MD11G1278500.v1.1

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003867
Physical Location & Seq
Reverse (-)
39555647 .. 39572191
16545 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1278500.v1.1.491

Sequence Viewer

Length: 10785 bp
ATGAAATGGGGAGCATTGCTTAAGGACTTAAGGGAGAAGGTCGGTTTCACTCAATCGCCGTCGTCTTCTTTATCTGCTTCTGCTGCCGCCGCCGCCGCTTCTTCGTCATCGTCGCCGGCTCTCTCTGCCAATAACAATGCTAATTCAGCTCTTCACGGCTCGTATTCTCCTTCAGGAGACAAACATGAATTGGAATTGGACTTCAAGAGATTTTGGGAAGAGTTCCGGACATCCAGCTCTGAAAAGGAGAAAGAAGCGGCCTTGAATTTAACTGTAGATATCTTTTGTAGATTAGTAAGGCAACATGCAAATGTAGCTCAATTAGTTACCATGTTAGTTGAAACACATATATTCTCATTTGTCCTGGGAAGGGCATTTGTAACAGATATTGAGAAGCTAAAAATCAGCAGCAGAAAAAGATATTTGGATGTAGAAAAAGTACTGACGTTTTTTTCAGAAGTCACAAAGGATGGCATCAGTCCTGGTTCAAATTTGTTAACTGCTTTACAAGTGCTAGCTTCTGCGCCTATTGATAAACAATCTCTCCTTGATTCGGGCATATTGTGCTGTCTCATTCATATTCTCAATGCCCTTCTGGATCCTGATGAAGCCAATCAGAAGCAAAAGGCTACTGATCATGATGAACTACTTTCAACTGAGAAAGATTATGACGGTGTTGCCGGCCAAGTCCATCGGCTTGAGGTAGAGGGGAGTGTTGTGCATATTATGAAAGCACTGGCAAACCATCCTTTGGCAGCACAAAGTTTGATTGAGGATGATTCTCTTCAGTTGCTCTTTCAGATGGTTGCGAATGGCTCTTTGACAGTCTTCTCTAGATACAACGAGGGCCTGGTTCTGCTGCACAGCATTCAGCTTCATAGACATGCTATGCAGATTCTTGGTCTTCTTTTGGTCAATGACAATGGGAGCACTGCAAACTATATTCGCAAACATCATCTGATTAAAGTTCTTTTAATGGCTGTCAAAGATTTCAATCCTGATTGCGGTGATTCTACATATACCATGGGCATTGTGGATTTGCTGCTTGAATGTGTTGAATTGTCATATAGACCTGATGCTGGTGGTGTCAGGCTTAGGGAGGATATACATAATGCCCATGGTTATCAGTTCCTTGTTCAGTTTGCTTTAATTCTTTCCTCAATGTCTGAAAGTCAGGGGTTCCATTCTGTTCAGTATAAATTTTCAGACAAAAATTCTGCATCAGGCGGTTCCCATGCACAGGATGTTGTAGACATTCAGGATTCCATGGGAGAAAAGGGACCCTTAGATGAACAACTTTCTCCCACACTGTCTAGGTTGCTTGATGTTCTTGTTAATCTAGCTCAAACTGGCCCAACCGAACCAAAAGTTTCCAAGTCTTCCCATACCAGGTCCAGTGGCCATAGCAGAAGTCGTACACCATCTTCAGATAGATTGGCTGATGAAGTTTGGGAAAAGGACAATAATAAAGTCAAAGACCTTGAAGCAGTTCAGATGTTGCAGGACATTTTCCTCAAAGCAGAAAGCAGGGAGTTGCAAGCAGAAGTTCTGAATAGAATGTTCAAAATATTTTCAAGTCATCTTGAAAATTACAAGTTGTGCCAGCAGTTACGGACTGTTCCACTTTTCATCCTAAATATGGCTGGTTTTCCTCCATCTTTACAAGAGATACTGCTAAAAATTCTTGAGTATGCCGTGACTGTTGTAAACTGCGTCCCTGAGCAAGAGTTACTGTCACTTTGTTGCTTGTTGCAGCAACCAATATCATCAGACTTAAAGCACACTGTACTTTCTTTTTTTGTAAAACTTCTATCTTTTGACCAGCAGTACAAAAAGGTCCTCCGAGAAGTTGGTGTCCTGGAGGTTTTGTTGGATGACCTGAAGCAGCACAAGTTGCTTTTGGGTTCAGAGCATCAAAGTGCCAATACTAATCAGTTGGAGATAAATTCTGGTTCAAGCAGCTTTAAAAAGCACTTGGACAGCAAGGATGTAATTATTTCATCACCCAAACTAATGGAATCTGGTTCAGGGAAGCTTCCTATATTTGAAGTTGATGGTACAATTACTATAGCGTGGGATTGTATGGTCTCTTTATTAAAGAAAACTGAAACCAACCAATCGTCTTTCCGTGTGGCTAATGGTGTAACTACTGTTCTTCCGTTTCTTGTGTCTGACACACACCGAGCAGGGGTGCTTAGGGTATTGTCATGTTTGATCATTGAAGATGGTACCCAGGCACATCCTGAAGAATTAGGTGTGATTGTTGAAATTCTAAAAAGTGGAATGGTTACCAGTGTTACGGGATCTCAATACAGGCTTCAAAATGATGCAAAATGTGACACTATGGGGGCTTTGTGGCGCATTCTGGGAGTTAGTAACTCAGCTCAGAGGGTTTTTGGTGAAGCCACTGGTTTTTCTATTCTTCTTACCACACTCCATAGTTTCCAAAGTGAAGGGGAGCATTCAGATCAATCTTCTTTAGAGGTTTACATCAAGGTGTTTACGTATTTGTTGCGTCTAGTGACTGCTGGGGTGTGTGGTAATGCTGTTAATAGGACAAAATTGCACACAATTATATCATCCCAAACTTTCTATGATCTTCTATCCGAGTCAGGCTTACTTGGTGTGGACTGTGAAAAGCAAGTCATACAATTATTGTTTGAACTAGCTCTTGAAATTGTGCTTCCACCGTTCTTAACATCAGAAAGTGTTACATCGTCGGATGTGCTTGATAATGAGTCTTCAAGTTTTTCAATAATGACTACATCAGGTTCATTTCATCCTGATAAGGAACGGGTGTTCAACGCTGGTGCTGTCAGAGTTCTTATTCGGTCGTTACTGCTTTTTACTCCAAAGATGCAGCTTGAAGTGCTTAACCTTATTGAAAGGCTTGCTCATGCTGGTCCCTTCAACCAGGAAAACCTCACCTCTATAGGTTGCATTGAACTTCTGCTGGAAACCATTCACCCATTCCTTTTGGGCTCATCTCCATTCCTTAAGCATGCTCTGGAGATTGTGGAAGTTCTTGGGGCATACAGGTTATCTGCATCAGAACTTCGAATGCTTATTCGATATGTGTTGCAAATGAGGTCAATGAAGTCAGGTCGTATACTTGTTGACATGATGGAAAGGTTAATTCTCATGGAGGATTCAGAAAATATTTCCCTCGCACCATTTGTAGAGATGGACATGAGCAAGATTGGTCATGCTTCCATTCAGGTTTCTCTGGGAGAAAGATCATGGCCTCCAGCAGCTGGTTATTCATTTGTCTGTTGGTTTCAGTTTCAGAATCTGTTGAAGTTGCAAACAAAAGAAACTGAGTCCAAAGCTGGTTCTTCTAAAAAGTGGAGCAGTTCTGCCGGGCAACATCATGAGCGGCATATTCTCCGGATATTTTCTGTTGGTGCTGCAAATAATGGAAATGCATTCTATGCAGAATTATATCTTGACGAGGATGGTGTTCTTACCCTTGCAACCAGCAGTTCTTGCTCCTTATCATTTTCAGGATTGGAACTTGAGGAAGGCAGGTGGCATCACCTTGCAGTTGTACATAGCAAGCCAAATGCTCTTGCTGGATTGTTCCAAGCCAGTGTTGCTTATGTATATCTTGATGGAAAGCTTAGACACACAGGGAAACTAGGATATTCTCCATCTCCGATTGGGAAACCTTTGCAGGTAACCGTGGGGACTCCAGTTAATTGTGCAAGAGTTAGTGACTCGACCTGGAAGGTCCGTTCTTGCTACCTTTTTGAGGAGGTGCTCACCTCAGGTAGTATTTGTTTCATGTACATTCTTGGTAGAGGATATAGAGGGCTCTTCCAGGACACGGATCTTCTTCGTTTTGTCCCCAACCAGGCATGTGGTGGTGGTAGCATGGCTATCTTAGATACCTTGGATGCTGACTTGACCTTGGCTTCTAATACACAGAAGCTTGACAAATCTAGTAAGCAAGTAGTCTCCAAGGCAGATGGCAGTGGAATTGTTTGGGATTTGGAGAGACTAGGTTATCTCTCTTCACAGCTCTCTGGGAAGAAGCTTATATTCGCATTTGATGGAACCTGTGCAGAAGCTATTCGAGCATCAGGGGAGCTATCCATGCTCAATCTAGTTGATCCATTGTCAGCAGCTGCTTCTCCTATTGGGGGTATACCACGATTTGGGCGTCTTCATGGGGATATTTACCTATGTAGGCAATGTGTAATTGGTGATACTATCTGCCTGGTTGGTGGGATGACTGTTATCCTGGCCTTAGTTGAGGCTGCTGAGACTAGGGACATGCTACAAATGGCCCTTACTTTACTGGCCTCTGCCCTTCATCAGAATCCTCAGAATGTGAGAGACATGCAAAAATGCCGGGGATACCATTTGTTGGCTCTCTTTTTGCGTCGTCAAATGTCACTGTTTGACATGCAATCTCTTGAGATCTTTTTCCAGATTGCTGCTTGTGAAGCTTCATTTTCGGAACCGAGGAAGTTGAAATATAATCGGACTAATTTGTCACCAGTTACAACTATGCAGGAAACCAGTTTTGAGGAACTTAATTTGTCAAGGTTTCGTGATGAGTTTTCTTCTGTTGGATCTCAAGGAGACATGGATGATTTTTCTGCACCAAAAGATTCATTTAGTCACATTTCGGAGCTTGAAAGTGCTGATATTCCGGATGAAACCTCAAATTGCATTGTCTTGTCAAATGAAGACATGGTTGAACATGTCTTGTTGGATTGGACATTGTGGGTAACGGCTCCAGTTGCAATTCAAATTGCACTTCTTGGTTTTCTTGAGCATCTAGTGTCCATGCACTGGTACAGAAATCATAACCTTACTGTTCTGCGCCGAATAAACCTTGTTCAACATTTATTAGTTACTCTACAGCGGGGTGATGTTGAAGTTCCCGTTTTGGAGAAATTGGTTGTATTGCTTGGTGTCATTTTAGAAGATGGGTTTCTCTCTTCTGAACTGGAACATGTGGTTCGGTTTGTGATTATGACATTTGATCCACCTGAATTGACACCCCGACATCCAATAGTGCGTGAGGCCATGGGAAAGCATGTAATCGTGAGAAACATGCTGCTGGAGATGCTTATTGATCTGCAAGTAACCATTAAATCCGAAGAATTGCTTGAGCAGTGGCATAAGATTGTTTCTTCTAAATTGATTACATATTTTCTAGATGAATCTGTTCACCCAACAAGTATGAGATGGATCATGACTCTTCTTGGAGTTTGTCTTACTTCGTCTCCTACATTTGCGCTAAAGTTTCGGACAAGTGGAGGTTATCAAGGCTTGACCCGGGTGCTTCCAAGCTTCTATGATTCCCCAGACATATATTACATTTTGTTCTGTCTGATATTCGGAAAGTCTGTCTATCCTAGATTGCCAGAAGTTCGCATGCTAGACTTTCATGCACTTATGCCAAATGATGGAAGTAATGTGGAACTGAAATTCGTAGAATTGTTGGAATCTGTTATTACCATGGCAAAATCTACATTTGATAGGCTGAGCATTCAGTCAATGCTTGCTCACCAATCTGGTAATCTTTCCCAGGTTGGTGCTGGCCTTGTGGCAGAACTCGTGAATGGAAATGCAGACATGGCCGGGGAGCTTCAAGGTGAAGCATTGATGCATAAAACATATGCGGCACGCTTAATGGGTGGGGAGGCATCAGCCCCTTTTGCTGCTACTTCAGTCTTGAGATTTATGGTTGATTTGGCAAAAATGTGCCCCCCTTTCACTGCTGTCTGCAAACGAGCAGAGTTTCTCGAAGGCTGCATTGACCTATATTTTTCTTGTGTCAGAGCGGCCCATGCTGTGAAGATGGCGAAGGAGCTATCTGTAAAGGCAGAAGAGAAGAACTTGAATGATTGTGACGATACCTGTAGTTCACAGAACACGTTTTCTAGCCTACCTCATGAACAGGATCAGTCTGCCAAAACCTCCATCAGTGTTGGAAGCTTCCCTCCTGCTCAGGTGAGTTCAAGTTCTGAAGATACGGCTGTTCCCCTAAATTCTGGGGCCGATGATAAAGCAAAGACCAAGGCTATTACAGCCCAGCCGGGATTGCACATATCAGTGCAAGAGGATGTACAAGCTGTTCAGAGCTTAGATGGTGACAATGCTGACCAAGTTTCTGCCACATCCAGCACAAATGATTTTAGTTTCCGTAAGGTCACCCTGGAACCCCTTAAACCAGTGGATTCTGAGAGTTCCGCATCTTTTACCATGCTTGATTCTCCCAATTTATCAGAGAAGTCTAGTTCGAGGCTCCCACTTACACCCTCTCCTTCTCCTGTTTTAGCATTGACATCTTGGCTGGGAAGTGTGGGCTATAATGAATTCAAATCTCCCTTGGTTGCCACTCCTTCCATTGATTCTTCTGCGACTACCACTGAATTTGATCCATCTGCAGAGCTGAAGTCTCCTGGGCCTTCTAATGCAAGTAATTTTTTTTCAGCTAGTCCAAAGCTACTTCTTGAAATGGATGATTGTGGCTATGGAGGTGGTCCTTGTTCCGCTGGAGCCACTGCTGTTTTAGATTTTATTGCAGAAGTTCTTTCTGAGTTTGTGACCGAGCAAATTAAAGCATCACAGATTATAGAGGGAATCTTGGAAAGTGTTCCATTATATGTTGATGTAGATTCTATGTTGGTATTCCAAGGATTGTGCCTTAGCAGACTGATGAACTTTCTGGAAAGGCGTCTCTTGCGCGATGATGAAGAAAATGAGAAAAAGCTAGATAAAAATCGTTGGTCCTCAAATTTAGATTCCTTATGCTGGATGATAGTGGATCGTGCATATATGGGCGCTTTTCCTCAACCCTCTGGAATACTAAAGACGCTTGAGTTCTTATTATCCATGCTACAATTAGCAAATAAAGATGGCCGAATTGAAGAAGCTACTCCTAGTGGGAAGAGCCTCTTATCTATTGCAAGAGGGAGCAGACAACTTGATGCTTATATACATTCAATTCTTAAAAATACAAATCGTATGATACTGTATTGTTTTCTGCCATCATTCTTGTCTTCAATAGGAGAAGATGATCTGCTTTTGTCCTTAGGTTTGCTAGTTGAATCAAAGAAGAGAGCTTCCTCCAACTCTTCACATGATAATTCAGGAATTAATATCGGCACAGTCTTACAGTTATTAGTTGCTCACAGGCGAATTATATTCTGTCCCAGCAATATGGATACCGATATAAATTGTTGTCTTTGTGTCAACTTAATATCTCTCCTGCATGACCAACGACAGAATGTGCAGAACATGGCTGTTGATATTGTCAAGTATCTCCTGGTGCATCGTCAGGTAGCTCTAGAAGATCTGCTGGTTTCTAAACCAAATCAAGGACACCAACTGGATGTGCTACATGGGGGATTTGACAAGTTATTAATATTGACTGAAAATTTATCTGCTTTCTTTGAATGGCTTCAGAGTTCTGAAGTGATGGTGAATAAAGTACTAGAGCAGTGTGCTTCCATTATGTGGGTACAGTATATTACTGGATCAGCAAAATTTCCAGGAGTGAGAATTAAAGCTATGGAGGGTCGTCGCAAGAGAGAAATGGGGAGAAAATCAAGGGATACATCAAAGTTAGATATAAAGCACTGGGAGCAGGTGAATGAACGGAGATATGCACTGGAATTGGTGCGTGATGCAATGTCCACTGAACTAAGAGTGGTGCGTCAAGACAAGTATGGATGGGTTCTGCATGCTGAGAGCGAGTGGCAAACGCATCTTCAACAACTTGTCCATGAGCGGGGAATATTCCCAATGCAAAAATCCTCTGTTAATCGGGATCCTGATTGGCAGCTTTGTCCAATTGAAGGTCCATACAGGATGCGCAAAAAACTTGAGCGCTGCAGATTGAAACTTGATACTATCCAAAATGTTCTTGATGGACAATTTGAAGTAAGGGAAGCAGAGCTGTCCAAAGAGAATAATGAGAATGATCTGGATGCTTCTGATAATGATTCTGAGTCATACTTTCAACTTTTGACTGATAGTGCCAAACAGAATGGCCTTGATGGTGAACTGTATGAAGGGTCATTTCTTAAAGAACCTGATAATGCCAAAGATGTTGCTTCTGTTAGTCATGAATGGAATGATGATAGAGCTAGTAGTATCAATGAAGCAAGTTTGCACTCTGCACTCGAGTTTGGTGGAAAATCTAGTTCAGCATCTGTCCCCATAGATGACAGTGTACATGAAAGATCTGACCTAGGGTCTCCATGGCAATCTTCTTCTGCAAGAATCGATGATGTCAAAGTCACAGATGATAAATCGGATAAGGAACTCCATGATAATGGTGAATACCTGATCAGGCCTTATCTGGAACCTTTTGAAAAGATACGATTTCGGTATAATTGTGAACGAGTTATGGGTCTGGACAAGCATGATGGTATATTTTTAATAGGCGAGCATTCTTTGTATGTGATTGAAAACTTCTATATCGACGACTCTGGGTGTATTTGTGAAAAGGAATGCGAAGATGAACTCTCTATCATTGATCAGGCTCTTGGTGTAAAGAAGGATGTTACTATGGATTTCCATTCAAAGTCAACTTCATCTTGGGGAGTAACAGTAAAGTCAGGAGTTGGGGGAAGAGCATGGGCCTACAATGGCGGTGCATGGGGAAAGGAGAAAGTCTGTACTAGTGGTAATCTACCTCACCCTTGGAACATGTGGAAACTTAACAGTGTTCATGAGCTTTTGAAGCGTGATTACCAGTTGCGTCCTGTTGCTGTTGAAATCTTTAGCATGGATGGATGTAATGATCTTTTGGTGTTCCACAAAAAAGAAAGGGAAGAAGTTTTCAAAAATCTAGTAGCCATGAATCTTCCCAGAAATAGCATGTTGGACACAACCATATCAGGATCAGCAAAACAAGAAAGCAATGAGGGTAGCCGCCTATTTAAGTCAATGGCCAAGTCCTTTTCAAAGAGGTGGCAAAATGGAGAAATAAGCAATTTCCAGTACCTCATGCATCTCAACACGTTGGCAGGACGGGGATACAGTGATCTTACCCAATATCCAGTGTTTCCATGGGTTCTGGCAGATTATGAGAGTGAAAACCTGGACTTATCAGATCCCAAGACTTTTCGTGGACTTGACAAACCGATGGGTTGTCAAACATTAGAGGGCAGAGAAGAATTCAGGAAAAGGTACGAGAGCTGGGATGATCCGGAGGTCCCAAAGTTCCATTATGGTTCTCATTATTCCAGTGCTGGGATTGTCCTCTTCTATCTTCTACGCCTACCACCTTTCAGTACAGAGAATCAAAAGCTACAGGGAGGGCAATTTGACCATGCTGATCGTCTTTTTAATAGTATTAAAGATACTTGGTTCAGTGCAGCTGGAAAGGGCAACACATCAGATGTGAAGGAGTTGATTCCTGAATTTTTCTACATGCCAGAGTTCCTGGAAAATCGTTTCAATCTTGATTTGGGAGAGAAGCAATCAGGAGAGAAGGTTGGTGATGTTGGCTTACCTCCATGGGCTAAAGGCAGTGCTAGAGAATTCATCAGGAAGCACAGGCAGGCCCTGGAATCTGACTACGTTTCACAAAATTTGCATCATTGGATAGATCTCATTTTTGGATATAAACAGAGAGGAAAGGCAGCTGAGGAAGCTGTGAATGTTTTCTATCACTACACGTACGAGGGGAGTGTAGACATAGATTCGGTGACAGATCCTGCAATGAAAGCCTCAATTCTAGCACAGATTAATCATTTTGGGCAGACACCCAAACAGCTATTCCTCAAACCCCATGTGAAAAGGCAGGTCAACAGAAGGGTTCCTCATCCACTTAAGTACTCTCACCATCTCGTTCAGCATGAGATACGCAAGACATCGTCTTCGATAACTCAGATTGTTACTGTCAATGAGAAAATCCTAGTGGCAGGAACAAATTGTTTGCTTAAGCCAAGAACGTATACCAAGTATGTTGCATGGGGTTTCCCAGATCGTAGCTTAAGATTTATGAGCTATGATCAAGATCGACTCCTATCGACACATGAGAATCTTCATGGGGGCAACCAGATTCAGTGTACTGGCGTTAGCCATGATGGTCAGATTCTGGTCACTGGGGCTGATGATGGTTTAGTTTCTGTTTGGAGAATCAGTAATTCTGGCTCCCGTGTCTTGAGGCGCTTGCAGTTGGAGAAGGCACTTTGCGCCCACGCATCCAGAATTACATGTCTTCATGTTAGCCAGCCTTACATGCTGATTGTGAGTGGATCAGATGACTGCACTGTTGTTATATGGGATCTCAGCTCCTTGGTTTTTGTTAGGCAGCTCCCTGAGTTTCCAGCCCCGATTTCTGCGATTTATGTGAATGACTTGACAGGGGATATTGTGACAGCAGCTGGAATTTTACTTGCAGTTTGGAGCGTTAATGGGGACTGCCTTGCAATGGTTAACACGTCTCAACTGCCTTCTGATTCAATTCTTTCTGTTACAAGTAGTTCATTTTCTGATTGGCTGGACACAAACTGGTATGTAACGGGTCATCAAAGTGGGGCTGTTAAGGTGTGGCAAATGGTTCACCACACCAACCTCGAGAGTTCCCAGCAGAAGTCAACGACCAATGGGATGGGTGGTTTAAATCTCAATGATAAAGTACCAGAGTACAGGTTGGTCCTCCACAAGGTGCTCAAGTTTCATAAGCATCCCGTTACTGCCCTTCTCCTTACAAATGACCTCAAGCAGTTACTAAGCGGGGATTCTGGCGGGCATTTGCTGTCATGGACAGTGCCAGAGGAAAGCTTGAGAGCATCAATGAATCAGGGGTGA

Protein Analysis

3595

Amino Acids

400.02

Weight (kDa)

5.66

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_BEACH PF14844 2889 - 2939 7e-07 PH domain associated with Beige/BEACH
Beach PF02138 2978 - 3257 6.8e-121 Beige/BEACH domain
WD40_CDC20-Fz PF24807 3303 - 3449 3.1e-07 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 3309 - 3442 5.7e-11 THOC3 beta-propeller domain
WD40_Prp19 PF24814 3310 - 3463 8e-11 Prp19 WD40 domain
NBCH_WD40 PF20426 3312 - 3472 8.2e-11 Neurobeachin beta propeller domain
Beta-prop_WDR5 PF25175 3319 - 3515 1.5e-14 WDR5 beta-propeller domain
WDR55 PF24796 3322 - 3511 3.5e-06 WDR55
Beta-prop_TEP1_2nd PF25047 3333 - 3509 3.7e-07 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 3342 - 3510 5.7e-12 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 3516, 7597
AasI GACNNNNNNGTC 1 cut(s) 4495
Acc16I TGCGCA 1 cut(s) 7835
Acc36I ACCTGC 4 cut(s) 3516, 3664, 7597, 9763
Acc65I GGTACC 1 cut(s) 2228
AccB1I GGYRCC 1 cut(s) 2228
AccB7I CCANNNNNTGG 7 cut(s) 751, 3254, 4157, 4369, 4800, 5420, 7476
AccBSI CCGCTC 3 cut(s) 3376, 5798, 7750
AccI GTMKAC 5 cut(s) 1251, 3109, 4147, 9663, 9926
AccII CGCG 1 cut(s) 6705
AccIII TCCGGA 4 cut(s) 225, 3387, 4657, 9175
AcoI YGGCCR 5 cut(s) 682, 1399, 5592, 6877, 8916
AcyI GRCGYC 2 cut(s) 4162, 6694
AdeI CACNNNGTG 1 cut(s) 10642
AfeI AGCGCT 1 cut(s) 7850
AflII CTTAAG 6 cut(s) 20, 28, 2996, 9800, 9911, 9964
AflIII ACRYGT 8 cut(s) 4708, 4963, 5889, 8673, 8985, 9645, 10187, 10413
AhdI GACNNNNNGTC 1 cut(s) 8215
AhlI ACTAGT 1 cut(s) 8645
AjiI CACGTC 1 cut(s) 10416
AjuI GAANNNNNNNTTGG 2 cut(s) 9731, 9763
AloI GAACNNNNNNTCC 4 cut(s) 2783, 2815, 3718, 3750
Alw21I GWGCWC 3 cut(s) 932, 3762, 10647
AlwNI CAGNNNCTG 8 cut(s) 3254, 3292, 4127, 8174, 9535, 9686, 10069, 10358
Ama87I CYCGRG 3 cut(s) 5289, 8144, 10550
Aor13HI TCCGGA 4 cut(s) 225, 3387, 4657, 9175
Aor51HI AGCGCT 1 cut(s) 7850
ArsI GACNNNNNNTTYG 2 cut(s) 9832, 9864
AseI ATTAAT 3 cut(s) 7116, 7382, 9717
Asp700I GAANNNNTTC 7 cut(s) 1488, 2961, 4071, 5178, 6612, 7419, 9632
Asp718I GGTACC 1 cut(s) 2228
AspA2I CCTAGG 1 cut(s) 8212
AsuC2I CCSGG 6 cut(s) 3361, 4355, 5290, 5291, 5596, 6054
AsuII TTCGAA 1 cut(s) 3058
AsuNHI GCTAGC 1 cut(s) 514
AvaI CYCGRG 3 cut(s) 5289, 8144, 10550
AvrII CCTAGG 1 cut(s) 8212
AxyI CCTNAGG 2 cut(s) 3766, 7051
BaeGI GKGCMC 1 cut(s) 5723
BaeI ACNNNNGTAYC 2 cut(s) 5979, 6012
BalI TGGCCA 2 cut(s) 1401, 8918
BamHI GGATCC 2 cut(s) 598, 7789
BanI GGYRCC 1 cut(s) 2228
BanII GRGCYC 2 cut(s) 2984, 3816
BarI GAAGNNNNNNTAC 4 cut(s) 1408, 1440, 8699, 8731
BauI CACGAG 1 cut(s) 5570
Bbv12I GWGCWC 3 cut(s) 932, 3762, 10647
BbvCI CCTCAGC 1 cut(s) 9615
BceAI ACGGC 5 cut(s) 43, 172, 1679, 4755, 6006
BciVI GTATCC 4 cut(s) 4352, 7177, 7567, 8996
BclI TGATCA 5 cut(s) 634, 2214, 8310, 8500, 9982
BcnI CCSGG 6 cut(s) 3361, 4355, 5290, 5291, 5596, 6054
BcuI ACTAGT 1 cut(s) 8645
BfmI CTRYAG 8 cut(s) 273, 2067, 2931, 4868, 5875, 6402, 7852, 9278
BfoI RGCGCY 3 cut(s) 6804, 7852, 10144
BfrI CTTAAG 6 cut(s) 20, 28, 2996, 9800, 9911, 9964
BfuAI ACCTGC 4 cut(s) 3516, 3664, 7597, 9763
BfuI GTATCC 4 cut(s) 4352, 7177, 7567, 8996
BglII AGATCT 4 cut(s) 4422, 7312, 8204, 9577
BlnI CCTAGG 1 cut(s) 8212
BlpI GCTNAGC 1 cut(s) 5498
BmcAI AGTACT 3 cut(s) 441, 7452, 9806
BmeRI GACNNNNNGTC 1 cut(s) 8215
BmeT110I CYCGRG 3 cut(s) 5289, 8144, 10550
BmgBI CACGTC 1 cut(s) 10416
BmrI ACTGGG 2 cut(s) 7609, 10086
BmtI GCTAGC 1 cut(s) 518
BmuI ACTGGG 2 cut(s) 7609, 10086
BpmI CTGGAG 7 cut(s) 1880, 3029, 3231, 3675, 4728, 5093, 6534
Bpu10I CCTNAGC 6 cut(s) 1094, 1719, 2195, 5964, 6665, 9615
Bpu1102I GCTNAGC 1 cut(s) 5498
Bpu14I TTCGAA 1 cut(s) 3058
BpuMI CCSGG 6 cut(s) 3361, 4355, 5290, 5291, 5596, 6054
Bsa29I ATCGAT 1 cut(s) 8247
BsaAI YACGTR 2 cut(s) 2505, 9648
BsaBI GATNNNNATC 3 cut(s) 993, 6738, 9987
BsaHI GRCGYC 2 cut(s) 4162, 6694
BsaI GGTCTC 2 cut(s) 2092, 8223
BsaWI WCCGGW 4 cut(s) 225, 3387, 4657, 9175
Bse118I RCCGGY 2 cut(s) 115, 680
Bse21I CCTNAGG 2 cut(s) 3766, 7051
Bse3DI GCAATG 6 cut(s) 14, 4199, 7656, 8893, 9696, 10410
Bse8I GATNNNNATC 3 cut(s) 993, 6738, 9987
BseAI TCCGGA 4 cut(s) 225, 3387, 4657, 9175
BseCI ATCGAT 1 cut(s) 8247
BseJI GATNNNNATC 3 cut(s) 993, 6738, 9987
BseMI GCAATG 6 cut(s) 14, 4199, 7656, 8893, 9696, 10410
BseRI GAGGAG 1 cut(s) 3767
BseSI GKGCMC 1 cut(s) 5723
BseYI CCCAGC 7 cut(s) 2528, 6048, 6310, 7172, 9165, 9218, 10560
BsgI GTGCAG 7 cut(s) 845, 4083, 4590, 7271, 8124, 9363, 10225
Bsh1236I CGCG 1 cut(s) 6705
Bsh1285I CGRYCG 1 cut(s) 2834
BshNI GGYRCC 1 cut(s) 2228
BshVI ATCGAT 1 cut(s) 8247
BsiEI CGRYCG 1 cut(s) 2834
BsiHKAI GWGCWC 3 cut(s) 932, 3762, 10647
BsiHKCI CYCGRG 3 cut(s) 5289, 8144, 10550
BsiWI CGTACG 1 cut(s) 9648
BsmBI CGTCTC 3 cut(s) 5241, 6701, 10422
BsmI GAATGC 8 cut(s) 867, 2361, 2461, 3066, 3425, 5502, 8413, 8480
Bso31I GGTCTC 2 cut(s) 2092, 8223
BsoBI CYCGRG 3 cut(s) 5289, 8144, 10550
Bsp119I TTCGAA 1 cut(s) 3058
Bsp1286I GDGCHC 6 cut(s) 932, 2984, 3762, 3816, 5723, 10647
Bsp13I TCCGGA 4 cut(s) 225, 3387, 4657, 9175
Bsp1407I TGTACA 4 cut(s) 3547, 3786, 6082, 8194
Bsp1720I GCTNAGC 1 cut(s) 5498
Bsp19I CCATGG 8 cut(s) 1023, 1117, 1266, 5037, 5472, 8222, 9035, 9485
BspDI ATCGAT 1 cut(s) 8247
BspEI TCCGGA 4 cut(s) 225, 3387, 4657, 9175
BspFNI CGCG 1 cut(s) 6705
BspHI TCATGA 6 cut(s) 637, 3370, 5205, 5908, 8086, 8695
BspMAI CTGCAG 2 cut(s) 6406, 7856
BspMI ACCTGC 4 cut(s) 3516, 3664, 7597, 9763
BspOI GCTAGC 1 cut(s) 518
BspQI GCTCTTC 4 cut(s) 156, 3821, 6902, 8590
BspT104I TTCGAA 1 cut(s) 3058
BspT107I GGYRCC 1 cut(s) 2228
BspTI CTTAAG 6 cut(s) 20, 28, 2996, 9800, 9911, 9964
BspTNI GGTCTC 2 cut(s) 2092, 8223
BsrBI CCGCTC 3 cut(s) 3376, 5798, 7750
BsrDI GCAATG 6 cut(s) 14, 4199, 7656, 8893, 9696, 10410
BsrFI RCCGGY 2 cut(s) 115, 680
BsrGI TGTACA 4 cut(s) 3547, 3786, 6082, 8194
BssAI RCCGGY 2 cut(s) 115, 680
BssNAI GTATAC 3 cut(s) 3110, 4148, 9927
BssNI GRCGYC 2 cut(s) 4162, 6694
BssSI CACGAG 1 cut(s) 5570
Bst1107I GTATAC 3 cut(s) 3110, 4148, 9927
Bst2BI CACGAG 1 cut(s) 5570
BstACI GRCGYC 2 cut(s) 4162, 6694
BstAFI CTTAAG 6 cut(s) 20, 28, 2996, 9800, 9911, 9964
BstAPI GCANNNNNTGC 4 cut(s) 564, 1894, 3431, 3486
BstAUI TGTACA 4 cut(s) 3547, 3786, 6082, 8194
BstBAI YACGTR 2 cut(s) 2505, 9648
BstBI TTCGAA 1 cut(s) 3058
BstDSI CCRYGG 9 cut(s) 1023, 1117, 1266, 3681, 5037, 5472, 8222, 9035, 9485
BstEII GGTNACC 3 cut(s) 2287, 3676, 6166
BstENI CCTNNNNNAGG 2 cut(s) 3749, 10637
BstFNI CGCG 1 cut(s) 6705
BstH2I RGCGCY 3 cut(s) 6804, 7852, 10144
BstMCI CGRYCG 1 cut(s) 2834
BstPI GGTNACC 3 cut(s) 2287, 3676, 6166
BstSFI CTRYAG 8 cut(s) 273, 2067, 2931, 4868, 5875, 6402, 7852, 9278
BstSLI GKGCMC 1 cut(s) 5723
BstSNI TACGTA 1 cut(s) 2505
BstUI CGCG 1 cut(s) 6705
BstXI CCANNNNNNTGG 5 cut(s) 2014, 3860, 7180, 8297, 10585
BstZ17I GTATAC 3 cut(s) 3110, 4148, 9927
Bsu15I ATCGAT 1 cut(s) 8247
Bsu36I CCTNAGG 2 cut(s) 3766, 7051
BsuI GTATCC 4 cut(s) 4352, 7177, 7567, 8996
BsuTUI ATCGAT 1 cut(s) 8247
BtgI CCRYGG 9 cut(s) 1023, 1117, 1266, 3681, 5037, 5472, 8222, 9035, 9485
BtgZI GCGATG 1 cut(s) 6720
BtrI CACGTC 1 cut(s) 10416
BtsI GCAGTG 7 cut(s) 930, 3979, 5132, 5730, 6519, 7466, 9505
BveI ACCTGC 4 cut(s) 3516, 3664, 7597, 9763
CaiI CAGNNNCTG 8 cut(s) 3254, 3292, 4127, 8174, 9535, 9686, 10069, 10358
CciI TCATGA 6 cut(s) 637, 3370, 5205, 5908, 8086, 8695
Cfr10I RCCGGY 2 cut(s) 115, 680
Cfr9I CCCGGG 1 cut(s) 5289
ClaI ATCGAT 1 cut(s) 8247
CseI GACGC 8 cut(s) 1702, 2504, 4151, 4373, 6683, 6841, 7664, 8714
CsiI ACCWGGT 1 cut(s) 1388
CspCI CAANNNNNGTGG 4 cut(s) 4986, 5021, 6373, 6408
DraI TTTAAA 2 cut(s) 1966, 10596
DraIII CACNNNGTG 1 cut(s) 10642
DrdI GACNNNNNNGTC 1 cut(s) 4495
DriI GACNNNNNGTC 1 cut(s) 8215
DseDI GACNNNNNNGTC 1 cut(s) 4495
EaeI YGGCCR 5 cut(s) 682, 1399, 5592, 6877, 8916
Eam1105I GACNNNNNGTC 1 cut(s) 8215
Eco105I TACGTA 1 cut(s) 2505
Eco147I AGGCCT 1 cut(s) 8317
Eco24I GRGCYC 2 cut(s) 2984, 3816
Eco31I GGTCTC 2 cut(s) 2092, 8223
Eco32I GATATC 1 cut(s) 280
Eco47III AGCGCT 1 cut(s) 7850
Eco81I CCTNAGG 2 cut(s) 3766, 7051
Eco88I CYCGRG 3 cut(s) 5289, 8144, 10550
Eco91I GGTNACC 3 cut(s) 2287, 3676, 6166
EcoNI CCTNNNNNAGG 2 cut(s) 3749, 10637
EcoO109I RGGNCCY 5 cut(s) 847, 1280, 1837, 9181, 9532
EcoO65I GGTNACC 3 cut(s) 2287, 3676, 6166
EcoRI GAATTC 3 cut(s) 6332, 9143, 9509
EcoRV GATATC 1 cut(s) 280
EcoT22I ATGCAT 3 cut(s) 3427, 5625, 8979
EcoT38I GRGCYC 2 cut(s) 2984, 3816
Esp3I CGTCTC 3 cut(s) 5241, 6701, 10422
FalI AAGNNNNNCTT 6 cut(s) 1268, 1300, 5103, 5135, 6899, 6931
FauI CCCGC 4 cut(s) 4866, 7743, 10703, 10715
FauNDI CATATG 1 cut(s) 5632
FbaI TGATCA 5 cut(s) 634, 2214, 8310, 8500, 9982
FblI GTMKAC 5 cut(s) 1251, 3109, 4147, 9663, 9926
FriOI GRGCYC 2 cut(s) 2984, 3816
FspI TGCGCA 1 cut(s) 7835
GsaI CCCAGC 7 cut(s) 2532, 6052, 6314, 7176, 9169, 9222, 10564
GsuI CTGGAG 7 cut(s) 1880, 3029, 3231, 3675, 4728, 5093, 6534
HaeII RGCGCY 3 cut(s) 6804, 7852, 10144
HgaI GACGC 8 cut(s) 1702, 2504, 4151, 4373, 6683, 6841, 7664, 8714
Hin1I GRCGYC 2 cut(s) 4162, 6694
HincII GTYRAC 7 cut(s) 498, 3118, 7213, 8553, 9778, 10411, 10572
HindII GTYRAC 7 cut(s) 498, 3118, 7213, 8553, 9778, 10411, 10572
HindIII AAGCTT 8 cut(s) 2033, 3617, 3929, 4034, 4449, 5302, 5950, 10756
HpaI GTTAAC 2 cut(s) 498, 10411
Hpy99I CGWCG 6 cut(s) 64, 115, 2722, 4389, 7545, 8450
HpyCH4IV ACGT 8 cut(s) 446, 2504, 5891, 8987, 9549, 9647, 9923, 10415
HpySE526I ACGT 8 cut(s) 446, 2504, 5891, 8987, 9549, 9647, 9923, 10415
Hsp92I GRCGYC 2 cut(s) 4162, 6694
KflI GGGWCCC 1 cut(s) 1280
Kpn2I TCCGGA 4 cut(s) 225, 3387, 4657, 9175
KpnI GGTACC 1 cut(s) 2232
KroI GCCGGC 2 cut(s) 115, 680
KroNI GCCGGC 2 cut(s) 117, 682
Ksp22I TGATCA 5 cut(s) 634, 2214, 8310, 8500, 9982
KspAI GTTAAC 2 cut(s) 498, 10411
LguI GCTCTTC 4 cut(s) 156, 3821, 6902, 8590
MabI ACCWGGT 1 cut(s) 1388
MaeII ACGT 8 cut(s) 446, 2504, 5891, 8987, 9549, 9647, 9923, 10415
MbiI CCGCTC 3 cut(s) 3376, 5798, 7750
MfeI CAATTG 1 cut(s) 7812
MhlI GDGCHC 6 cut(s) 932, 2984, 3762, 3816, 5723, 10647
MlsI TGGCCA 2 cut(s) 1401, 8918
MluNI TGGCCA 2 cut(s) 1401, 8918
MlyI GAGTC 9 cut(s) 2618, 2747, 3329, 3682, 3710, 5203, 7979, 8444, 9987
Mox20I TGGCCA 2 cut(s) 1401, 8918
Mph1103I ATGCAT 3 cut(s) 3427, 5625, 8979
MroI TCCGGA 4 cut(s) 225, 3387, 4657, 9175
MroNI GCCGGC 2 cut(s) 115, 680
MroXI GAANNNNTTC 7 cut(s) 1488, 2961, 4071, 5178, 6612, 7419, 9632
MscI TGGCCA 2 cut(s) 1401, 8918
MslI CAYNNNNRTG 7 cut(s) 309, 882, 1917, 2495, 6068, 8295, 10506
Msp20I TGGCCA 2 cut(s) 1401, 8918
MspA1I CMGCKG 7 cut(s) 3254, 4127, 4873, 6512, 9347, 9614, 10358
MspCI CTTAAG 6 cut(s) 20, 28, 2996, 9800, 9911, 9964
MunI CAATTG 1 cut(s) 7812
Mva1269I GAATGC 8 cut(s) 867, 2361, 2461, 3066, 3425, 5502, 8413, 8480
MvnI CGCG 1 cut(s) 6705
NaeI GCCGGC 2 cut(s) 117, 682
NciI CCSGG 6 cut(s) 3361, 4355, 5290, 5291, 5596, 6054
NcoI CCATGG 8 cut(s) 1023, 1117, 1266, 5037, 5472, 8222, 9035, 9485
NdeI CATATG 1 cut(s) 5632
NgoMIV GCCGGC 2 cut(s) 115, 680
NheI GCTAGC 1 cut(s) 514
NsbI TGCGCA 1 cut(s) 7835
NsiI ATGCAT 3 cut(s) 3427, 5625, 8979
NspV TTCGAA 1 cut(s) 3058
PaeI GCATGC 3 cut(s) 3005, 5392, 7706
PaeR7I CTCGAG 2 cut(s) 8144, 10550
PagI TCATGA 6 cut(s) 637, 3370, 5205, 5908, 8086, 8695
PaqCI CACCTGC 2 cut(s) 3516, 7597
PceI AGGCCT 1 cut(s) 8317
PciI ACATGT 4 cut(s) 4708, 4963, 8673, 10187
PciSI GCTCTTC 4 cut(s) 156, 3821, 6902, 8590
PcsI WCGNNNNNNNCGW 1 cut(s) 4159
PctI GAATGC 8 cut(s) 867, 2361, 2461, 3066, 3425, 5502, 8413, 8480
PdiI GCCGGC 2 cut(s) 117, 682
PdmI GAANNNNTTC 7 cut(s) 1488, 2961, 4071, 5178, 6612, 7419, 9632
Pfl23II CGTACG 1 cut(s) 9648
PflFI GACNNNGTC 1 cut(s) 9844
PflMI CCANNNNNTGG 7 cut(s) 751, 3254, 4157, 4369, 4800, 5420, 7476
PfoI TCCNGGA 4 cut(s) 1857, 3819, 7510, 9411
PleI GAGTC 9 cut(s) 2617, 2746, 3328, 3682, 3710, 5203, 7978, 8444, 9987
PpsI GAGTC 9 cut(s) 2617, 2746, 3328, 3682, 3710, 5203, 7978, 8444, 9987
Ppu21I YACGTR 2 cut(s) 2505, 9648
PpuMI RGGWCCY 3 cut(s) 1280, 1837, 9181
PscI ACATGT 4 cut(s) 4708, 4963, 8673, 10187
PshBI ATTAAT 3 cut(s) 7116, 7382, 9717
Psp5II RGGWCCY 3 cut(s) 1280, 1837, 9181
PspEI GGTNACC 3 cut(s) 2287, 3676, 6166
PspFI CCCAGC 7 cut(s) 2528, 6048, 6310, 7172, 9165, 9218, 10560
PspLI CGTACG 1 cut(s) 9648
PspPPI RGGWCCY 3 cut(s) 1280, 1837, 9181
PspXI VCTCGAGB 1 cut(s) 8144
PsrI GAACNNNNNNTAC 4 cut(s) 2136, 2168, 6075, 6107
PstI CTGCAG 2 cut(s) 6406, 7856
PstNI CAGNNNCTG 8 cut(s) 3254, 3292, 4127, 8174, 9535, 9686, 10069, 10358
PsyI GACNNNGTC 1 cut(s) 9844
PvuII CAGCTG 5 cut(s) 3254, 4127, 9347, 9614, 10358
RseI CAYNNNNRTG 7 cut(s) 309, 882, 1917, 2495, 6068, 8295, 10506
SapI GCTCTTC 4 cut(s) 156, 3821, 6902, 8590
ScaI AGTACT 3 cut(s) 441, 7452, 9806
SchI GAGTC 9 cut(s) 2618, 2747, 3329, 3682, 3710, 5203, 7979, 8444, 9987
SduI GDGCHC 6 cut(s) 932, 2984, 3762, 3816, 5723, 10647
SexAI ACCWGGT 1 cut(s) 1388
SfcI CTRYAG 8 cut(s) 273, 2067, 2931, 4868, 5875, 6402, 7852, 9278
Sfr274I CTCGAG 2 cut(s) 8144, 10550
SfuI TTCGAA 1 cut(s) 3058
SlaI CTCGAG 2 cut(s) 8144, 10550
SmaI CCCGGG 1 cut(s) 5291
SmiMI CAYNNNNRTG 7 cut(s) 309, 882, 1917, 2495, 6068, 8295, 10506
SnaBI TACGTA 1 cut(s) 2505
SpeI ACTAGT 1 cut(s) 8645
SphI GCATGC 3 cut(s) 3005, 5392, 7706
SseBI AGGCCT 1 cut(s) 8317
SspI AATATT 4 cut(s) 1569, 3160, 7386, 7758
StuI AGGCCT 1 cut(s) 8317
TaiI ACGT 8 cut(s) 449, 2507, 5894, 8990, 9552, 9650, 9926, 10418
TaqII GACCGA 2 cut(s) 2820, 6581
TauI GCSGC 9 cut(s) 89, 92, 95, 98, 260, 3379, 5639, 5801, 8901
TspGWI ACGGA 7 cut(s) 1627, 2117, 2148, 3722, 3842, 6149, 7633
TspMI CCCGGG 1 cut(s) 5289
Tth111I GACNNNGTC 1 cut(s) 9844
Van91I CCANNNNNTGG 7 cut(s) 751, 3254, 4157, 4369, 4800, 5420, 7476
Vha464I CTTAAG 6 cut(s) 20, 28, 2996, 9800, 9911, 9964
VspI ATTAAT 3 cut(s) 7116, 7382, 9717
XagI CCTNNNNNAGG 2 cut(s) 3749, 10637
XbaI TCTAGA 3 cut(s) 833, 5167, 7306
XcmI CCANNNNNNNNNTGG 4 cut(s) 1030, 3860, 5549, 9033
XhoI CTCGAG 2 cut(s) 8144, 10550
XmaI CCCGGG 1 cut(s) 5289
XmaJI CCTAGG 1 cut(s) 8212
XmiI GTMKAC 5 cut(s) 1251, 3109, 4147, 9663, 9926
XmnI GAANNNNTTC 7 cut(s) 1488, 2961, 4071, 5178, 6612, 7419, 9632
ZrmI AGTACT 3 cut(s) 441, 7452, 9806
Zsp2I ATGCAT 3 cut(s) 3427, 5625, 8979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.