domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G03060 AT1G03060 AT1G03060 AT1G03060 AT4G02660 AT4G02660 AT4G02660 |
| fragaria_vesca | FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 |
| malus_domestica | MD03G1257800.v1.1 MD11G1278500.v1.1 |
| prunus_persica | Prupe.8G234500_v2.0.a1 Prupe.8G234500_v2.0.a1 |
| pyrus_communis | pycom03g20420 pycom11g24600 |
| rosa_chinensis | RchiOBHm_Chr6g0289881 |
| rosa_laevigata | RLG00000012262 |
| rosa_multiflora | Rmu_ssc0000314.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00177500 |
| rosa_rugosa | Rorug06G0207500 Rorug06G0207600 Rorug06G0207700 Rorug06G0207800 Rorug06G0207900 |
| rosa_samantha | Rh6AG319100 Rh6BG326100 Rh6CG332000 Rh6DG317600 |
| rosa_wichuraiana | Rw6G027520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3612 |
| AarI | CACCTGC | 2 cut(s) | 975, 5053 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 5717 |
| Acc16I | TGCGCA | 1 cut(s) | 5294 |
| Acc36I | ACCTGC | 4 cut(s) | 975, 1123, 5053, 7222 |
| AccB7I | CCANNNNNTGG | 6 cut(s) | 713, 1616, 1828, 2259, 2879, 4932 |
| AccBSI | CCGCTC | 2 cut(s) | 3257, 5206 |
| AccI | GTMKAC | 5 cut(s) | 568, 1606, 4132, 6115, 7122 |
| AccII | CGCG | 2 cut(s) | 4167, 5100 |
| AccIII | TCCGGA | 2 cut(s) | 846, 6634 |
| AciI | CCGC | 7 cut(s) | 1326, 1583, 3095, 3257, 5206, 8169, 8181 |
| AcoI | YGGCCR | 1 cut(s) | 6375 |
| AcuI | CTGAAG | 5 cut(s) | 2013, 2312, 3893, 4467, 4908 |
| AcyI | GRCGYC | 2 cut(s) | 1621, 4156 |
| AdeI | CACNNNGTG | 2 cut(s) | 7625, 8101 |
| AfeI | AGCGCT | 1 cut(s) | 5309 |
| AflII | CTTAAG | 3 cut(s) | 455, 7370, 7423 |
| AflIII | ACRYGT | 7 cut(s) | 2167, 2422, 6132, 6444, 7104, 7646, 7872 |
| AgeI | ACCGGT | 1 cut(s) | 7955 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3874 |
| AhlI | ACTAGT | 1 cut(s) | 6104 |
| AjiI | CACGTC | 1 cut(s) | 7875 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 6878, 6910 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1177, 1209 |
| Alw21I | GWGCWC | 3 cut(s) | 579, 1221, 8106 |
| Alw44I | GTGCAC | 1 cut(s) | 575 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 713, 1586, 4810, 7145, 7528 |
| Ama87I | CYCGRG | 4 cut(s) | 2748, 4298, 5603, 8009 |
| Aor13HI | TCCGGA | 2 cut(s) | 846, 6634 |
| Aor51HI | AGCGCT | 1 cut(s) | 5309 |
| ApaLI | GTGCAC | 1 cut(s) | 575 |
| AseI | ATTAAT | 1 cut(s) | 7176 |
| AsiGI | ACCGGT | 1 cut(s) | 7955 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 420, 1530, 2637, 4074, 4875, 7091 |
| AspLEI | GCGC | 9 cut(s) | 631, 2292, 2866, 4167, 4265, 5100, 5295, 5310, 7765 |
| AsuC2I | CCSGG | 6 cut(s) | 820, 1679, 1814, 2749, 2750, 3420 |
| AvaI | CYCGRG | 4 cut(s) | 2748, 4298, 5603, 8009 |
| AvaII | GGWCC | 8 cut(s) | 362, 791, 1189, 3962, 4209, 5279, 6640, 8089 |
| AxyI | CCTNAGG | 1 cut(s) | 1225 |
| BaeGI | GKGCMC | 2 cut(s) | 579, 7630 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 5803, 5836 |
| BalI | TGGCCA | 1 cut(s) | 6377 |
| BanII | GRGCYC | 2 cut(s) | 1275, 3642 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 6158, 6190 |
| BauI | CACGAG | 3 cut(s) | 354, 7466, 7587 |
| BbsI | GAAGAC | 6 cut(s) | 1616, 2160, 2595, 4473, 7299, 7643 |
| Bbv12I | GWGCWC | 3 cut(s) | 579, 1221, 8106 |
| BbvCI | CCTCAGC | 1 cut(s) | 7074 |
| BceAI | ACGGC | 2 cut(s) | 3465, 7827 |
| BciVI | GTATCC | 4 cut(s) | 1811, 4639, 5023, 7930 |
| BclI | TGATCA | 2 cut(s) | 5769, 7441 |
| BcnI | CCSGG | 6 cut(s) | 820, 1679, 1814, 2749, 2750, 3420 |
| BcuI | ACTAGT | 1 cut(s) | 6104 |
| BfmI | CTRYAG | 4 cut(s) | 390, 3334, 3501, 5311 |
| BfoI | RGCGCY | 3 cut(s) | 4266, 5311, 7766 |
| BfrI | CTTAAG | 3 cut(s) | 455, 7370, 7423 |
| BfuAI | ACCTGC | 4 cut(s) | 975, 1123, 5053, 7222 |
| BfuI | GTATCC | 4 cut(s) | 1811, 4639, 5023, 7930 |
| BglII | AGATCT | 5 cut(s) | 1288, 4774, 5044, 5663, 7036 |
| BlpI | GCTNAGC | 1 cut(s) | 2957 |
| BmcAI | AGTACT | 3 cut(s) | 483, 4908, 7265 |
| Bme18I | GGWCC | 8 cut(s) | 362, 791, 1189, 3962, 4209, 5279, 6640, 8089 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3874 |
| BmeT110I | CYCGRG | 4 cut(s) | 2748, 4298, 5603, 8009 |
| BmgBI | CACGTC | 1 cut(s) | 7875 |
| BmiI | GGNNCC | 8 cut(s) | 364, 1516, 3126, 3639, 3979, 5787, 6642, 7248 |
| BmrI | ACTGGG | 2 cut(s) | 5065, 7545 |
| BmuI | ACTGGG | 2 cut(s) | 5065, 7545 |
| BpiI | GAAGAC | 6 cut(s) | 1616, 2160, 2595, 4473, 7299, 7643 |
| BpmI | CTGGAG | 8 cut(s) | 488, 690, 1134, 2187, 2552, 3580, 3656, 3996 |
| Bpu10I | CCTNAGC | 3 cut(s) | 3882, 4513, 7074 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2957 |
| BpuMI | CCSGG | 6 cut(s) | 820, 1679, 1814, 2749, 2750, 3420 |
| Bsa29I | ATCGAT | 4 cut(s) | 54, 5248, 5904, 5958 |
| BsaAI | YACGTR | 2 cut(s) | 1642, 7107 |
| BsaBI | GATNNNNATC | 2 cut(s) | 4200, 7446 |
| BsaHI | GRCGYC | 2 cut(s) | 1621, 4156 |
| BsaI | GGTCTC | 3 cut(s) | 1555, 4789, 5682 |
| BsaWI | WCCGGW | 3 cut(s) | 846, 6634, 7955 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 3724, 3754, 6906, 6936, 7558, 7588 |
| Bse118I | RCCGGY | 1 cut(s) | 7955 |
| Bse21I | CCTNAGG | 1 cut(s) | 1225 |
| Bse3DI | GCAATG | 6 cut(s) | 1658, 1877, 5112, 7155, 7869, 8044 |
| Bse8I | GATNNNNATC | 2 cut(s) | 4200, 7446 |
| BseAI | TCCGGA | 2 cut(s) | 846, 6634 |
| BseCI | ATCGAT | 4 cut(s) | 54, 5248, 5904, 5958 |
| BseJI | GATNNNNATC | 2 cut(s) | 4200, 7446 |
| BseMI | GCAATG | 6 cut(s) | 1658, 1877, 5112, 7155, 7869, 8044 |
| BseRI | GAGGAG | 2 cut(s) | 1226, 4679 |
| BseSI | GKGCMC | 2 cut(s) | 579, 7630 |
| BseYI | CCCAGC | 6 cut(s) | 3053, 3507, 3772, 4634, 6624, 6677 |
| BsgI | GTGCAG | 8 cut(s) | 885, 1542, 4570, 4733, 5583, 6741, 6822, 7684 |
| Bsh1236I | CGCG | 2 cut(s) | 4167, 5100 |
| Bsh1285I | CGRYCG | 3 cut(s) | 54, 293, 1683 |
| BshTI | ACCGGT | 1 cut(s) | 7955 |
| BshVI | ATCGAT | 4 cut(s) | 54, 5248, 5904, 5958 |
| BsiEI | CGRYCG | 3 cut(s) | 54, 293, 1683 |
| BsiHKAI | GWGCWC | 3 cut(s) | 579, 1221, 8106 |
| BsiHKCI | CYCGRG | 4 cut(s) | 2748, 4298, 5603, 8009 |
| BsiWI | CGTACG | 1 cut(s) | 7107 |
| BslFI | GGGAC | 8 cut(s) | 348, 1159, 1289, 1745, 3484, 4617, 6626, 7865 |
| BsmBI | CGTCTC | 3 cut(s) | 4163, 7591, 7881 |
| BsmFI | GGGAC | 8 cut(s) | 348, 1159, 1289, 1745, 3484, 4617, 6626, 7865 |
| BsmI | GAATGC | 3 cut(s) | 884, 5413, 5939 |
| Bso31I | GGTCTC | 3 cut(s) | 1555, 4789, 5682 |
| BsoBI | CYCGRG | 4 cut(s) | 2748, 4298, 5603, 8009 |
| Bsp1286I | GDGCHC | 6 cut(s) | 579, 1221, 1275, 3642, 7630, 8106 |
| Bsp13I | TCCGGA | 2 cut(s) | 846, 6634 |
| Bsp1407I | TGTACA | 4 cut(s) | 1006, 1245, 3541, 5653 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2957 |
| Bsp19I | CCATGG | 5 cut(s) | 2496, 2931, 5681, 6494, 6944 |
| BspACI | CCGC | 7 cut(s) | 1326, 1583, 3095, 3257, 5206, 8169, 8181 |
| BspDI | ATCGAT | 4 cut(s) | 54, 5248, 5904, 5958 |
| BspEI | TCCGGA | 2 cut(s) | 846, 6634 |
| BspFNI | CGCG | 2 cut(s) | 4167, 5100 |
| BspHI | TCATGA | 5 cut(s) | 829, 2664, 3367, 5749, 6154 |
| BspLI | GGNNCC | 8 cut(s) | 364, 1516, 3126, 3639, 3979, 5787, 6642, 7248 |
| BspMAI | CTGCAG | 1 cut(s) | 5315 |
| BspMI | ACCTGC | 4 cut(s) | 975, 1123, 5053, 7222 |
| BspQI | GCTCTTC | 5 cut(s) | 1280, 1776, 3302, 4364, 6049 |
| BspTI | CTTAAG | 3 cut(s) | 455, 7370, 7423 |
| BspTNI | GGTCTC | 3 cut(s) | 1555, 4789, 5682 |
| BsrBI | CCGCTC | 2 cut(s) | 3257, 5206 |
| BsrDI | GCAATG | 6 cut(s) | 1658, 1877, 5112, 7155, 7869, 8044 |
| BsrFI | RCCGGY | 1 cut(s) | 7955 |
| BsrGI | TGTACA | 4 cut(s) | 1006, 1245, 3541, 5653 |
| BssAI | RCCGGY | 1 cut(s) | 7955 |
| BssNAI | GTATAC | 2 cut(s) | 569, 1607 |
| BssNI | GRCGYC | 2 cut(s) | 1621, 4156 |
| BssSI | CACGAG | 3 cut(s) | 354, 7466, 7587 |
| Bst1107I | GTATAC | 2 cut(s) | 569, 1607 |
| Bst2BI | CACGAG | 3 cut(s) | 354, 7466, 7587 |
| BstACI | GRCGYC | 2 cut(s) | 1621, 4156 |
| BstAFI | CTTAAG | 3 cut(s) | 455, 7370, 7423 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 890, 945, 7625 |
| BstAUI | TGTACA | 4 cut(s) | 1006, 1245, 3541, 5653 |
| BstBAI | YACGTR | 2 cut(s) | 1642, 7107 |
| BstDSI | CCRYGG | 5 cut(s) | 2496, 2931, 5681, 6494, 6944 |
| BstEII | GGTNACC | 2 cut(s) | 1135, 3628 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1208, 8096 |
| BstFNI | CGCG | 2 cut(s) | 4167, 5100 |
| BstH2I | RGCGCY | 3 cut(s) | 4266, 5311, 7766 |
| BstHHI | GCGC | 9 cut(s) | 631, 2292, 2866, 4167, 4265, 5100, 5295, 5310, 7765 |
| BstMCI | CGRYCG | 3 cut(s) | 54, 293, 1683 |
| BstPI | GGTNACC | 2 cut(s) | 1135, 3628 |
| BstSFI | CTRYAG | 4 cut(s) | 390, 3334, 3501, 5311 |
| BstSLI | GKGCMC | 2 cut(s) | 579, 7630 |
| BstSNI | TACGTA | 1 cut(s) | 1642 |
| BstUI | CGCG | 2 cut(s) | 4167, 5100 |
| BstV2I | GAAGAC | 6 cut(s) | 1616, 2160, 2595, 4473, 7299, 7643 |
| BstX2I | RGATCY | 9 cut(s) | 1288, 2036, 4774, 5044, 5663, 6538, 7036, 7141, 7717 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1319, 4642 |
| BstYI | RGATCY | 9 cut(s) | 1288, 2036, 4774, 5044, 5663, 6538, 7036, 7141, 7717 |
| BstZ17I | GTATAC | 2 cut(s) | 569, 1607 |
| Bsu15I | ATCGAT | 4 cut(s) | 54, 5248, 5904, 5958 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1225 |
| BsuI | GTATCC | 4 cut(s) | 1811, 4639, 5023, 7930 |
| BsuTUI | ATCGAT | 4 cut(s) | 54, 5248, 5904, 5958 |
| BtgI | CCRYGG | 5 cut(s) | 2496, 2931, 5681, 6494, 6944 |
| BtgZI | GCGATG | 2 cut(s) | 4182, 5115 |
| BtrI | CACGTC | 1 cut(s) | 7875 |
| BtsI | GCAGTG | 5 cut(s) | 1438, 2591, 3981, 4922, 6964 |
| BveI | ACCTGC | 4 cut(s) | 975, 1123, 5053, 7222 |
| CaiI | CAGNNNCTG | 5 cut(s) | 713, 1586, 4810, 7145, 7528 |
| CciI | TCATGA | 5 cut(s) | 829, 2664, 3367, 5749, 6154 |
| CfoI | GCGC | 9 cut(s) | 631, 2292, 2866, 4167, 4265, 5100, 5295, 5310, 7765 |
| Cfr10I | RCCGGY | 1 cut(s) | 7955 |
| Cfr9I | CCCGGG | 1 cut(s) | 2748 |
| ClaI | ATCGAT | 4 cut(s) | 54, 5248, 5904, 5958 |
| CseI | GACGC | 6 cut(s) | 1610, 1832, 4145, 5120, 6173, 7608 |
| CsiI | ACCWGGT | 1 cut(s) | 3579 |
| CspAI | ACCGGT | 1 cut(s) | 7955 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2445, 2480 |
| DraI | TTTAAA | 2 cut(s) | 5506, 8055 |
| DraIII | CACNNNGTG | 2 cut(s) | 7625, 8101 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 5717 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3874 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 5717 |
| EaeI | YGGCCR | 1 cut(s) | 6375 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3874 |
| Eco105I | TACGTA | 1 cut(s) | 1642 |
| Eco24I | GRGCYC | 2 cut(s) | 1275, 3642 |
| Eco31I | GGTCTC | 3 cut(s) | 1555, 4789, 5682 |
| Eco32I | GATATC | 1 cut(s) | 4582 |
| Eco47I | GGWCC | 8 cut(s) | 362, 791, 1189, 3962, 4209, 5279, 6640, 8089 |
| Eco47III | AGCGCT | 1 cut(s) | 5309 |
| Eco57I | CTGAAG | 5 cut(s) | 2013, 2312, 3893, 4467, 4908 |
| Eco81I | CCTNAGG | 1 cut(s) | 1225 |
| Eco88I | CYCGRG | 4 cut(s) | 2748, 4298, 5603, 8009 |
| Eco91I | GGTNACC | 2 cut(s) | 1135, 3628 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1208, 8096 |
| EcoO109I | RGGNCCY | 2 cut(s) | 6640, 6991 |
| EcoO65I | GGTNACC | 2 cut(s) | 1135, 3628 |
| EcoRI | GAATTC | 3 cut(s) | 6602, 6866, 6968 |
| EcoRV | GATATC | 1 cut(s) | 4582 |
| EcoT22I | ATGCAT | 3 cut(s) | 886, 3084, 6438 |
| EcoT38I | GRGCYC | 2 cut(s) | 1275, 3642 |
| Esp3I | CGTCTC | 3 cut(s) | 4163, 7591, 7881 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2562, 2594, 7651, 7683 |
| FaqI | GGGAC | 8 cut(s) | 348, 1159, 1289, 1745, 3484, 4617, 6626, 7865 |
| FauI | CCCGC | 3 cut(s) | 5199, 8162, 8174 |
| FauNDI | CATATG | 1 cut(s) | 3091 |
| FbaI | TGATCA | 2 cut(s) | 5769, 7441 |
| FblI | GTMKAC | 5 cut(s) | 568, 1606, 4132, 6115, 7122 |
| FriOI | GRGCYC | 2 cut(s) | 1275, 3642 |
| FspI | TGCGCA | 1 cut(s) | 5294 |
| GlaI | GCGC | 9 cut(s) | 630, 2291, 2865, 4166, 4264, 5099, 5294, 5309, 7764 |
| GsaI | CCCAGC | 6 cut(s) | 3057, 3511, 3776, 4638, 6628, 6681 |
| GsuI | CTGGAG | 8 cut(s) | 488, 690, 1134, 2187, 2552, 3580, 3656, 3996 |
| HaeII | RGCGCY | 3 cut(s) | 4266, 5311, 7766 |
| HgaI | GACGC | 6 cut(s) | 1610, 1832, 4145, 5120, 6173, 7608 |
| HhaI | GCGC | 9 cut(s) | 631, 2292, 2866, 4167, 4265, 5100, 5295, 5310, 7765 |
| Hin1I | GRCGYC | 2 cut(s) | 1621, 4156 |
| Hin6I | GCGC | 9 cut(s) | 629, 2290, 2864, 4165, 4263, 5098, 5293, 5308, 7763 |
| HinP1I | GCGC | 9 cut(s) | 629, 2290, 2864, 4165, 4263, 5098, 5293, 5308, 7763 |
| HincII | GTYRAC | 6 cut(s) | 3577, 6012, 7237, 7333, 7870, 8031 |
| HindII | GTYRAC | 6 cut(s) | 3577, 6012, 7237, 7333, 7870, 8031 |
| HindIII | AAGCTT | 6 cut(s) | 1076, 1388, 1493, 1908, 2761, 3409 |
| HpaI | GTTAAC | 1 cut(s) | 7870 |
| Hpy99I | CGWCG | 4 cut(s) | 1848, 1851, 4761, 5001 |
| HpyCH4IV | ACGT | 6 cut(s) | 1641, 6446, 7008, 7106, 7382, 7874 |
| HpySE526I | ACGT | 6 cut(s) | 1641, 6446, 7008, 7106, 7382, 7874 |
| Hsp92I | GRCGYC | 2 cut(s) | 1621, 4156 |
| HspAI | GCGC | 9 cut(s) | 629, 2290, 2864, 4165, 4263, 5098, 5293, 5308, 7763 |
| Kpn2I | TCCGGA | 2 cut(s) | 846, 6634 |
| Ksp22I | TGATCA | 2 cut(s) | 5769, 7441 |
| KspAI | GTTAAC | 1 cut(s) | 7870 |
| LguI | GCTCTTC | 5 cut(s) | 1280, 1776, 3302, 4364, 6049 |
| MabI | ACCWGGT | 1 cut(s) | 3579 |
| MaeII | ACGT | 6 cut(s) | 1641, 6446, 7008, 7106, 7382, 7874 |
| MbiI | CCGCTC | 2 cut(s) | 3257, 5206 |
| MfeI | CAATTG | 3 cut(s) | 4322, 5271, 5815 |
| MflI | RGATCY | 9 cut(s) | 1288, 2036, 4774, 5044, 5663, 6538, 7036, 7141, 7717 |
| MhlI | GDGCHC | 6 cut(s) | 579, 1221, 1275, 3642, 7630, 8106 |
| MlsI | TGGCCA | 1 cut(s) | 6377 |
| MluNI | TGGCCA | 1 cut(s) | 6377 |
| MmeI | TCCRAC | 8 cut(s) | 2014, 2157, 2895, 3385, 4575, 6288, 6863, 7590 |
| Mox20I | TGGCCA | 1 cut(s) | 6377 |
| Mph1103I | ATGCAT | 3 cut(s) | 886, 3084, 6438 |
| MroI | TCCGGA | 2 cut(s) | 846, 6634 |
| MroXI | GAANNNNTTC | 6 cut(s) | 420, 1530, 2637, 4074, 4875, 7091 |
| MscI | TGGCCA | 1 cut(s) | 6377 |
| MslI | CAYNNNNRTG | 2 cut(s) | 5754, 7965 |
| Msp20I | TGGCCA | 1 cut(s) | 6377 |
| MspA1I | CMGCKG | 6 cut(s) | 713, 1583, 6181, 6806, 7073, 7817 |
| MspCI | CTTAAG | 3 cut(s) | 455, 7370, 7423 |
| MunI | CAATTG | 3 cut(s) | 4322, 5271, 5815 |
| Mva1269I | GAATGC | 3 cut(s) | 884, 5413, 5939 |
| MvnI | CGCG | 2 cut(s) | 4167, 5100 |
| NciI | CCSGG | 6 cut(s) | 820, 1679, 1814, 2749, 2750, 3420 |
| NcoI | CCATGG | 5 cut(s) | 2496, 2931, 5681, 6494, 6944 |
| NdeI | CATATG | 1 cut(s) | 3091 |
| NlaIV | GGNNCC | 8 cut(s) | 364, 1516, 3126, 3639, 3979, 5787, 6642, 7248 |
| NsbI | TGCGCA | 1 cut(s) | 5294 |
| NsiI | ATGCAT | 3 cut(s) | 886, 3084, 6438 |
| PaeR7I | CTCGAG | 3 cut(s) | 4298, 5603, 8009 |
| PagI | TCATGA | 5 cut(s) | 829, 2664, 3367, 5749, 6154 |
| PaqCI | CACCTGC | 2 cut(s) | 975, 5053 |
| PciI | ACATGT | 4 cut(s) | 2167, 2422, 6132, 7646 |
| PciSI | GCTCTTC | 5 cut(s) | 1280, 1776, 3302, 4364, 6049 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1618 |
| PctI | GAATGC | 3 cut(s) | 884, 5413, 5939 |
| PdmI | GAANNNNTTC | 6 cut(s) | 420, 1530, 2637, 4074, 4875, 7091 |
| Pfl23II | CGTACG | 1 cut(s) | 7107 |
| PflFI | GACNNNGTC | 1 cut(s) | 7303 |
| PflMI | CCANNNNNTGG | 6 cut(s) | 713, 1616, 1828, 2259, 2879, 4932 |
| PfoI | TCCNGGA | 2 cut(s) | 1278, 6870 |
| PinAI | ACCGGT | 1 cut(s) | 7955 |
| Ple19I | CGATCG | 1 cut(s) | 54 |
| Ppu21I | YACGTR | 2 cut(s) | 1642, 7107 |
| PpuMI | RGGWCCY | 1 cut(s) | 6640 |
| PscI | ACATGT | 4 cut(s) | 2167, 2422, 6132, 7646 |
| PshBI | ATTAAT | 1 cut(s) | 7176 |
| PsiI | TTATAA | 1 cut(s) | 3612 |
| Psp5II | RGGWCCY | 1 cut(s) | 6640 |
| PspEI | GGTNACC | 2 cut(s) | 1135, 3628 |
| PspFI | CCCAGC | 6 cut(s) | 3053, 3507, 3772, 4634, 6624, 6677 |
| PspLI | CGTACG | 1 cut(s) | 7107 |
| PspN4I | GGNNCC | 8 cut(s) | 364, 1516, 3126, 3639, 3979, 5787, 6642, 7248 |
| PspPPI | RGGWCCY | 1 cut(s) | 6640 |
| PspXI | VCTCGAGB | 2 cut(s) | 4298, 5603 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3534, 3566 |
| PstI | CTGCAG | 1 cut(s) | 5315 |
| PstNI | CAGNNNCTG | 5 cut(s) | 713, 1586, 4810, 7145, 7528 |
| PsuI | RGATCY | 9 cut(s) | 1288, 2036, 4774, 5044, 5663, 6538, 7036, 7141, 7717 |
| PsyI | GACNNNGTC | 1 cut(s) | 7303 |
| PvuI | CGATCG | 1 cut(s) | 54 |
| PvuII | CAGCTG | 5 cut(s) | 713, 6181, 6806, 7073, 7817 |
| RseI | CAYNNNNRTG | 2 cut(s) | 5754, 7965 |
| SapI | GCTCTTC | 5 cut(s) | 1280, 1776, 3302, 4364, 6049 |
| ScaI | AGTACT | 3 cut(s) | 483, 4908, 7265 |
| SduI | GDGCHC | 6 cut(s) | 579, 1221, 1275, 3642, 7630, 8106 |
| SexAI | ACCWGGT | 1 cut(s) | 3579 |
| SfcI | CTRYAG | 4 cut(s) | 390, 3334, 3501, 5311 |
| Sfr274I | CTCGAG | 3 cut(s) | 4298, 5603, 8009 |
| SinI | GGWCC | 8 cut(s) | 362, 791, 1189, 3962, 4209, 5279, 6640, 8089 |
| SlaI | CTCGAG | 3 cut(s) | 4298, 5603, 8009 |
| SmaI | CCCGGG | 1 cut(s) | 2750 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 5754, 7965 |
| SnaBI | TACGTA | 1 cut(s) | 1642 |
| SpeI | ACTAGT | 1 cut(s) | 6104 |
| SsiI | CCGC | 7 cut(s) | 1326, 1583, 3095, 3257, 5206, 8169, 8181 |
| SspI | AATATT | 2 cut(s) | 619, 5214 |
| TaiI | ACGT | 6 cut(s) | 1644, 6449, 7011, 7109, 7385, 7877 |
| TaqII | GACCGA | 2 cut(s) | 279, 3133 |
| TauI | GCSGC | 3 cut(s) | 1586, 3098, 3260 |
| TspGWI | ACGGA | 3 cut(s) | 1181, 4682, 5089 |
| TspMI | CCCGGG | 1 cut(s) | 2748 |
| Tth111I | GACNNNGTC | 1 cut(s) | 7303 |
| Van91I | CCANNNNNTGG | 6 cut(s) | 713, 1616, 1828, 2259, 2879, 4932 |
| Vha464I | CTTAAG | 3 cut(s) | 455, 7370, 7423 |
| VneI | GTGCAC | 1 cut(s) | 575 |
| VpaK11BI | GGWCC | 8 cut(s) | 362, 791, 1189, 3962, 4209, 5279, 6640, 8089 |
| VspI | ATTAAT | 1 cut(s) | 7176 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1208, 8096 |
| XbaI | TCTAGA | 4 cut(s) | 2236, 2626, 3719, 4768 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1319, 3008, 3649, 6492 |
| XhoI | CTCGAG | 3 cut(s) | 4298, 5603, 8009 |
| XmaI | CCCGGG | 1 cut(s) | 2748 |
| XmiI | GTMKAC | 5 cut(s) | 568, 1606, 4132, 6115, 7122 |
| XmnI | GAANNNNTTC | 6 cut(s) | 420, 1530, 2637, 4074, 4875, 7091 |
| ZrmI | AGTACT | 3 cut(s) | 483, 4908, 7265 |
| Zsp2I | ATGCAT | 3 cut(s) | 886, 3084, 6438 |