Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003867

Physical Location & Seq

Genomic Coordinates Forward (+)

33141703 .. 33145077

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0207800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCGAGTGAGGAAGAAAGCGCGGTGAAGGAGCCTTTGGATCTGATAAGGCTCAGCCTCGACGAGCGCATTTACGTCAAGCTCCGCTCTGACCGTGAGCTCCGCGGTAAACTCCATGCTTATGATCAACATTTAAATATGATTCTTGGTGACGTGGAAGAAATTGTTACCTCTGTGGAAATTGATGATGAAACTTATGAAGAGATTGTCCGGACTACAAAGAGGACAGTTCCATATCTGTTTGTCAGAGGAGACGGTGTCATCCTTGTTTCACCCCCACTAAGGACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009825 GO:0009845 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010154 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0032991 GO:0033554 GO:0033962 GO:0033993 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051049 GO:0051716 GO:0060341 GO:0061458 GO:0065003 GO:0065007 GO:0070925 GO:0071214 GO:0071470 GO:0071472 GO:0071826 GO:0071840 GO:0080001 GO:0090351 GO:0090558 GO:0090626 GO:0097305 GO:0104004 GO:1901700 GO:1903335 GO:1904580 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Laminin_G_3 PH_BEACH WD40

Protein Analysis

97

Amino Acids

11.16

Weight (kDa)

4.78

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	16 - 92	1.7e-18	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03060 AT1G03060 AT1G03060 AT1G03060 AT4G02660 AT4G02660 AT4G02660
fragaria_vesca	FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920
malus_domestica	MD03G1257800.v1.1 MD11G1278500.v1.1
prunus_persica	Prupe.8G234500_v2.0.a1 Prupe.8G234500_v2.0.a1
pyrus_communis	pycom03g20420 pycom11g24600
rosa_chinensis	RchiOBHm_Chr6g0289881
rosa_laevigata	RLG00000012262
rosa_multiflora	Rmu_ssc0000314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177500
rosa_rugosa	Rorug06G0207500 Rorug06G0207600 Rorug06G0207700 Rorug06G0207800 Rorug06G0207900
rosa_samantha	Rh6AG319100 Rh6BG326100 Rh6CG332000 Rh6DG317600
rosa_wichuraiana	Rw6G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	2 cut(s)	23, 105
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	4 cut(s)	23, 85, 103, 105
AclWI	GGATC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	282
AjiI	CACGTC	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	3 cut(s)	82, 100, 290
AluI	AGCT	3 cut(s)	82, 100, 290
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	210
AspLEI	GCGC	2 cut(s)	23, 69
AsuHPI	GGTGA	3 cut(s)	37, 161, 264
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	246
BlpI	GCTNAGC	1 cut(s)	53
BmgBI	CACGTC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	33
Bpu1102I	GCTNAGC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	264
Bsh1236I	CGCG	2 cut(s)	23, 105
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	246
BsmBI	CGTCTC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	40, 124
Bsp1720I	GCTNAGC	1 cut(s)	53
BspACI	CCGC	4 cut(s)	23, 85, 103, 105
BspCNI	CTCAG	1 cut(s)	66
BspEI	TCCGGA	1 cut(s)	210
BspFNI	CGCG	2 cut(s)	23, 105
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	48
BsrBI	CCGCTC	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	40, 124
Bst4CI	ACNGT	3 cut(s)	95, 229, 257
Bst6I	CTCTTC	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	53, 281
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	2 cut(s)	23, 105
BstHHI	GCGC	2 cut(s)	23, 69
BstKTI	GATC	2 cut(s)	43, 127
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	40, 124
BstUI	CGCG	2 cut(s)	23, 105
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	261
CfoI	GCGC	2 cut(s)	23, 69
Cfr42I	CCGCGG	1 cut(s)	106
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	6 cut(s)	34, 52, 57, 82, 100, 290
CviKI_1	RGCY	6 cut(s)	34, 52, 57, 82, 100, 290
DdeI	CTNAG	2 cut(s)	53, 281
DpnI	GATC	2 cut(s)	42, 126
DpnII	GATC	2 cut(s)	40, 124
DraI	TTTAAA	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	1 cut(s)	119
FaiI	YATR	5 cut(s)	117, 123, 140, 198, 235
FalI	AAGNNNNNCTT	1 cut(s)	274
FatI	CATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	124
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	102
GlaI	GCGC	2 cut(s)	22, 68
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	2 cut(s)	23, 69
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	2 cut(s)	21, 67
HinP1I	GCGC	2 cut(s)	21, 67
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	3 cut(s)	37, 161, 264
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	3 cut(s)	45, 91, 248
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	3 cut(s)	95, 229, 257
HpyCH4IV	ACGT	2 cut(s)	75, 153
HpyF3I	CTNAG	2 cut(s)	53, 281
HpySE526I	ACGT	2 cut(s)	75, 153
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	2 cut(s)	21, 67
Kpn2I	TCCGGA	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	124
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	40, 124
LmnI	GCTCC	3 cut(s)	31, 87, 105
LpnPI	CCDG	1 cut(s)	224
MaeII	ACGT	2 cut(s)	75, 153
MaeIII	GTNAC	2 cut(s)	149, 166
MalI	GATC	2 cut(s)	42, 126
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	2 cut(s)	40, 124
MboII	GAAGA	3 cut(s)	26, 170, 212
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	2 cut(s)	162, 180
MnlI	CCTC	5 cut(s)	4, 68, 181, 216, 242
MroI	TCCGGA	1 cut(s)	210
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	1 cut(s)	211
MvnI	CGCG	2 cut(s)	23, 105
NdeII	GATC	2 cut(s)	40, 124
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	142
PflFI	GACNNNGTC	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	102
SacII	CCGCGG	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	40, 124
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	6 cut(s)	78, 84, 102, 156, 173, 292
Sfr303I	CCGCGG	1 cut(s)	106
SgrBI	CCGCGG	1 cut(s)	106
SmiI	ATTTAAAT	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	162, 180
SsiI	CCGC	4 cut(s)	23, 85, 103, 105
SstI	GAGCTC	1 cut(s)	102
SwaI	ATTTAAAT	1 cut(s)	135
TaaI	ACNGT	3 cut(s)	95, 229, 257
TaiI	ACGT	2 cut(s)	78, 156
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	162, 180
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	204, 213
Tth111I	GACNNNGTC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.