Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003867

Physical Location & Seq

Genomic Coordinates Reverse (-)

33123385 .. 33125643

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0207600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGAAGGGCATTTATCACAAGGAGGTAGGATTCCTGGTGGGGGAAGCTATGCTGGTCTTGATTTGCAAGGGTCAATGAGGGCTCATCATCAGACACAACACCCACACACCCTACACCAGCAACATCATCCGATTTCTCGTCAAGGGTCCATGGTGCACCCCTCGATTCACGAGGGTTTTCCTGTCAAAATGGGAACCATGCATAACTGTGATCGGACCCTTTCCATGGTTGATTACAATAAGGGAGAGAAATGCAAGAACTCGGCAAGCGATGAGGATGAGCCGAGTTATACAGAGGAGGGTGTTGATAGTCATATTGAAGCACAGAGAGGGAAGAAGGGGTCTCCTTGGCAGCGTGTGAAGTGGACGGATAAGATGGTGAGGCTTCTGATAACTGCAGTATCTTATATAGGTGAGGATATTGGTTCAGATTGTGGTGGCGGGGGAAGAAGGAAGTTTTCTGCTCTGCAGAAAAAGGGTAAGTGGAAATCTGTTTCCAAGGTCATGGCAGAAAGGGGTTATCATGTTTCTCCACAGCAGTGTGAGGATAAATTCAATGACCTTAATAAAAGGTATAAGAAACTTAATGACATGCTGGGGAGGGGCACTTCTTGCCAGGTTGTTGAGAACCCTACACTTTTGGATGTGATAGATTACTTAACAGAGAAAGAAAAAGATGATGTTAGGAAAATATTAAGTTCAAAGCACCTGTTTTATGAAGAGATGTGTTCCTACCATAATGGGAATCGTTTACATCTGCCTCACGATCCAGCATTGCAGCATTCCTTGCAGGAGGCTCTTAGAAATAGAGATGATCATGACACTGATGATCTGAGGAGGCATCACCATGATGATCTTGATGAAGATGATCAAGATATGGAAACTGATGAGCGTGATGATTTAGAGGAAAATAATGCTTCACATGGTGATAACAGGGGAATATTTGGGGGGTTAGGGGACTCTGTGAAGAGGTTGAGGCAAGGTCAAGGCCGTGAAGACTTTAACTTTGGTGGTTCTTTCAATGCCCAAGATTGTAACCAAAGTTCTTATTCTCATCCCCAAATTGCCCAAGGTGATTTGAATCAAGTTTTACCTGATAGCACAAAAGCTGCTTGGTTACAAAAGCAGTGGATTGAATCCCGATCTGTTCAGTTAGAAGAACAGAAGCTACAAATTCAAGTTGAGATGTTAGAATTGGAGAAACAACGTCTCAAGTGGCAAAAATTTAGCAAGAAAAGGGACCGTGAACTGGAAAAGCTGAAGATGGAAAATGAGAGAATGAAGCTTGAGAATGAGCGTATGGCATTAGAATTGAAAAGGAAGGAAATGGGTGCTGGATTTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009825 GO:0009845 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010154 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0032991 GO:0033554 GO:0033962 GO:0033993 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051049 GO:0051716 GO:0060341 GO:0061458 GO:0065003 GO:0065007 GO:0070925 GO:0071214 GO:0071470 GO:0071472 GO:0071826 GO:0071840 GO:0080001 GO:0090351 GO:0090558 GO:0090626 GO:0097305 GO:0104004 GO:1901700 GO:1903335 GO:1904580 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Laminin_G_3 PH_BEACH WD40

Protein Analysis

448

Amino Acids

51.45

Weight (kDa)

6.25

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	119 - 209	1.7e-17	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03060 AT1G03060 AT1G03060 AT1G03060 AT4G02660 AT4G02660 AT4G02660
fragaria_vesca	FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920
malus_domestica	MD03G1257800.v1.1 MD11G1278500.v1.1
prunus_persica	Prupe.8G234500_v2.0.a1 Prupe.8G234500_v2.0.a1
pyrus_communis	pycom03g20420 pycom11g24600
rosa_chinensis	RchiOBHm_Chr6g0289881
rosa_laevigata	RLG00000012262
rosa_multiflora	Rmu_ssc0000314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177500
rosa_rugosa	Rorug06G0207500 Rorug06G0207600 Rorug06G0207700 Rorug06G0207800 Rorug06G0207900
rosa_samantha	Rh6AG319100 Rh6BG326100 Rh6CG332000 Rh6DG317600
rosa_wichuraiana	Rw6G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	1 cut(s)	761
AcsI	RAATTY	3 cut(s)	551, 1173, 1223
AcuI	CTGAAG	1 cut(s)	1280
AdeI	CACNNNGTG	1 cut(s)	926
AfiI	CCNNNNNNNGG	3 cut(s)	41, 226, 1249
AgsI	TTSAA	8 cut(s)	320, 556, 702, 1021, 1081, 1136, 1178, 1315
AjnI	CCWGG	2 cut(s)	34, 615
AleI	CACNNNNGTG	1 cut(s)	538
AluBI	AGCT	6 cut(s)	48, 1109, 1168, 1258, 1285, 1344
AluI	AGCT	6 cut(s)	48, 1109, 1168, 1258, 1285, 1344
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	348, 1214
Alw44I	GTGCAC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	761
AoxI	GGCC	1 cut(s)	988
ApaLI	GTGCAC	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	352, 778, 1109
ApoI	RAATTY	3 cut(s)	551, 1173, 1223
ArsI	GACNNNNNNTTYG	2 cut(s)	989, 1021
AspS9I	GGNCC	3 cut(s)	147, 216, 1240
AsuHPI	GGTGA	5 cut(s)	391, 425, 836, 938, 1085
AvaII	GGWCC	3 cut(s)	147, 216, 1240
BaeGI	GKGCMC	2 cut(s)	159, 608
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BanII	GRGCYC	1 cut(s)	85
BauI	CACGAG	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	1002
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	364, 790, 1096
BccI	CCATC	2 cut(s)	370, 1258
BceAI	ACGGC	1 cut(s)	975
BciT130I	CCWGG	2 cut(s)	36, 617
BclI	TGATCA	2 cut(s)	814, 868
BcoDI	GTCTC	2 cut(s)	348, 1214
BfmI	CTRYAG	2 cut(s)	396, 467
BisI	GCNGC	3 cut(s)	353, 779, 1110
BlsI	GCNGC	3 cut(s)	354, 780, 1111
Bme1390I	CCNGG	2 cut(s)	36, 617
Bme18I	GGWCC	3 cut(s)	147, 216, 1240
BmgT120I	GGNCC	3 cut(s)	147, 216, 1240
BmiI	GGNNCC	4 cut(s)	148, 196, 218, 1241
BmrFI	CCNGG	2 cut(s)	36, 617
BmsI	GCATC	1 cut(s)	850
BpiI	GAAGAC	1 cut(s)	1002
BpuEI	CTTGAG	2 cut(s)	1196, 1307
BsaBI	GATNNNNATC	1 cut(s)	1080
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	5 cut(s)	150, 225, 347, 498, 1069
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 226, 1249
Bse1I	ACTGG	1 cut(s)	1254
Bse3DI	GCAATG	1 cut(s)	773
Bse8I	GATNNNNATC	1 cut(s)	1080
BseBI	CCWGG	2 cut(s)	36, 617
BseDI	CCNNGG	5 cut(s)	150, 225, 347, 498, 1069
BseGI	GGATG	4 cut(s)	127, 283, 649, 1054
BseJI	GATNNNNATC	1 cut(s)	1080
BseLI	CCNNNNNNNGG	3 cut(s)	41, 226, 1249
BseMI	GCAATG	1 cut(s)	773
BseMII	CTCAG	1 cut(s)	824
BseNI	ACTGG	1 cut(s)	1254
BseRI	GAGGAG	2 cut(s)	311, 850
BseSI	GKGCMC	2 cut(s)	159, 608
BseXI	GCAGC	3 cut(s)	364, 790, 1096
BseYI	CCCAGC	1 cut(s)	595
BshFI	GGCC	1 cut(s)	990
BsiHKAI	GWGCWC	1 cut(s)	159
BslFI	GGGAC	2 cut(s)	971, 1253
BslI	CCNNNNNNNGG	3 cut(s)	41, 226, 1249
BsmAI	GTCTC	2 cut(s)	348, 1214
BsmBI	CGTCTC	1 cut(s)	1214
BsmFI	GGGAC	2 cut(s)	971, 1253
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	1 cut(s)	990
Bso31I	GGTCTC	1 cut(s)	348
Bsp1286I	GDGCHC	3 cut(s)	85, 159, 608
Bsp143I	GATC	7 cut(s)	211, 766, 814, 829, 853, 868, 1142
Bsp19I	CCATGG	2 cut(s)	150, 225
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	1 cut(s)	990
BspCNI	CTCAG	1 cut(s)	825
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	4 cut(s)	148, 196, 218, 1241
BspMAI	CTGCAG	2 cut(s)	400, 471
BspPI	GGATC	1 cut(s)	761
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	773
BsrI	ACTGG	1 cut(s)	1254
BssECI	CCNNGG	5 cut(s)	150, 225, 347, 498, 1069
BssMI	GATC	7 cut(s)	211, 766, 814, 829, 853, 868, 1142
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	5 cut(s)	150, 225, 347, 498, 1069
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	2 cut(s)	36, 617
Bst4CI	ACNGT	2 cut(s)	209, 1244
Bst6I	CTCTTC	2 cut(s)	714, 962
BstAPI	GCANNNNNTGC	2 cut(s)	612, 787
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	2 cut(s)	800, 833
BstDSI	CCRYGG	2 cut(s)	150, 225
BstF5I	GGATG	4 cut(s)	127, 283, 649, 1054
BstKTI	GATC	7 cut(s)	214, 769, 817, 832, 856, 871, 1145
BstMAI	GTCTC	2 cut(s)	348, 1214
BstMBI	GATC	7 cut(s)	211, 766, 814, 829, 853, 868, 1142
BstMWI	GCNNNNNNNGC	2 cut(s)	612, 787
BstNI	CCWGG	2 cut(s)	36, 617
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	2 cut(s)	34, 615
BstSFI	CTRYAG	2 cut(s)	396, 467
BstSLI	GKGCMC	2 cut(s)	159, 608
BstV1I	GCAGC	3 cut(s)	364, 790, 1096
BstV2I	GAAGAC	1 cut(s)	1002
BstXI	CCANNNNNNTGG	1 cut(s)	505
BsuRI	GGCC	1 cut(s)	990
BtgI	CCRYGG	2 cut(s)	150, 225
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	4 cut(s)	127, 283, 649, 1054
BtsI	GCAGTG	2 cut(s)	545, 1133
BtsIMutI	CAGTG	3 cut(s)	545, 822, 1133
Cac8I	GCNNGC	1 cut(s)	268
CciI	TCATGA	1 cut(s)	817
Cfr13I	GGNCC	3 cut(s)	147, 216, 1240
CspCI	CAANNNNNGTGG	2 cut(s)	1109, 1144
CviAII	CATG	9 cut(s)	151, 199, 226, 505, 524, 592, 818, 848, 923
DdeI	CTNAG	2 cut(s)	800, 833
DpnI	GATC	7 cut(s)	213, 768, 816, 831, 855, 870, 1144
DpnII	GATC	7 cut(s)	211, 766, 814, 829, 853, 868, 1142
DraIII	CACNNNGTG	1 cut(s)	926
Eam1104I	CTCTTC	2 cut(s)	714, 962
EarI	CTCTTC	2 cut(s)	714, 962
Eco130I	CCWWGG	5 cut(s)	150, 225, 347, 498, 1069
Eco24I	GRGCYC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	3 cut(s)	147, 216, 1240
Eco57I	CTGAAG	1 cut(s)	1280
EcoRII	CCWGG	2 cut(s)	34, 615
EcoT14I	CCWWGG	5 cut(s)	150, 225, 347, 498, 1069
EcoT22I	ATGCAT	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	5 cut(s)	150, 225, 347, 498, 1069
Esp3I	CGTCTC	1 cut(s)	1214
FaeI	CATG	9 cut(s)	154, 202, 229, 508, 527, 595, 821, 851, 926
FaqI	GGGAC	2 cut(s)	971, 1253
FatI	CATG	9 cut(s)	150, 198, 225, 504, 523, 591, 817, 847, 922
FauI	CCCGC	1 cut(s)	434
FbaI	TGATCA	2 cut(s)	814, 868
Fnu4HI	GCNGC	3 cut(s)	353, 779, 1110
FokI	GGATG	4 cut(s)	114, 290, 656, 1041
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	3 cut(s)	353, 779, 1110
GluI	GCNGC	3 cut(s)	353, 779, 1110
GsaI	CCCAGC	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	990
Hin1II	CATG	9 cut(s)	154, 202, 229, 508, 527, 595, 821, 851, 926
HindIII	AAGCTT	1 cut(s)	1283
HinfI	GANTC	6 cut(s)	31, 166, 745, 959, 1081, 1136
HphI	GGTGA	5 cut(s)	391, 425, 836, 938, 1085
Hpy166II	GTNNAC	4 cut(s)	157, 366, 752, 1247
Hpy188I	TCNGA	6 cut(s)	93, 132, 216, 390, 430, 834
Hpy188III	TCNNGA	7 cut(s)	59, 170, 764, 818, 857, 872, 1140
Hpy8I	GTNNAC	4 cut(s)	157, 366, 752, 1247
HpyAV	CCTTC	3 cut(s)	331, 444, 1315
HpyCH4III	ACNGT	2 cut(s)	209, 1244
HpyCH4IV	ACGT	1 cut(s)	1207
HpyCH4V	TGCA	8 cut(s)	67, 157, 202, 255, 398, 469, 778, 790
HpyF10VI	GCNNNNNNNGC	2 cut(s)	612, 787
HpyF3I	CTNAG	2 cut(s)	800, 833
HpySE526I	ACGT	1 cut(s)	1207
Hsp92II	CATG	9 cut(s)	154, 202, 229, 508, 527, 595, 821, 851, 926
Ksp22I	TGATCA	2 cut(s)	814, 868
Kzo9I	GATC	7 cut(s)	211, 766, 814, 829, 853, 868, 1142
Lsp1109I	GCAGC	3 cut(s)	364, 790, 1096
LweI	GCATC	1 cut(s)	850
MaeII	ACGT	1 cut(s)	1207
MaeIII	GTNAC	2 cut(s)	1034, 1116
MalI	GATC	7 cut(s)	213, 768, 816, 831, 855, 870, 1144
MboI	GATC	7 cut(s)	211, 766, 814, 829, 853, 868, 1142
MboII	GAAGA	8 cut(s)	346, 459, 731, 875, 979, 1007, 1169, 1273
MhlI	GDGCHC	3 cut(s)	85, 159, 608
MluCI	AATT	6 cut(s)	551, 1062, 1173, 1193, 1223, 1310
MlyI	GAGTC	1 cut(s)	953
Mph1103I	ATGCAT	1 cut(s)	204
MseI	TTAA	5 cut(s)	564, 585, 659, 695, 1002
MslI	CAYNNNNRTG	4 cut(s)	207, 538, 846, 849
MspR9I	CCNGG	2 cut(s)	36, 617
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	2 cut(s)	36, 617
MwoI	GCNNNNNNNGC	2 cut(s)	612, 787
NcoI	CCATGG	2 cut(s)	150, 225
NdeII	GATC	7 cut(s)	211, 766, 814, 829, 853, 868, 1142
NlaIII	CATG	9 cut(s)	154, 202, 229, 508, 527, 595, 821, 851, 926
NlaIV	GGNNCC	4 cut(s)	148, 196, 218, 1241
NmeAIII	GCCGAG	2 cut(s)	242, 309
NsiI	ATGCAT	1 cut(s)	204
NspI	RCATGY	1 cut(s)	595
OliI	CACNNNNGTG	1 cut(s)	538
PagI	TCATGA	1 cut(s)	817
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	5 cut(s)	31, 166, 745, 1081, 1136
PkrI	GCNGC	3 cut(s)	354, 780, 1111
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
Psp6I	CCWGG	2 cut(s)	34, 615
PspFI	CCCAGC	1 cut(s)	595
PspGI	CCWGG	2 cut(s)	34, 615
PspN4I	GGNNCC	4 cut(s)	148, 196, 218, 1241
PspPI	GGNCC	3 cut(s)	147, 216, 1240
PsrI	GAACNNNNNNTAC	4 cut(s)	1027, 1059, 1152, 1184
PstI	CTGCAG	2 cut(s)	400, 471
RseI	CAYNNNNRTG	4 cut(s)	207, 538, 846, 849
SaqAI	TTAA	5 cut(s)	564, 585, 659, 695, 1002
SatI	GCNGC	3 cut(s)	353, 779, 1110
Sau3AI	GATC	7 cut(s)	211, 766, 814, 829, 853, 868, 1142
Sau96I	GGNCC	3 cut(s)	147, 216, 1240
SchI	GAGTC	1 cut(s)	953
ScrFI	CCNGG	2 cut(s)	36, 617
SduI	GDGCHC	3 cut(s)	85, 159, 608
SfaNI	GCATC	1 cut(s)	850
SfcI	CTRYAG	2 cut(s)	396, 467
SinI	GGWCC	3 cut(s)	147, 216, 1240
SmiMI	CAYNNNNRTG	4 cut(s)	207, 538, 846, 849
SmlI	CTYRAG	2 cut(s)	1211, 1286
SmoI	CTYRAG	2 cut(s)	1211, 1286
Sse9I	AATT	6 cut(s)	551, 1062, 1173, 1193, 1223, 1310
SsiI	CCGC	1 cut(s)	441
SspI	AATATT	2 cut(s)	693, 942
StyD4I	CCNGG	2 cut(s)	34, 615
StyI	CCWWGG	5 cut(s)	150, 225, 347, 498, 1069
TaaI	ACNGT	2 cut(s)	209, 1244
TaiI	ACGT	1 cut(s)	1210
TaqI	TCGA	1 cut(s)	164
TasI	AATT	6 cut(s)	551, 1062, 1173, 1193, 1223, 1310
TfiI	GAWTC	5 cut(s)	31, 166, 745, 1081, 1136
Tru1I	TTAA	5 cut(s)	564, 585, 659, 695, 1002
Tru9I	TTAA	5 cut(s)	564, 585, 659, 695, 1002
TscAI	CASTG	3 cut(s)	545, 829, 1133
TseI	GCWGC	3 cut(s)	352, 778, 1109
TspDTI	ATGAA	3 cut(s)	732, 876, 1295
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	3 cut(s)	545, 829, 1133
VneI	GTGCAC	1 cut(s)	155
VpaK11BI	GGWCC	3 cut(s)	147, 216, 1240
XapI	RAATTY	3 cut(s)	551, 1173, 1223
XceI	RCATGY	1 cut(s)	595
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.