Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003867

Physical Location & Seq

Genomic Coordinates Reverse (-)

33135436 .. 33135720

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0207700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGATTTCGTCCACTCGGGGCTTAGGGTGCCTGCTAACACTTAACATATACAAGTTTGGGTTCACAACTGCATTTGCTTTTAACTTCTCTGGCCTCAATGGCCTCAGCATTTTTATGGGTCGCGCAGATGTGGAAGTTGGCGACGTTGTACCCATCCACTCTCACCCCGGAGCTACCAAACTGGTGGTTATTGGGGAAGAAAGTTCGACAATTGGTGGGTTCAATGCCTCGAACAACAAGGTTTATCAAAAGCCCCTGAACAAGGGTGACACTATGGTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009825 GO:0009845 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010154 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0032991 GO:0033554 GO:0033962 GO:0033993 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051049 GO:0051716 GO:0060341 GO:0061458 GO:0065003 GO:0065007 GO:0070925 GO:0071214 GO:0071470 GO:0071472 GO:0071826 GO:0071840 GO:0080001 GO:0090351 GO:0090558 GO:0090626 GO:0097305 GO:0104004 GO:1901700 GO:1903335 GO:1904580 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Laminin_G_3 PH_BEACH WD40

Protein Analysis

94

Amino Acids

9.98

Weight (kDa)

7.91

Isoelectric Point (pI)

22.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	21 - 93	1.7e-07	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03060 AT1G03060 AT1G03060 AT1G03060 AT4G02660 AT4G02660 AT4G02660
fragaria_vesca	FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920
malus_domestica	MD03G1257800.v1.1 MD11G1278500.v1.1
prunus_persica	Prupe.8G234500_v2.0.a1 Prupe.8G234500_v2.0.a1
pyrus_communis	pycom03g20420 pycom11g24600
rosa_chinensis	RchiOBHm_Chr6g0289881
rosa_laevigata	RLG00000012262
rosa_multiflora	Rmu_ssc0000314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177500
rosa_rugosa	Rorug06G0207500 Rorug06G0207600 Rorug06G0207700 Rorug06G0207800 Rorug06G0207900
rosa_samantha	Rh6AG319100 Rh6BG326100 Rh6CG332000 Rh6DG317600
rosa_wichuraiana	Rw6G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	27
AccII	CGCG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	2 cut(s)	91, 100
AspLEI	GCGC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	155, 278
AvaI	CYCGRG	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	168
Bpu10I	CCTNAGC	2 cut(s)	22, 104
BpuMI	CCSGG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	93, 102
BshNI	GGYRCC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	262
BsnI	GGCC	2 cut(s)	93, 102
BsoBI	CYCGRG	1 cut(s)	15
BspANI	GGCC	2 cut(s)	93, 102
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	22, 104
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 99
BstSCI	CCNGG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	123
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	93, 102
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	149
CviJI	RGCY	5 cut(s)	21, 93, 102, 173, 253
CviKI_1	RGCY	5 cut(s)	21, 93, 102, 173, 253
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	2 cut(s)	22, 104
Eco88I	CYCGRG	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	260
FaiI	YATR	4 cut(s)	47, 49, 116, 275
FokI	GGATG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	93, 102
HapII	CCGG	1 cut(s)	168
HhaI	GCGC	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	155, 278
Hpy166II	GTNNAC	2 cut(s)	12, 63
Hpy8I	GTNNAC	2 cut(s)	12, 63
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 99
HpyF3I	CTNAG	2 cut(s)	22, 104
HpySE526I	ACGT	1 cut(s)	144
HspAI	GCGC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	5 cut(s)	44, 75, 167, 181, 269
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	266
MboII	GAAGA	1 cut(s)	209
MfeI	CAATTG	1 cut(s)	210
MluCI	AATT	1 cut(s)	210
MnlI	CCTC	3 cut(s)	104, 113, 238
MseI	TTAA	2 cut(s)	42, 81
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	27, 99
NciI	CCSGG	1 cut(s)	168
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	29
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	42, 81
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	3 cut(s)	147, 175, 243
SfiI	GGCCNNNNNGGCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	166
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	206, 230
TasI	AATT	1 cut(s)	210
Tru1I	TTAA	2 cut(s)	42, 81
Tru9I	TTAA	2 cut(s)	42, 81
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.