - 3263 1.4e-119 Beige/BEACH domain
WD40_CDC20-Fz PF24807 3309 - 3469 8.5e-08 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 3315 - 3449 7.1e-12 THOC3 beta-propeller domain
WD40_Prp19 PF24814 3316 - 3469 6.7e-11 Prp19 WD40 domain
NBCH_WD40 PF20426 3319 - 3478 6e-10 Neurobeachin beta propeller domain
Beta-prop_WDR5 PF25175 3324 - 3521 2.2e-15 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 3339 - 3516 5.9e-08 TEP-1 second beta-propeller
WDR55 PF24796 3343 - 3516 6.5e-06 WDR55
Beta-prop_WDR3_1st PF25173 3348 - 3516 8.8e-13 WDR3 first beta-propeller domain
WD40 PF00400 3392 - 3426 6.1e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1614, 6174
AarI CACCTGC 2 cut(s) 3537, 7615
Acc16I TGCGCA 1 cut(s) 7853
Acc36I ACCTGC 4 cut(s) 3537, 3685, 7615, 9781
AccB7I CCANNNNNTGG 7 cut(s) 772, 3275, 4178, 4390, 4821, 5441, 7494
AccBSI CCGCTC 2 cut(s) 5819, 7768
AccI GTMKAC 7 cut(s) 1272, 3130, 4168, 6694, 8674, 9681, 9944
AccII CGCG 2 cut(s) 6729, 7662
AccIII TCCGGA 1 cut(s) 9193
AclI AACGTT 1 cut(s) 9143
AcoI YGGCCR 3 cut(s) 999, 1420, 8934
AcyI GRCGYC 2 cut(s) 4183, 6718
AdeI CACNNNGTG 2 cut(s) 2204, 10660
AfeI AGCGCT 2 cut(s) 756, 7868
AflII CTTAAG 4 cut(s) 47, 55, 9929, 9982
AflIII ACRYGT 6 cut(s) 4729, 4984, 8691, 9003, 9663, 10431
AgeI ACCGGT 1 cut(s) 10514
AhdI GACNNNNNGTC 2 cut(s) 6436, 8233
AhlI ACTAGT 1 cut(s) 8663
AjiI CACGTC 1 cut(s) 10434
AjuI GAANNNNNNNTTGG 4 cut(s) 1677, 1709, 9749, 9781
AloI GAACNNNNNNTCC 2 cut(s) 3739, 3771
Alw21I GWGCWC 3 cut(s) 953, 3783, 10665
AlwNI CAGNNNCTG 6 cut(s) 3275, 4148, 8192, 9704, 10087, 10376
Ama87I CYCGRG 3 cut(s) 6860, 8162, 10568
Aor13HI TCCGGA 1 cut(s) 9193
Aor51HI AGCGCT 2 cut(s) 756, 7868
AseI ATTAAT 2 cut(s) 3014, 9735
AsiGI ACCGGT 1 cut(s) 10514
Asp700I GAANNNNTTC 7 cut(s) 1509, 2982, 4092, 5199, 6636, 7437, 9650
AspA2I CCTAGG 1 cut(s) 8230
AsuC2I CCSGG 2 cut(s) 4376, 5312
AsuII TTCGAA 1 cut(s) 3307
AvaI CYCGRG 3 cut(s) 6860, 8162, 10568
AvrII CCTAGG 1 cut(s) 8230
AxyI CCTNAGG 1 cut(s) 3787
BaeI ACNNNNGTAYC 2 cut(s) 8362, 8395
BalI TGGCCA 2 cut(s) 1422, 8936
BamHI GGATCC 2 cut(s) 619, 7807
BanII GRGCYC 3 cut(s) 3005, 3837, 6204
BarI GAAGNNNNNNTAC 4 cut(s) 1429, 1461, 8717, 8749
BauI CACGAG 3 cut(s) 2916, 10025, 10146
Bbv12I GWGCWC 3 cut(s) 953, 3783, 10665
BbvCI CCTCAGC 1 cut(s) 9633
BceAI ACGGC 5 cut(s) 70, 193, 986, 3413, 6027
BcgI CGANNNNNNTGC 2 cut(s) 8453, 8487
BciVI GTATCC 3 cut(s) 4373, 7201, 10489
BclI TGATCA 4 cut(s) 981, 8328, 8518, 10000
BcnI CCSGG 2 cut(s) 4376, 5312
BcuI ACTAGT 1 cut(s) 8663
BfmI CTRYAG 6 cut(s) 294, 2952, 4158, 5896, 6063, 7870
BfoI RGCGCY 4 cut(s) 758, 6828, 7870, 10325
BfrI CTTAAG 4 cut(s) 47, 55, 9929, 9982
BfuAI ACCTGC 4 cut(s) 3537, 3685, 7615, 9781
BfuI GTATCC 3 cut(s) 4373, 7201, 10489
BglII AGATCT 3 cut(s) 3850, 8222, 9595
BlnI CCTAGG 1 cut(s) 8230
BlpI GCTNAGC 1 cut(s) 5519
BmcAI AGTACT 4 cut(s) 462, 3045, 7470, 9824
BmeRI GACNNNNNGTC 2 cut(s) 6436, 8233
BmeT110I CYCGRG 3 cut(s) 6860, 8162, 10568
BmgBI CACGTC 1 cut(s) 10434
BmrI ACTGGG 2 cut(s) 7627, 10104
BmuI ACTGGG 2 cut(s) 7627, 10104
BpmI CTGGAG 7 cut(s) 1901, 2571, 3050, 3252, 3696, 6142, 6218
Bpu10I CCTNAGC 6 cut(s) 1115, 1306, 1740, 2216, 7075, 9633
Bpu1102I GCTNAGC 1 cut(s) 5519
Bpu14I TTCGAA 1 cut(s) 3307
BpuMI CCSGG 2 cut(s) 4376, 5312
Bsa29I ATCGAT 1 cut(s) 8463
BsaAI YACGTR 2 cut(s) 2526, 9666
BsaBI GATNNNNATC 3 cut(s) 1014, 6762, 10005
BsaHI GRCGYC 2 cut(s) 4183, 6718
BsaI GGTCTC 6 cut(s) 77, 2113, 4117, 6044, 7351, 8241
BsaWI WCCGGW 3 cut(s) 246, 9193, 10514
Bse118I RCCGGY 1 cut(s) 10514
Bse21I CCTNAGG 1 cut(s) 3787
Bse3DI GCAATG 7 cut(s) 41, 4220, 4439, 8911, 9714, 10428, 10603
Bse8I GATNNNNATC 3 cut(s) 1014, 6762, 10005
BseAI TCCGGA 1 cut(s) 9193
BseCI ATCGAT 1 cut(s) 8463
BseJI GATNNNNATC 3 cut(s) 1014, 6762, 10005
BseMI GCAATG 7 cut(s) 41, 4220, 4439, 8911, 9714, 10428, 10603
BseRI GAGGAG 2 cut(s) 3788, 7241
BseYI CCCAGC 6 cut(s) 5615, 6334, 7196, 9183, 9236, 10318
Bsh1236I CGCG 2 cut(s) 6729, 7662
Bsh1285I CGRYCG 1 cut(s) 2855
BshTI ACCGGT 1 cut(s) 10514
BshVI ATCGAT 1 cut(s) 8463
BsiEI CGRYCG 1 cut(s) 2855
BsiHKAI GWGCWC 3 cut(s) 953, 3783, 10665
BsiHKCI CYCGRG 3 cut(s) 6860, 8162, 10568
BsiSI CCGG 8 cut(s) 247, 4375, 4679, 5311, 5399, 6537, 9194, 10515
BsiWI CGTACG 1 cut(s) 9666
BsmBI CGTCTC 4 cut(s) 144, 6725, 10150, 10440
BsmI GAATGC 5 cut(s) 2382, 2482, 3446, 7972, 8498
Bso31I GGTCTC 6 cut(s) 77, 2113, 4117, 6044, 7351, 8241
BsoBI CYCGRG 3 cut(s) 6860, 8162, 10568
Bsp119I TTCGAA 1 cut(s) 3307
Bsp1286I GDGCHC 6 cut(s) 953, 3005, 3783, 3837, 6204, 10665
Bsp13I TCCGGA 1 cut(s) 9193
Bsp1407I TGTACA 6 cut(s) 1156, 1436, 3568, 3807, 6103, 8212
Bsp1720I GCTNAGC 1 cut(s) 5519
Bsp19I CCATGG 6 cut(s) 1044, 1138, 5058, 5493, 8240, 9503
BspDI ATCGAT 1 cut(s) 8463
BspEI TCCGGA 1 cut(s) 9193
BspFNI CGCG 2 cut(s) 6729, 7662
BspHI TCATGA 5 cut(s) 3391, 5226, 5929, 8308, 8713
BspMAI CTGCAG 2 cut(s) 6067, 7874
BspMI ACCTGC 4 cut(s) 3537, 3685, 7615, 9781
BspQI GCTCTTC 4 cut(s) 177, 3842, 6926, 8608
BspT104I TTCGAA 1 cut(s) 3307
BspTI CTTAAG 4 cut(s) 47, 55, 9929, 9982
BspTNI GGTCTC 6 cut(s) 77, 2113, 4117, 6044, 7351, 8241
BsrBI CCGCTC 2 cut(s) 5819, 7768
BsrDI GCAATG 7 cut(s) 41, 4220, 4439, 8911, 9714, 10428, 10603
BsrFI RCCGGY 1 cut(s) 10514
BsrGI TGTACA 6 cut(s) 1156, 1436, 3568, 3807, 6103, 8212
BssAI RCCGGY 1 cut(s) 10514
BssNAI GTATAC 3 cut(s) 3131, 4169, 9945
BssNI GRCGYC 2 cut(s) 4183, 6718
BssSI CACGAG 3 cut(s) 2916, 10025, 10146
Bst1107I GTATAC 3 cut(s) 3131, 4169, 9945
Bst2BI CACGAG 3 cut(s) 2916, 10025, 10146
BstACI GRCGYC 2 cut(s) 4183, 6718
BstAFI CTTAAG 4 cut(s) 47, 55, 9929, 9982
BstAPI GCANNNNNTGC 4 cut(s) 1915, 3452, 3507, 4769
BstAUI TGTACA 6 cut(s) 1156, 1436, 3568, 3807, 6103, 8212
BstBAI YACGTR 2 cut(s) 2526, 9666
BstBI TTCGAA 1 cut(s) 3307
BstDSI CCRYGG 7 cut(s) 1044, 1138, 5058, 5493, 8240, 9053, 9503
BstEII GGTNACC 3 cut(s) 2308, 3697, 6190
BstENI CCTNNNNNAGG 2 cut(s) 3770, 10655
BstFNI CGCG 2 cut(s) 6729, 7662
BstH2I RGCGCY 4 cut(s) 758, 6828, 7870, 10325
BstMCI CGRYCG 1 cut(s) 2855
BstPI GGTNACC 3 cut(s) 2308, 3697, 6190
BstSFI CTRYAG 6 cut(s) 294, 2952, 4158, 5896, 6063, 7870
BstSNI TACGTA 1 cut(s) 2526
BstUI CGCG 2 cut(s) 6729, 7662
BstXI CCANNNNNNTGG 4 cut(s) 2035, 2320, 3881, 7204
BstZ17I GTATAC 3 cut(s) 3131, 4169, 9945
Bsu15I ATCGAT 1 cut(s) 8463
Bsu36I CCTNAGG 1 cut(s) 3787
BsuI GTATCC 3 cut(s) 4373, 7201, 10489
BsuTUI ATCGAT 1 cut(s) 8463
BtgI CCRYGG 7 cut(s) 1044, 1138, 5058, 5493, 8240, 9053, 9503
BtgZI GCGATG 1 cut(s) 7677
BtrI CACGTC 1 cut(s) 10434
BtsI GCAGTG 6 cut(s) 951, 4000, 5153, 6543, 7484, 9523
BveI ACCTGC 4 cut(s) 3537, 3685, 7615, 9781
CaiI CAGNNNCTG 6 cut(s) 3275, 4148, 8192, 9704, 10087, 10376
CciI TCATGA 5 cut(s) 3391, 5226, 5929, 8308, 8713
Cfr10I RCCGGY 1 cut(s) 10514
ClaI ATCGAT 1 cut(s) 8463
CseI GACGC 9 cut(s) 1723, 2525, 4172, 4394, 6707, 7584, 7682, 8732, 10167
CsiI ACCWGGT 2 cut(s) 1409, 6141
CspAI ACCGGT 1 cut(s) 10514
CspCI CAANNNNNGTGG 4 cut(s) 5007, 5042, 6397, 6432
DraI TTTAAA 4 cut(s) 1219, 1987, 8065, 10614
DraIII CACNNNGTG 2 cut(s) 2204, 10660
DriI GACNNNNNGTC 2 cut(s) 6436, 8233
EaeI YGGCCR 3 cut(s) 999, 1420, 8934
Eam1105I GACNNNNNGTC 2 cut(s) 6436, 8233
EciI GGCGGA 2 cut(s) 103, 6139
Eco105I TACGTA 1 cut(s) 2526
Eco24I GRGCYC 3 cut(s) 3005, 3837, 6204
Eco31I GGTCTC 6 cut(s) 77, 2113, 4117, 6044, 7351, 8241
Eco32I GATATC 1 cut(s) 7144
Eco47III AGCGCT 2 cut(s) 756, 7868
Eco81I CCTNAGG 1 cut(s) 3787
Eco88I CYCGRG 3 cut(s) 6860, 8162, 10568
Eco91I GGTNACC 3 cut(s) 2308, 3697, 6190
EcoNI CCTNNNNNAGG 2 cut(s) 3770, 10655
EcoO109I RGGNCCY 5 cut(s) 868, 1301, 1858, 9199, 9550
EcoO65I GGTNACC 3 cut(s) 2308, 3697, 6190
EcoRI GAATTC 3 cut(s) 9161, 9425, 9527
EcoRV GATATC 1 cut(s) 7144
EcoT22I ATGCAT 3 cut(s) 3448, 5646, 8997
EcoT38I GRGCYC 3 cut(s) 3005, 3837, 6204
Esp3I CGTCTC 4 cut(s) 144, 6725, 10150, 10440
FalI AAGNNNNNCTT 4 cut(s) 1677, 1709, 5124, 5156
FauI CCCGC 1 cut(s) 7761
FauNDI CATATG 1 cut(s) 5653
FbaI TGATCA 4 cut(s) 981, 8328, 8518, 10000
FblI GTMKAC 7 cut(s) 1272, 3130, 4168, 6694, 8674, 9681, 9944
FriOI GRGCYC 3 cut(s) 3005, 3837, 6204
FspI TGCGCA 1 cut(s) 7853
GsaI CCCAGC 6 cut(s) 5619, 6338, 7200, 9187, 9240, 10322
GsuI CTGGAG 7 cut(s) 1901, 2571, 3050, 3252, 3696, 6142, 6218
HaeII RGCGCY 4 cut(s) 758, 6828, 7870, 10325
HapII CCGG 8 cut(s) 247, 4375, 4679, 5311, 5399, 6537, 9194, 10515
HgaI GACGC 9 cut(s) 1723, 2525, 4172, 4394, 6707, 7584, 7682, 8732, 10167
Hin1I GRCGYC 2 cut(s) 4183, 6718
HindIII AAGCTT 7 cut(s) 2054, 3638, 3950, 4055, 4470, 5323, 5971
HpaI GTTAAC 3 cut(s) 519, 2395, 10429
HpaII CCGG 8 cut(s) 247, 4375, 4679, 5311, 5399, 6537, 9194, 10515
Hpy99I CGWCG 7 cut(s) 91, 717, 4410, 4413, 6734, 7323, 7563
HpyCH4IV ACGT 8 cut(s) 2010, 2525, 9005, 9143, 9567, 9665, 9941, 10433
HpySE526I ACGT 8 cut(s) 2010, 2525, 9005, 9143, 9567, 9665, 9941, 10433
Hsp92I GRCGYC 2 cut(s) 4183, 6718
Kpn2I TCCGGA 1 cut(s) 9193
Ksp22I TGATCA 4 cut(s) 981, 8328, 8518, 10000
KspAI GTTAAC 3 cut(s) 519, 2395, 10429
LguI GCTCTTC 4 cut(s) 177, 3842, 6926, 8608
MabI ACCWGGT 2 cut(s) 1409, 6141
MaeII ACGT 8 cut(s) 2010, 2525, 9005, 9143, 9567, 9665, 9941, 10433
MbiI CCGCTC 2 cut(s) 5819, 7768
MfeI CAATTG 3 cut(s) 6884, 7830, 8374
MhlI GDGCHC 6 cut(s) 953, 3005, 3783, 3837, 6204, 10665
MlsI TGGCCA 2 cut(s) 1422, 8936
MluNI TGGCCA 2 cut(s) 1422, 8936
Mox20I TGGCCA 2 cut(s) 1422, 8936
Mph1103I ATGCAT 3 cut(s) 3448, 5646, 8997
MroI TCCGGA 1 cut(s) 9193
MroXI GAANNNNTTC 7 cut(s) 1509, 2982, 4092, 5199, 6636, 7437, 9650
MscI TGGCCA 2 cut(s) 1422, 8936
MslI CAYNNNNRTG 6 cut(s) 447, 903, 1938, 2516, 8313, 10524
Msp20I TGGCCA 2 cut(s) 1422, 8936
MspA1I CMGCKG 6 cut(s) 3275, 4148, 8740, 9365, 9632, 10376
MspCI CTTAAG 4 cut(s) 47, 55, 9929, 9982
MspI CCGG 8 cut(s) 247, 4375, 4679, 5311, 5399, 6537, 9194, 10515
MunI CAATTG 3 cut(s) 6884, 7830, 8374
Mva1269I GAATGC 5 cut(s) 2382, 2482, 3446, 7972, 8498
MvnI CGCG 2 cut(s) 6729, 7662
NciI CCSGG 2 cut(s) 4376, 5312
NcoI CCATGG 6 cut(s) 1044, 1138, 5058, 5493, 8240, 9503
NdeI CATATG 1 cut(s) 5653
NmeAIII GCCGAG 1 cut(s) 6094
NsbI TGCGCA 1 cut(s) 7853
NsiI ATGCAT 3 cut(s) 3448, 5646, 8997
NspV TTCGAA 1 cut(s) 3307
PaeI GCATGC 2 cut(s) 5413, 7724
PaeR7I CTCGAG 3 cut(s) 6860, 8162, 10568
PagI TCATGA 5 cut(s) 3391, 5226, 5929, 8308, 8713
PaqCI CACCTGC 2 cut(s) 3537, 7615
PciI ACATGT 3 cut(s) 4729, 4984, 8691
PciSI GCTCTTC 4 cut(s) 177, 3842, 6926, 8608
PcsI WCGNNNNNNNCGW 1 cut(s) 4180
PctI GAATGC 5 cut(s) 2382, 2482, 3446, 7972, 8498
PdmI GAANNNNTTC 7 cut(s) 1509, 2982, 4092, 5199, 6636, 7437, 9650
Pfl23II CGTACG 1 cut(s) 9666
PflFI GACNNNGTC 1 cut(s) 9862
PflMI CCANNNNNTGG 7 cut(s) 772, 3275, 4178, 4390, 4821, 5441, 7494
PfoI TCCNGGA 4 cut(s) 1878, 3840, 6442, 9429
PinAI ACCGGT 1 cut(s) 10514
Ppu21I YACGTR 2 cut(s) 2526, 9666
PpuMI RGGWCCY 3 cut(s) 1301, 1858, 9199
PscI ACATGT 3 cut(s) 4729, 4984, 8691
PshBI ATTAAT 2 cut(s) 3014, 9735
PsiI TTATAA 2 cut(s) 1614, 6174
Psp1406I AACGTT 1 cut(s) 9143
Psp5II RGGWCCY 3 cut(s) 1301, 1858, 9199
PspEI GGTNACC 3 cut(s) 2308, 3697, 6190
PspFI CCCAGC 6 cut(s) 5615, 6334, 7196, 9183, 9236, 10318
PspLI CGTACG 1 cut(s) 9666
PspPPI RGGWCCY 3 cut(s) 1301, 1858, 9199
PspXI VCTCGAGB 2 cut(s) 6860, 8162
PsrI GAACNNNNNNTAC 4 cut(s) 2157, 2189, 6096, 6128
PstI CTGCAG 2 cut(s) 6067, 7874
PstNI CAGNNNCTG 6 cut(s) 3275, 4148, 8192, 9704, 10087, 10376
PsyI GACNNNGTC 1 cut(s) 9862
PvuII CAGCTG 6 cut(s) 3275, 4148, 8740, 9365, 9632, 10376
RseI CAYNNNNRTG 6 cut(s) 447, 903, 1938, 2516, 8313, 10524
SalI GTCGAC 1 cut(s) 6693
SapI GCTCTTC 4 cut(s) 177, 3842, 6926, 8608
ScaI AGTACT 4 cut(s) 462, 3045, 7470, 9824
SduI GDGCHC 6 cut(s) 953, 3005, 3783, 3837, 6204, 10665
SexAI ACCWGGT 2 cut(s) 1409, 6141
SfcI CTRYAG 6 cut(s) 294, 2952, 4158, 5896, 6063, 7870
Sfr274I CTCGAG 3 cut(s) 6860, 8162, 10568
SfuI TTCGAA 1 cut(s) 3307
SlaI CTCGAG 3 cut(s) 6860, 8162, 10568
SmiMI CAYNNNNRTG 6 cut(s) 447, 903, 1938, 2516, 8313, 10524
SnaBI TACGTA 1 cut(s) 2526
SpeI ACTAGT 1 cut(s) 8663
SphI GCATGC 2 cut(s) 5413, 7724
SspI AATATT 3 cut(s) 1590, 3181, 7776
TaiI ACGT 8 cut(s) 2013, 2528, 9008, 9146, 9570, 9668, 9944, 10436
TaqII GACCGA 3 cut(s) 59, 2841, 5695
TauI GCSGC 6 cut(s) 119, 122, 125, 281, 5660, 5822
TspGWI ACGGA 9 cut(s) 701, 1648, 2138, 2490, 3743, 6170, 7651, 7786, 9042
Tth111I GACNNNGTC 1 cut(s) 9862
Van91I CCANNNNNTGG 7 cut(s) 772, 3275, 4178, 4390, 4821, 5441, 7494
Vha464I CTTAAG 4 cut(s) 47, 55, 9929, 9982
VspI ATTAAT 2 cut(s) 3014, 9735
XagI CCTNNNNNAGG 2 cut(s) 3770, 10655
XbaI TCTAGA 4 cut(s) 4798, 5188, 6281, 7330
XcmI CCANNNNNNNNNTGG 5 cut(s) 1051, 3881, 5570, 6211, 9051
XhoI CTCGAG 3 cut(s) 6860, 8162, 10568
XmaJI CCTAGG 1 cut(s) 8230
XmiI GTMKAC 7 cut(s) 1272, 3130, 4168, 6694, 8674, 9681, 9944
XmnI GAANNNNTTC 7 cut(s) 1509, 2982, 4092, 5199, 6636, 7437, 9650
ZrmI AGTACT 4 cut(s) 462, 3045, 7470, 9824
Zsp2I ATGCAT 3 cut(s) 3448, 5646, 8997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.