domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G03060 AT1G03060 AT1G03060 AT1G03060 AT4G02660 AT4G02660 AT4G02660 |
| fragaria_vesca | FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 |
| malus_domestica | MD03G1257800.v1.1 MD11G1278500.v1.1 |
| prunus_persica | Prupe.8G234500_v2.0.a1 Prupe.8G234500_v2.0.a1 |
| pyrus_communis | pycom03g20420 pycom11g24600 |
| rosa_chinensis | RchiOBHm_Chr6g0289881 |
| rosa_laevigata | RLG00000012262 |
| rosa_multiflora | Rmu_ssc0000314.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00177500 |
| rosa_rugosa | Rorug06G0207500 Rorug06G0207600 Rorug06G0207700 Rorug06G0207800 Rorug06G0207900 |
| rosa_samantha | Rh6AG319100 Rh6BG326100 Rh6CG332000 Rh6DG317600 |
| rosa_wichuraiana | Rw6G027520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 3555, 7642 |
| AatII | GACGTC | 1 cut(s) | 6748 |
| Acc16I | TGCGCA | 1 cut(s) | 7880 |
| Acc36I | ACCTGC | 6 cut(s) | 3555, 3703, 5385, 5813, 7642, 9814 |
| Acc65I | GGTACC | 1 cut(s) | 2267 |
| AccB1I | GGYRCC | 3 cut(s) | 2267, 3208, 7392 |
| AccB7I | CCANNNNNTGG | 9 cut(s) | 775, 1264, 3293, 4265, 4408, 4839, 5323, 5459, 7521 |
| AccBSI | CCGCTC | 3 cut(s) | 3415, 7795, 9850 |
| AccI | GTMKAC | 7 cut(s) | 1275, 2526, 3148, 4186, 9148, 9828, 9977 |
| AccII | CGCG | 3 cut(s) | 5068, 5070, 7689 |
| AccIII | TCCGGA | 1 cut(s) | 1756 |
| AclI | AACGTT | 1 cut(s) | 7926 |
| AcoI | YGGCCR | 3 cut(s) | 1002, 1438, 1680 |
| AcyI | GRCGYC | 2 cut(s) | 4201, 6745 |
| AdeI | CACNNNGTG | 2 cut(s) | 10217, 10693 |
| AfeI | AGCGCT | 1 cut(s) | 7895 |
| AflII | CTTAAG | 3 cut(s) | 47, 55, 10015 |
| AflIII | ACRYGT | 4 cut(s) | 4747, 5002, 8724, 10238 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 4450, 6163, 8260 |
| AhlI | ACTAGT | 2 cut(s) | 4897, 8696 |
| AjiI | CACGTC | 1 cut(s) | 9050 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 7770, 7802, 8260, 8292, 8882, 8914, 9782, 9814 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2822, 2854, 3757, 3789 |
| Alw21I | GWGCWC | 6 cut(s) | 888, 956, 3023, 3801, 4351, 10698 |
| Alw44I | GTGCAC | 1 cut(s) | 884 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 3293, 4166, 8554, 9737, 10087, 10120, 10409 |
| Ama87I | CYCGRG | 1 cut(s) | 5328 |
| Aor13HI | TCCGGA | 1 cut(s) | 1756 |
| Aor51HI | AGCGCT | 1 cut(s) | 7895 |
| ApaLI | GTGCAC | 1 cut(s) | 884 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 9620, 9652 |
| AseI | ATTAAT | 1 cut(s) | 9768 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1527, 3000, 4110, 5217, 6663 |
| Asp718I | GGTACC | 1 cut(s) | 2267 |
| AspA2I | CCTAGG | 1 cut(s) | 8257 |
| AspLEI | GCGC | 7 cut(s) | 1369, 4872, 5070, 6854, 7689, 7881, 7896 |
| AsuC2I | CCSGG | 8 cut(s) | 3731, 4394, 4595, 5329, 5330, 7349, 7557, 9077 |
| AsuII | TTCGAA | 3 cut(s) | 1412, 3097, 3325 |
| AvaI | CYCGRG | 1 cut(s) | 5328 |
| AvrII | CCTAGG | 1 cut(s) | 8257 |
| AxyI | CCTNAGG | 2 cut(s) | 1098, 3805 |
| BaeGI | GKGCMC | 5 cut(s) | 888, 5762, 7395, 8226, 10222 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 6060, 6093 |
| BalI | TGGCCA | 1 cut(s) | 1440 |
| BanI | GGYRCC | 3 cut(s) | 2267, 3208, 7392 |
| BanII | GRGCYC | 3 cut(s) | 3023, 3855, 6225 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1447, 1479, 8750, 8782 |
| BauI | CACGAG | 2 cut(s) | 3410, 10058 |
| BbsI | GAAGAC | 9 cut(s) | 84, 844, 920, 2505, 4196, 4740, 6030, 6438, 10235 |
| Bbv12I | GWGCWC | 6 cut(s) | 888, 956, 3023, 3801, 4351, 10698 |
| BbvCI | CCTCAGC | 1 cut(s) | 9666 |
| BceAI | ACGGC | 6 cut(s) | 70, 196, 989, 4794, 7948, 8934 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 4479, 4513, 7947, 7976, 7981, 8010 |
| BciVI | GTATCC | 5 cut(s) | 4391, 7228, 7612, 9047, 10522 |
| BclI | TGATCA | 4 cut(s) | 2253, 8355, 8545, 10033 |
| BcnI | CCSGG | 8 cut(s) | 3731, 4394, 4595, 5329, 5330, 7349, 7557, 9077 |
| BcuI | ACTAGT | 2 cut(s) | 4897, 8696 |
| BfmI | CTRYAG | 9 cut(s) | 297, 1272, 2970, 4907, 5914, 6081, 8574, 9329, 10365 |
| BfoI | RGCGCY | 2 cut(s) | 6855, 7897 |
| BfrI | CTTAAG | 3 cut(s) | 47, 55, 10015 |
| BfuAI | ACCTGC | 6 cut(s) | 3555, 3703, 5385, 5813, 7642, 9814 |
| BfuI | GTATCC | 5 cut(s) | 4391, 7228, 7612, 9047, 10522 |
| BglII | AGATCT | 4 cut(s) | 1223, 3868, 7633, 8249 |
| BlnI | CCTAGG | 1 cut(s) | 8257 |
| BlpI | GCTNAGC | 1 cut(s) | 2912 |
| BmcAI | AGTACT | 3 cut(s) | 465, 7497, 9857 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 4450, 6163, 8260 |
| BmeT110I | CYCGRG | 1 cut(s) | 5328 |
| BmgBI | CACGTC | 1 cut(s) | 9050 |
| BmrI | ACTGGG | 6 cut(s) | 2457, 3678, 4253, 6945, 7654, 10137 |
| BmuI | ACTGGG | 6 cut(s) | 2457, 3678, 4253, 6945, 7654, 10137 |
| BoxI | GACNNNNGTC | 1 cut(s) | 501 |
| BpiI | GAAGAC | 9 cut(s) | 84, 844, 920, 2505, 4196, 4740, 6030, 6438, 10235 |
| BpmI | CTGGAG | 9 cut(s) | 1374, 2589, 3068, 3270, 6160, 6239, 6585, 6908, 10791 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1118, 2234, 6716, 7102, 9666 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2912 |
| Bpu14I | TTCGAA | 3 cut(s) | 1412, 3097, 3325 |
| BpuMI | CCSGG | 8 cut(s) | 3731, 4394, 4595, 5329, 5330, 7349, 7557, 9077 |
| BsaAI | YACGTR | 3 cut(s) | 2544, 9887, 9988 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1017 |
| BsaHI | GRCGYC | 2 cut(s) | 4201, 6745 |
| BsaI | GGTCTC | 5 cut(s) | 77, 2131, 3265, 7278, 7378 |
| BsaWI | WCCGGW | 5 cut(s) | 249, 1756, 3694, 4783, 8098 |
| Bse118I | RCCGGY | 4 cut(s) | 1250, 1682, 2846, 3343 |
| Bse21I | CCTNAGG | 2 cut(s) | 1098, 3805 |
| Bse3DI | GCAATG | 7 cut(s) | 41, 3228, 4238, 7701, 8944, 9747, 10461 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1017 |
| BseAI | TCCGGA | 1 cut(s) | 1756 |
| BseJI | GATNNNNATC | 1 cut(s) | 1017 |
| BseMI | GCAATG | 7 cut(s) | 41, 3228, 4238, 7701, 8944, 9747, 10461 |
| BseRI | GAGGAG | 2 cut(s) | 3806, 10037 |
| BseSI | GKGCMC | 5 cut(s) | 888, 5762, 7395, 8226, 10222 |
| BseYI | CCCAGC | 5 cut(s) | 3398, 6355, 9216, 9269, 10351 |
| BsgI | GTGCAG | 8 cut(s) | 3465, 4122, 4304, 4629, 8162, 8169, 8232, 10276 |
| Bsh1236I | CGCG | 3 cut(s) | 5068, 5070, 7689 |
| BshNI | GGYRCC | 3 cut(s) | 2267, 3208, 7392 |
| BsiHKAI | GWGCWC | 6 cut(s) | 888, 956, 3023, 3801, 4351, 10698 |
| BsiHKCI | CYCGRG | 1 cut(s) | 5328 |
| BslFI | GGGAC | 6 cut(s) | 3739, 3869, 4325, 7206, 8248, 10161 |
| BsmBI | CGTCTC | 3 cut(s) | 6736, 6752, 10183 |
| BsmFI | GGGAC | 6 cut(s) | 3739, 3869, 4325, 7206, 8248, 10161 |
| BsmI | GAATGC | 4 cut(s) | 2500, 3105, 5541, 8525 |
| Bso31I | GGTCTC | 5 cut(s) | 77, 2131, 3265, 7278, 7378 |
| BsoBI | CYCGRG | 1 cut(s) | 5328 |
| Bsp119I | TTCGAA | 3 cut(s) | 1412, 3097, 3325 |
| Bsp13I | TCCGGA | 1 cut(s) | 1756 |
| Bsp1407I | TGTACA | 4 cut(s) | 3586, 3825, 7006, 7300 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2912 |
| Bsp19I | CCATGG | 5 cut(s) | 1141, 1290, 5076, 9086, 9536 |
| BspEI | TCCGGA | 1 cut(s) | 1756 |
| BspFNI | CGCG | 3 cut(s) | 5068, 5070, 7689 |
| BspHI | TCATGA | 4 cut(s) | 5244, 7789, 8335, 8746 |
| BspMAI | CTGCAG | 1 cut(s) | 10369 |
| BspMI | ACCTGC | 6 cut(s) | 3555, 3703, 5385, 5813, 7642, 9814 |
| BspQI | GCTCTTC | 5 cut(s) | 180, 388, 3860, 4356, 8641 |
| BspT104I | TTCGAA | 3 cut(s) | 1412, 3097, 3325 |
| BspT107I | GGYRCC | 3 cut(s) | 2267, 3208, 7392 |
| BspTI | CTTAAG | 3 cut(s) | 47, 55, 10015 |
| BspTNI | GGTCTC | 5 cut(s) | 77, 2131, 3265, 7278, 7378 |
| BsrBI | CCGCTC | 3 cut(s) | 3415, 7795, 9850 |
| BsrDI | GCAATG | 7 cut(s) | 41, 3228, 4238, 7701, 8944, 9747, 10461 |
| BsrFI | RCCGGY | 4 cut(s) | 1250, 1682, 2846, 3343 |
| BsrGI | TGTACA | 4 cut(s) | 3586, 3825, 7006, 7300 |
| BssAI | RCCGGY | 4 cut(s) | 1250, 1682, 2846, 3343 |
| BssNAI | GTATAC | 3 cut(s) | 3149, 4187, 9978 |
| BssNI | GRCGYC | 2 cut(s) | 4201, 6745 |
| BssSI | CACGAG | 2 cut(s) | 3410, 10058 |
| Bst1107I | GTATAC | 3 cut(s) | 3149, 4187, 9978 |
| Bst2BI | CACGAG | 2 cut(s) | 3410, 10058 |
| BstACI | GRCGYC | 2 cut(s) | 4201, 6745 |
| BstAFI | CTTAAG | 3 cut(s) | 47, 55, 10015 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1268, 10217 |
| BstAUI | TGTACA | 4 cut(s) | 3586, 3825, 7006, 7300 |
| BstBAI | YACGTR | 3 cut(s) | 2544, 9887, 9988 |
| BstBI | TTCGAA | 3 cut(s) | 1412, 3097, 3325 |
| BstDSI | CCRYGG | 5 cut(s) | 1141, 1290, 5076, 9086, 9536 |
| BstEII | GGTNACC | 2 cut(s) | 2326, 5312 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 3788, 6468, 10688 |
| BstFNI | CGCG | 3 cut(s) | 5068, 5070, 7689 |
| BstH2I | RGCGCY | 2 cut(s) | 6855, 7897 |
| BstHHI | GCGC | 7 cut(s) | 1369, 4872, 5070, 6854, 7689, 7881, 7896 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 501 |
| BstPI | GGTNACC | 2 cut(s) | 2326, 5312 |
| BstSFI | CTRYAG | 9 cut(s) | 297, 1272, 2970, 4907, 5914, 6081, 8574, 9329, 10365 |
| BstSLI | GKGCMC | 5 cut(s) | 888, 5762, 7395, 8226, 10222 |
| BstSNI | TACGTA | 3 cut(s) | 2544, 9887, 9988 |
| BstUI | CGCG | 3 cut(s) | 5068, 5070, 7689 |
| BstV2I | GAAGAC | 9 cut(s) | 84, 844, 920, 2505, 4196, 4740, 6030, 6438, 10235 |
| BstX2I | RGATCY | 9 cut(s) | 1223, 2342, 3868, 4616, 7633, 7834, 8249, 9733, 10309 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1958, 2053, 2492, 7231 |
| BstYI | RGATCY | 9 cut(s) | 1223, 2342, 3868, 4616, 7633, 7834, 8249, 9733, 10309 |
| BstZ17I | GTATAC | 3 cut(s) | 3149, 4187, 9978 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1098, 3805 |
| BsuI | GTATCC | 5 cut(s) | 4391, 7228, 7612, 9047, 10522 |
| BtgI | CCRYGG | 5 cut(s) | 1141, 1290, 5076, 9086, 9536 |
| BtgZI | GCGATG | 2 cut(s) | 7328, 7704 |
| BtrI | CACGTC | 1 cut(s) | 9050 |
| BtsI | GCAGTG | 5 cut(s) | 111, 4018, 5171, 6027, 7511 |
| BveI | ACCTGC | 6 cut(s) | 3555, 3703, 5385, 5813, 7642, 9814 |
| CaiI | CAGNNNCTG | 7 cut(s) | 3293, 4166, 8554, 9737, 10087, 10120, 10409 |
| CciI | TCATGA | 4 cut(s) | 5244, 7789, 8335, 8746 |
| CfoI | GCGC | 7 cut(s) | 1369, 4872, 5070, 6854, 7689, 7881, 7896 |
| Cfr10I | RCCGGY | 4 cut(s) | 1250, 1682, 2846, 3343 |
| Cfr9I | CCCGGG | 1 cut(s) | 5328 |
| CseI | GACGC | 7 cut(s) | 4190, 4412, 6892, 7709, 8205, 8765, 10200 |
| CsiI | ACCWGGT | 2 cut(s) | 1427, 6159 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2715, 2750 |
| DraI | TTTAAA | 5 cut(s) | 1173, 1716, 2005, 8092, 10647 |
| DraIII | CACNNNGTG | 2 cut(s) | 10217, 10693 |
| DriI | GACNNNNNGTC | 3 cut(s) | 4450, 6163, 8260 |
| EaeI | YGGCCR | 3 cut(s) | 1002, 1438, 1680 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 4450, 6163, 8260 |
| EciI | GGCGGA | 2 cut(s) | 3400, 6946 |
| Ecl136II | GAGCTC | 1 cut(s) | 3021 |
| Eco105I | TACGTA | 3 cut(s) | 2544, 9887, 9988 |
| Eco147I | AGGCCT | 1 cut(s) | 1096 |
| Eco24I | GRGCYC | 3 cut(s) | 3023, 3855, 6225 |
| Eco31I | GGTCTC | 5 cut(s) | 77, 2131, 3265, 7278, 7378 |
| Eco32I | GATATC | 2 cut(s) | 3845, 7171 |
| Eco47III | AGCGCT | 1 cut(s) | 7895 |
| Eco53kI | GAGCTC | 1 cut(s) | 3021 |
| Eco81I | CCTNAGG | 2 cut(s) | 1098, 3805 |
| Eco88I | CYCGRG | 1 cut(s) | 5328 |
| Eco91I | GGTNACC | 2 cut(s) | 2326, 5312 |
| EcoICRI | GAGCTC | 1 cut(s) | 3021 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 3788, 6468, 10688 |
| EcoO109I | RGGNCCY | 6 cut(s) | 871, 1303, 1876, 3726, 6473, 8262 |
| EcoO65I | GGTNACC | 2 cut(s) | 2326, 5312 |
| EcoRI | GAATTC | 2 cut(s) | 7209, 9194 |
| EcoRV | GATATC | 2 cut(s) | 3845, 7171 |
| EcoT22I | ATGCAT | 2 cut(s) | 5664, 9030 |
| EcoT38I | GRGCYC | 3 cut(s) | 3023, 3855, 6225 |
| Esp3I | CGTCTC | 3 cut(s) | 6736, 6752, 10183 |
| FaqI | GGGAC | 6 cut(s) | 3739, 3869, 4325, 7206, 8248, 10161 |
| FauI | CCCGC | 4 cut(s) | 4705, 4905, 5687, 7788 |
| FauNDI | CATATG | 2 cut(s) | 5671, 7150 |
| FbaI | TGATCA | 4 cut(s) | 2253, 8355, 8545, 10033 |
| FblI | GTMKAC | 7 cut(s) | 1275, 2526, 3148, 4186, 9148, 9828, 9977 |
| FriOI | GRGCYC | 3 cut(s) | 3023, 3855, 6225 |
| FspI | TGCGCA | 1 cut(s) | 7880 |
| GlaI | GCGC | 7 cut(s) | 1368, 4871, 5069, 6853, 7688, 7880, 7895 |
| GsaI | CCCAGC | 5 cut(s) | 3402, 6359, 9220, 9273, 10355 |
| GsuI | CTGGAG | 9 cut(s) | 1374, 2589, 3068, 3270, 6160, 6239, 6585, 6908, 10791 |
| HaeII | RGCGCY | 2 cut(s) | 6855, 7897 |
| HgaI | GACGC | 7 cut(s) | 4190, 4412, 6892, 7709, 8205, 8765, 10200 |
| HhaI | GCGC | 7 cut(s) | 1369, 4872, 5070, 6854, 7689, 7881, 7896 |
| Hin1I | GRCGYC | 2 cut(s) | 4201, 6745 |
| Hin6I | GCGC | 7 cut(s) | 1367, 4870, 5068, 6852, 7687, 7879, 7894 |
| HinP1I | GCGC | 7 cut(s) | 1367, 4870, 5068, 6852, 7687, 7879, 7894 |
| HincII | GTYRAC | 6 cut(s) | 522, 3157, 8604, 9829, 10462, 10623 |
| HindII | GTYRAC | 6 cut(s) | 522, 3157, 8604, 9829, 10462, 10623 |
| HindIII | AAGCTT | 4 cut(s) | 2072, 4073, 5989, 9747 |
| HpaI | GTTAAC | 2 cut(s) | 522, 10462 |
| Hpy99I | CGWCG | 7 cut(s) | 91, 133, 136, 720, 4428, 7590, 7969 |
| HpyCH4IV | ACGT | 8 cut(s) | 2543, 5525, 6745, 7926, 9049, 9886, 9974, 9987 |
| HpySE526I | ACGT | 8 cut(s) | 2543, 5525, 6745, 7926, 9049, 9886, 9974, 9987 |
| Hsp92I | GRCGYC | 2 cut(s) | 4201, 6745 |
| HspAI | GCGC | 7 cut(s) | 1367, 4870, 5068, 6852, 7687, 7879, 7894 |
| KflI | GGGWCCC | 2 cut(s) | 3726, 8262 |
| Kpn2I | TCCGGA | 1 cut(s) | 1756 |
| KpnI | GGTACC | 1 cut(s) | 2271 |
| Ksp22I | TGATCA | 4 cut(s) | 2253, 8355, 8545, 10033 |
| KspAI | GTTAAC | 2 cut(s) | 522, 10462 |
| LguI | GCTCTTC | 5 cut(s) | 180, 388, 3860, 4356, 8641 |
| MabI | ACCWGGT | 2 cut(s) | 1427, 6159 |
| MaeII | ACGT | 8 cut(s) | 2543, 5525, 6745, 7926, 9049, 9886, 9974, 9987 |
| MbiI | CCGCTC | 3 cut(s) | 3415, 7795, 9850 |
| MfeI | CAATTG | 1 cut(s) | 7857 |
| MflI | RGATCY | 9 cut(s) | 1223, 2342, 3868, 4616, 7633, 7834, 8249, 9733, 10309 |
| MlsI | TGGCCA | 1 cut(s) | 1440 |
| MluNI | TGGCCA | 1 cut(s) | 1440 |
| Mox20I | TGGCCA | 1 cut(s) | 1440 |
| Mph1103I | ATGCAT | 2 cut(s) | 5664, 9030 |
| MroI | TCCGGA | 1 cut(s) | 1756 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1527, 3000, 4110, 5217, 6663 |
| MscI | TGGCCA | 1 cut(s) | 1440 |
| MslI | CAYNNNNRTG | 7 cut(s) | 333, 906, 1956, 2534, 7229, 8340, 10557 |
| Msp20I | TGGCCA | 1 cut(s) | 1440 |
| MspA1I | CMGCKG | 7 cut(s) | 3290, 4166, 4613, 4700, 4912, 8773, 10409 |
| MspCI | CTTAAG | 3 cut(s) | 47, 55, 10015 |
| MssI | GTTTAAAC | 1 cut(s) | 10647 |
| MunI | CAATTG | 1 cut(s) | 7857 |
| Mva1269I | GAATGC | 4 cut(s) | 2500, 3105, 5541, 8525 |
| MvnI | CGCG | 3 cut(s) | 5068, 5070, 7689 |
| NciI | CCSGG | 8 cut(s) | 3731, 4394, 4595, 5329, 5330, 7349, 7557, 9077 |
| NcoI | CCATGG | 5 cut(s) | 1141, 1290, 5076, 9086, 9536 |
| NdeI | CATATG | 2 cut(s) | 5671, 7150 |
| NsbI | TGCGCA | 1 cut(s) | 7880 |
| NsiI | ATGCAT | 2 cut(s) | 5664, 9030 |
| NspV | TTCGAA | 3 cut(s) | 1412, 3097, 3325 |
| PaeI | GCATGC | 4 cut(s) | 332, 3900, 5431, 7751 |
| PagI | TCATGA | 4 cut(s) | 5244, 7789, 8335, 8746 |
| PaqCI | CACCTGC | 2 cut(s) | 3555, 7642 |
| PceI | AGGCCT | 1 cut(s) | 1096 |
| PciI | ACATGT | 4 cut(s) | 4747, 5002, 8724, 10238 |
| PciSI | GCTCTTC | 5 cut(s) | 180, 388, 3860, 4356, 8641 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3844, 6751 |
| PctI | GAATGC | 4 cut(s) | 2500, 3105, 5541, 8525 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1527, 3000, 4110, 5217, 6663 |
| PflMI | CCANNNNNTGG | 9 cut(s) | 775, 1264, 3293, 4265, 4408, 4839, 5323, 5459, 7521 |
| PfoI | TCCNGGA | 5 cut(s) | 570, 1390, 1896, 4593, 7555 |
| PmeI | GTTTAAAC | 1 cut(s) | 10647 |
| Ppu21I | YACGTR | 3 cut(s) | 2544, 9887, 9988 |
| PpuMI | RGGWCCY | 4 cut(s) | 1303, 1876, 3726, 8262 |
| PscI | ACATGT | 4 cut(s) | 4747, 5002, 8724, 10238 |
| PshAI | GACNNNNGTC | 1 cut(s) | 501 |
| PshBI | ATTAAT | 1 cut(s) | 9768 |
| Psp124BI | GAGCTC | 1 cut(s) | 3023 |
| Psp1406I | AACGTT | 1 cut(s) | 7926 |
| Psp5II | RGGWCCY | 4 cut(s) | 1303, 1876, 3726, 8262 |
| PspEI | GGTNACC | 2 cut(s) | 2326, 5312 |
| PspFI | CCCAGC | 5 cut(s) | 3398, 6355, 9216, 9269, 10351 |
| PspPPI | RGGWCCY | 4 cut(s) | 1303, 1876, 3726, 8262 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2175, 2207 |
| PstI | CTGCAG | 1 cut(s) | 10369 |
| PstNI | CAGNNNCTG | 7 cut(s) | 3293, 4166, 8554, 9737, 10087, 10120, 10409 |
| PsuI | RGATCY | 9 cut(s) | 1223, 2342, 3868, 4616, 7633, 7834, 8249, 9733, 10309 |
| PvuII | CAGCTG | 4 cut(s) | 3290, 4613, 8773, 10409 |
| RseI | CAYNNNNRTG | 7 cut(s) | 333, 906, 1956, 2534, 7229, 8340, 10557 |
| SacI | GAGCTC | 1 cut(s) | 3023 |
| SalI | GTCGAC | 1 cut(s) | 9827 |
| SapI | GCTCTTC | 5 cut(s) | 180, 388, 3860, 4356, 8641 |
| ScaI | AGTACT | 3 cut(s) | 465, 7497, 9857 |
| SexAI | ACCWGGT | 2 cut(s) | 1427, 6159 |
| SfcI | CTRYAG | 9 cut(s) | 297, 1272, 2970, 4907, 5914, 6081, 8574, 9329, 10365 |
| SfuI | TTCGAA | 3 cut(s) | 1412, 3097, 3325 |
| SmaI | CCCGGG | 1 cut(s) | 5330 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 333, 906, 1956, 2534, 7229, 8340, 10557 |
| SnaBI | TACGTA | 3 cut(s) | 2544, 9887, 9988 |
| SpeI | ACTAGT | 2 cut(s) | 4897, 8696 |
| SphI | GCATGC | 4 cut(s) | 332, 3900, 5431, 7751 |
| SseBI | AGGCCT | 1 cut(s) | 1096 |
| SspI | AATATT | 3 cut(s) | 1608, 3199, 7803 |
| SstI | GAGCTC | 1 cut(s) | 3023 |
| StuI | AGGCCT | 1 cut(s) | 1096 |
| TaiI | ACGT | 8 cut(s) | 2546, 5528, 6748, 7929, 9052, 9889, 9977, 9990 |
| TaqII | GACCGA | 3 cut(s) | 59, 6632, 10056 |
| TspMI | CCCGGG | 1 cut(s) | 5328 |
| Van91I | CCANNNNNTGG | 9 cut(s) | 775, 1264, 3293, 4265, 4408, 4839, 5323, 5459, 7521 |
| Vha464I | CTTAAG | 3 cut(s) | 47, 55, 10015 |
| VneI | GTGCAC | 1 cut(s) | 884 |
| VspI | ATTAAT | 1 cut(s) | 9768 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 3788, 6468, 10688 |
| XbaI | TCTAGA | 4 cut(s) | 4816, 5206, 6736, 7357 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 5588 |
| XmaI | CCCGGG | 1 cut(s) | 5328 |
| XmaJI | CCTAGG | 1 cut(s) | 8257 |
| XmiI | GTMKAC | 7 cut(s) | 1275, 2526, 3148, 4186, 9148, 9828, 9977 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1527, 3000, 4110, 5217, 6663 |
| ZraI | GACGTC | 1 cut(s) | 6746 |
| ZrmI | AGTACT | 3 cut(s) | 465, 7497, 9857 |
| Zsp2I | ATGCAT | 2 cut(s) | 5664, 9030 |