MD03G1276700.v1.1

Protein TRANSPORT INHIBITOR RESPONSE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011947
Physical Location & Seq
Reverse (-)
35919768 .. 35923452
3685 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1276700.v1.1.491

Sequence Viewer

Length: 1764 bp
ATGCGGGAAATGCAGAGAATGGTGAACTCGTTTCCCGAGGAGGTTCTGGAGTACGTGTTCTCGTTCATACAGACTGACCAGGACCGGAACTCGATCTCGACGGTGTGCAAGTCGTGGTACGAGATCGAACGGTGGTGCAGGCGGAGGATTTTCATCGGGAACTGCTACGCCGTCAGCCCCAGGATGCTGATCAGGCGGTTCCCGGACGTTAGATCCATTGAGCTCAAAGGAAAGCCTCACTTCGCCGACTTCAATCTGGTCCCGGAAGGCTGGGGTGGGTACGTGTACCCTTGGATCGCCGCCATGGCCAGCGCCTACCCTTGGCTTGAAGAGATCAAGCTCAAGAGGATGGTCGTCACCGACGAGACCTTGGAGCTGATTGCCAAGTCCTTCAAGAATATGAAGCTCCTCGTGCTTTCGTCCTGTGAGGGATTCAGTACTGACGGACTCGCCTCCATTGCTGCCAATTGCAGGAATCTACGGGAGCTGGACTTGCATGAGAGCGATGTGGAGGACCTGAGTGGGCATTGGCTGAGCCATTTTCCTGATACATACACGTCACTTGTGTCCCTTAACATTGCTTGCTTGGGGTCTGAGTTGAGTTTCTCTGCCCTGGAGCGCCTGGTGGCTAGGTGTCCCAACCTGAGGAGTCTCCGGCTCAATCGTTCCGTGCCTCTTGACAGGCTAGCCAATCTACTTCGCCTGGCACCTAGGCTGACTGAGTTAGGCACAGGGGCCTACTCAGCTGAGTTGCGGCCTGATGTCTTCGCAATCCTATCACGTGCCATCTCAGGATGCAAGGAACTCAAGAGCCTATCTGGATTTTGGGATGTGGTACCAACATATCTTCCAGCTATTTATTCTATCTGCCCTGGGCTAACATCACTAAATTTGAGTTATTCCACAATTCAAAGCCCGGATCTTGTAAAGCTTGTTAGCCAATGCCCGAATCTGCAGCGCCTCTGGGTATTGGATTACATTGAAGATGTTGGCCTTGATGCCCTGGCGGAATCTTGCAAGGATCTACGAGAGTTAAGGGTGTTTCCCTCGGATCCATTTGTGGTGGAACCAAATGTGTCCTTGACAGAGCAGGGCCTCATATCTGTTTCTGAGGGCTGTCCAAAGCTCCACTCAGTTCTGTACTTCTGCCGGCAAATGTCCAATGATGCATTAATCACCATTGCTAGGAACCAGCCTAACTTTACATGTTTTCGTCTTTGTATAATTGAGCCCAAAATTCCCGACTACCTGACCCTTCAGCCCCTTGATGTGGGTTTTGGGGCCATTGTTGAGAACTGCAAGAATCTCCGGCGATTGTCCGTTTCTGGTCTACTAACTGATCAAGCATTTGATTATATCGGAACCTATGGTAAAAAGTTGGAGATGCTGTCTTTAGCCTTTGCCGGAGATAGTGACTTGGGGCTTCATCATATATTGTCTGGGTGCGATAATCTTCGGAAATTGGAGATCAGGGATTGTCCTTTTGGTGACAAGGCTCTTTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCTTCATGCTCAGTGAGTTATGGAGCATGTAAGCTACTTGGCCAGAGGTTGCCGAGGCTAAATGTTGAAGTTATTGACGAGAGGGGGCACCCAGAATCCAGGCCGGAGAGCTCTCCCGTTGAGAAGCTCTACATCTATAGGTCCGTTGCAGGGCCAAGGTTTGACATGCCTGGTTTTGTTTGGACCATGGATGAAGATTCGGCATTGAGGGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

588

Amino Acids

66.2

Weight (kDa)

5.79

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 10 - 48 4e-17 F-box
Transp_inhibit PF18791 68 - 114 3.4e-26 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62980
fragaria_vesca FvH4_2g24840
malus_domestica MD03G1276700.v1.1 MD11G1299000.v1.1
prunus_persica Prupe.8G253300_v2.0.a1
pyrus_communis pycom03g22040 pycom10g25620 pycom11g26270 pycom17g00400
rosa_chinensis RchiOBHm_Chr6g0292661
rosa_laevigata RLG00000011999
rosa_multiflora Rmu_sc0000515.1_g000020
rosa_roxburghii Rroxscaffold_7G00174780
rosa_rugosa Rorug06G0228900
rosa_samantha Rh6AG342200 Rh6BG349500 Rh6CG356400 Rh6DG342500
rosa_wichuraiana Rw6G029830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 835
AccB1I GGYRCC 3 cut(s) 706, 835, 1632
AccI GTMKAC 1 cut(s) 1330
AciI CCGC 6 cut(s) 4, 142, 196, 300, 754, 1007
AclWI GGATC 7 cut(s) 207, 302, 927, 1029, 1046, 1059, 1527
AcoI YGGCCR 3 cut(s) 306, 1503, 1585
AcsI RAATTY 2 cut(s) 889, 1236
AcuI CTGAAG 1 cut(s) 1241
AcvI CACGTG 1 cut(s) 782
AfaI GTAC 7 cut(s) 53, 119, 281, 287, 439, 837, 1142
AfiI CCNNNNNNNGG 6 cut(s) 321, 471, 645, 1185, 1270, 1695
AflIII ACRYGT 4 cut(s) 54, 282, 555, 1205
AgsI TTSAA 6 cut(s) 253, 329, 394, 911, 983, 1613
AjiI CACGTC 1 cut(s) 558
AjnI CCWGG 9 cut(s) 78, 179, 612, 621, 702, 871, 1002, 1643, 1714
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
Alw21I GWGCWC 2 cut(s) 225, 1658
Alw26I GTCTC 3 cut(s) 359, 656, 1517
AlwI GGATC 7 cut(s) 207, 302, 927, 1029, 1046, 1059, 1527
Ama87I CYCGRG 1 cut(s) 35
ApeKI GCWGC 3 cut(s) 461, 955, 1511
ApoI RAATTY 2 cut(s) 889, 1236
AseI ATTAAT 1 cut(s) 1172
Asp718I GGTACC 1 cut(s) 835
AspA2I CCTAGG 1 cut(s) 710
AspLEI GCGC 3 cut(s) 314, 621, 960
AspS9I GGNCC 9 cut(s) 82, 259, 514, 735, 1093, 1281, 1686, 1697, 1728
AsuC2I CCSGG 3 cut(s) 203, 263, 917
AsuHPI GGTGA 4 cut(s) 34, 349, 1168, 1499
AsuNHI GCTAGC 1 cut(s) 685
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 5 cut(s) 82, 259, 514, 1686, 1728
AvrII CCTAGG 1 cut(s) 710
AxyI CCTNAGG 1 cut(s) 644
BaeGI GKGCMC 1 cut(s) 1635
BalI TGGCCA 3 cut(s) 308, 1505, 1587
BamHI GGATCC 1 cut(s) 1051
BanI GGYRCC 3 cut(s) 706, 835, 1632
BanII GRGCYC 3 cut(s) 225, 1233, 1658
BauI CACGAG 1 cut(s) 410
BbrPI CACGTG 1 cut(s) 782
BbsI GAAGAC 2 cut(s) 757, 1539
Bbv12I GWGCWC 2 cut(s) 225, 1658
BbvI GCAGC 3 cut(s) 448, 967, 1498
BccI CCATC 2 cut(s) 343, 794
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 9 cut(s) 80, 181, 614, 623, 704, 873, 1004, 1645, 1716
BclI TGATCA 2 cut(s) 189, 1339
BcnI CCSGG 3 cut(s) 203, 263, 917
BcoDI GTCTC 3 cut(s) 359, 656, 1517
BfaI CTAG 4 cut(s) 630, 686, 711, 1185
BfmI CTRYAG 2 cut(s) 953, 1681
BfoI RGCGCY 3 cut(s) 315, 622, 961
BglI GCCNNNNNGGC 1 cut(s) 305
BisI GCNGC 5 cut(s) 300, 462, 755, 956, 1512
BlnI CCTAGG 1 cut(s) 710
BlpI GCTNAGC 1 cut(s) 533
BlsI GCNGC 5 cut(s) 301, 463, 756, 957, 1513
BmcAI AGTACT 1 cut(s) 439
Bme18I GGWCC 5 cut(s) 82, 259, 514, 1686, 1728
BmeT110I CYCGRG 1 cut(s) 35
BmgBI CACGTC 1 cut(s) 558
BmgT120I GGNCC 9 cut(s) 82, 259, 514, 735, 1093, 1281, 1686, 1697, 1728
BmsI GCATC 5 cut(s) 174, 785, 988, 1156, 1374
BmtI GCTAGC 1 cut(s) 689
BpiI GAAGAC 2 cut(s) 757, 1539
BpmI CTGGAG 3 cut(s) 68, 635, 1541
Bpu1102I GCTNAGC 1 cut(s) 533
BpuEI CTTGAG 2 cut(s) 326, 791
BpuMI CCSGG 3 cut(s) 203, 263, 917
BsaAI YACGTR 3 cut(s) 55, 283, 782
BsaBI GATNNNNATC 2 cut(s) 152, 188
BsaI GGTCTC 1 cut(s) 359
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 1373, 1403
Bsc4I CCNNNNNNNGG 6 cut(s) 321, 471, 645, 1185, 1270, 1695
Bse118I RCCGGY 1 cut(s) 1149
Bse21I CCTNAGG 1 cut(s) 644
Bse3DI GCAATG 3 cut(s) 456, 576, 1179
Bse8I GATNNNNATC 2 cut(s) 152, 188
BseBI CCWGG 9 cut(s) 80, 181, 614, 623, 704, 873, 1004, 1645, 1716
BseGI GGATG 6 cut(s) 189, 354, 800, 835, 1548, 1741
BseJI GATNNNNATC 2 cut(s) 152, 188
BseLI CCNNNNNNNGG 6 cut(s) 321, 471, 645, 1185, 1270, 1695
BseMI GCAATG 3 cut(s) 456, 576, 1179
BseRI GAGGAG 3 cut(s) 53, 398, 661
BseSI GKGCMC 1 cut(s) 1635
BseXI GCAGC 3 cut(s) 448, 967, 1498
BseYI CCCAGC 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 157
BshNI GGYRCC 3 cut(s) 706, 835, 1632
BsiHKAI GWGCWC 2 cut(s) 225, 1658
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 9 cut(s) 85, 203, 263, 655, 917, 1150, 1309, 1404, 1649
BslFI GGGAC 3 cut(s) 245, 553, 621
BslI CCNNNNNNNGG 6 cut(s) 321, 471, 645, 1185, 1270, 1695
BsmAI GTCTC 3 cut(s) 359, 656, 1517
BsmFI GGGAC 3 cut(s) 245, 553, 621
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 4 cut(s) 225, 1233, 1635, 1658
Bsp1720I GCTNAGC 1 cut(s) 533
Bsp19I CCATGG 2 cut(s) 303, 1731
BspACI CCGC 6 cut(s) 4, 142, 196, 300, 754, 1007
BspMAI CTGCAG 1 cut(s) 957
BspOI GCTAGC 1 cut(s) 689
BspPI GGATC 7 cut(s) 207, 302, 927, 1029, 1046, 1059, 1527
BspT107I GGYRCC 3 cut(s) 706, 835, 1632
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 3 cut(s) 456, 576, 1179
BsrFI RCCGGY 1 cut(s) 1149
BssAI RCCGGY 1 cut(s) 1149
BssSI CACGAG 1 cut(s) 410
BssT1I CCWWGG 7 cut(s) 290, 303, 320, 369, 710, 1700, 1731
Bst2BI CACGAG 1 cut(s) 410
Bst2UI CCWGG 9 cut(s) 80, 181, 614, 623, 704, 873, 1004, 1645, 1716
Bst4CI ACNGT 2 cut(s) 103, 132
Bst6I CTCTTC 1 cut(s) 324
BstBAI YACGTR 3 cut(s) 55, 283, 782
BstC8I GCNNGC 5 cut(s) 140, 310, 583, 687, 1151
BstDSI CCRYGG 2 cut(s) 303, 1731
BstF5I GGATG 6 cut(s) 189, 354, 800, 835, 1548, 1741
BstH2I RGCGCY 3 cut(s) 315, 622, 961
BstHHI GCGC 3 cut(s) 314, 621, 960
BstMAI GTCTC 3 cut(s) 359, 656, 1517
BstMWI GCNNNNNNNGC 9 cut(s) 10, 193, 305, 412, 458, 493, 743, 1502, 1511
BstNI CCWGG 9 cut(s) 80, 181, 614, 623, 704, 873, 1004, 1645, 1716
BstNSI RCATGY 3 cut(s) 1209, 1575, 1714
BstSFI CTRYAG 2 cut(s) 953, 1681
BstSLI GKGCMC 1 cut(s) 1635
BstV1I GCAGC 3 cut(s) 448, 967, 1498
BstV2I GAAGAC 2 cut(s) 757, 1539
BstX2I RGATCY 4 cut(s) 212, 919, 1021, 1051
BstYI RGATCY 4 cut(s) 212, 919, 1021, 1051
Bsu36I CCTNAGG 1 cut(s) 644
BtgI CCRYGG 2 cut(s) 303, 1731
BtgZI GCGATG 1 cut(s) 519
BtrI CACGTC 1 cut(s) 558
BtsCI GGATG 6 cut(s) 189, 354, 800, 835, 1548, 1741
BtsIMutI CAGTG 1 cut(s) 1563
Cac8I GCNNGC 5 cut(s) 140, 310, 583, 687, 1151
CfoI GCGC 3 cut(s) 314, 621, 960
Cfr10I RCCGGY 1 cut(s) 1149
Cfr13I GGNCC 9 cut(s) 82, 259, 514, 735, 1093, 1281, 1686, 1697, 1728
Csp6I GTAC 7 cut(s) 52, 118, 280, 286, 438, 836, 1141
CviAII CATG 7 cut(s) 304, 497, 1206, 1551, 1572, 1711, 1732
CviQI GTAC 7 cut(s) 52, 118, 280, 286, 438, 836, 1141
EaeI YGGCCR 3 cut(s) 306, 1503, 1585
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
EciI GGCGGA 2 cut(s) 157, 1022
Ecl136II GAGCTC 2 cut(s) 223, 1656
Eco130I CCWWGG 7 cut(s) 290, 303, 320, 369, 710, 1700, 1731
Eco24I GRGCYC 3 cut(s) 225, 1233, 1658
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 5 cut(s) 82, 259, 514, 1686, 1728
Eco53kI GAGCTC 2 cut(s) 223, 1656
Eco57I CTGAAG 1 cut(s) 1241
Eco72I CACGTG 1 cut(s) 782
Eco81I CCTNAGG 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 35
EcoICRI GAGCTC 2 cut(s) 223, 1656
EcoO109I RGGNCCY 3 cut(s) 514, 735, 1093
EcoRII CCWGG 9 cut(s) 78, 179, 612, 621, 702, 871, 1002, 1643, 1714
EcoT14I CCWWGG 7 cut(s) 290, 303, 320, 369, 710, 1700, 1731
EcoT22I ATGCAT 1 cut(s) 1171
EcoT38I GRGCYC 3 cut(s) 225, 1233, 1658
ErhI CCWWGG 7 cut(s) 290, 303, 320, 369, 710, 1700, 1731
FaeI CATG 7 cut(s) 307, 500, 1209, 1554, 1575, 1714, 1735
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 3 cut(s) 245, 553, 621
FatI CATG 7 cut(s) 303, 496, 1205, 1550, 1571, 1710, 1731
FbaI TGATCA 2 cut(s) 189, 1339
FblI GTMKAC 1 cut(s) 1330
Fnu4HI GCNGC 5 cut(s) 300, 462, 755, 956, 1512
FokI GGATG 6 cut(s) 196, 361, 807, 842, 1555, 1748
FriOI GRGCYC 3 cut(s) 225, 1233, 1658
Fsp4HI GCNGC 5 cut(s) 300, 462, 755, 956, 1512
FspBI CTAG 4 cut(s) 630, 686, 711, 1185
GlaI GCGC 3 cut(s) 313, 620, 959
GluI GCNGC 5 cut(s) 300, 462, 755, 956, 1512
GsaI CCCAGC 1 cut(s) 274
GsuI CTGGAG 3 cut(s) 68, 635, 1541
HaeII RGCGCY 3 cut(s) 315, 622, 961
HapII CCGG 9 cut(s) 85, 203, 263, 655, 917, 1150, 1309, 1404, 1649
HhaI GCGC 3 cut(s) 314, 621, 960
Hin1II CATG 7 cut(s) 307, 500, 1209, 1554, 1575, 1714, 1735
Hin6I GCGC 3 cut(s) 312, 619, 958
HinP1I GCGC 3 cut(s) 312, 619, 958
HindIII AAGCTT 1 cut(s) 929
HinfI GANTC 9 cut(s) 432, 447, 475, 649, 949, 1010, 1303, 1640, 1742
HpaII CCGG 9 cut(s) 85, 203, 263, 655, 917, 1150, 1309, 1404, 1649
HphI GGTGA 4 cut(s) 34, 349, 1168, 1499
Hpy166II GTNNAC 3 cut(s) 25, 286, 1331
Hpy188I TCNGA 5 cut(s) 595, 1051, 1111, 1361, 1458
Hpy8I GTNNAC 3 cut(s) 25, 286, 1331
Hpy99I CGWCG 2 cut(s) 103, 365
HpyAV CCTTC 3 cut(s) 260, 400, 1265
HpyCH4III ACNGT 2 cut(s) 103, 132
HpyCH4IV ACGT 5 cut(s) 54, 207, 282, 557, 781
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 193, 305, 412, 458, 493, 743, 1502, 1511
HpySE526I ACGT 5 cut(s) 54, 207, 282, 557, 781
Hsp92II CATG 7 cut(s) 307, 500, 1209, 1554, 1575, 1714, 1735
HspAI GCGC 3 cut(s) 312, 619, 958
KpnI GGTACC 1 cut(s) 839
KroI GCCGGC 1 cut(s) 1149
KroNI GCCGGC 1 cut(s) 1151
Ksp22I TGATCA 2 cut(s) 189, 1339
LmnI GCTCC 6 cut(s) 373, 411, 484, 616, 1131, 1568
Lsp1109I GCAGC 3 cut(s) 448, 967, 1498
LweI GCATC 5 cut(s) 174, 785, 988, 1156, 1374
MaeI CTAG 4 cut(s) 630, 686, 711, 1185
MaeII ACGT 5 cut(s) 54, 207, 282, 557, 781
MaeIII GTNAC 5 cut(s) 355, 558, 1412, 1487, 1756
MboII GAAGA 7 cut(s) 341, 757, 839, 995, 1445, 1539, 1751
MfeI CAATTG 1 cut(s) 466
MflI RGATCY 4 cut(s) 212, 919, 1021, 1051
MhlI GDGCHC 4 cut(s) 225, 1233, 1635, 1658
MlsI TGGCCA 3 cut(s) 308, 1505, 1587
MluCI AATT 6 cut(s) 466, 889, 906, 1224, 1236, 1460
MluNI TGGCCA 3 cut(s) 308, 1505, 1587
MlyI GAGTC 2 cut(s) 441, 658
MmeI TCCRAC 1 cut(s) 1359
Mox20I TGGCCA 3 cut(s) 308, 1505, 1587
Mph1103I ATGCAT 1 cut(s) 1171
MroNI GCCGGC 1 cut(s) 1149
MscI TGGCCA 3 cut(s) 308, 1505, 1587
MseI TTAA 3 cut(s) 573, 1034, 1172
Msp20I TGGCCA 3 cut(s) 308, 1505, 1587
MspA1I CMGCKG 1 cut(s) 746
MspI CCGG 9 cut(s) 85, 203, 263, 655, 917, 1150, 1309, 1404, 1649
MunI CAATTG 1 cut(s) 466
MvaI CCWGG 9 cut(s) 80, 181, 614, 623, 704, 873, 1004, 1645, 1716
MwoI GCNNNNNNNGC 9 cut(s) 10, 193, 305, 412, 458, 493, 743, 1502, 1511
NaeI GCCGGC 1 cut(s) 1151
NciI CCSGG 3 cut(s) 203, 263, 917
NcoI CCATGG 2 cut(s) 303, 1731
NgoMIV GCCGGC 1 cut(s) 1149
NheI GCTAGC 1 cut(s) 685
NlaIII CATG 7 cut(s) 307, 500, 1209, 1554, 1575, 1714, 1735
NmeAIII GCCGAG 1 cut(s) 1623
NmuCI GTSAC 4 cut(s) 355, 558, 1412, 1487
NsiI ATGCAT 1 cut(s) 1171
NspI RCATGY 3 cut(s) 1209, 1575, 1714
PasI CCCWGGG 1 cut(s) 872
PciI ACATGT 1 cut(s) 1205
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PdiI GCCGGC 1 cut(s) 1151
PfeI GAWTC 7 cut(s) 432, 475, 949, 1010, 1303, 1640, 1742
PfoI TCCNGGA 2 cut(s) 201, 261
PkrI GCNGC 5 cut(s) 301, 463, 756, 957, 1513
PleI GAGTC 2 cut(s) 441, 657
PmaCI CACGTG 1 cut(s) 782
PmlI CACGTG 1 cut(s) 782
PpsI GAGTC 2 cut(s) 441, 657
Ppu21I YACGTR 3 cut(s) 55, 283, 782
PpuMI RGGWCCY 1 cut(s) 514
PscI ACATGT 1 cut(s) 1205
PshBI ATTAAT 1 cut(s) 1172
Psp124BI GAGCTC 2 cut(s) 225, 1658
Psp5II RGGWCCY 1 cut(s) 514
Psp6I CCWGG 9 cut(s) 78, 179, 612, 621, 702, 871, 1002, 1643, 1714
PspCI CACGTG 1 cut(s) 782
PspFI CCCAGC 1 cut(s) 270
PspGI CCWGG 9 cut(s) 78, 179, 612, 621, 702, 871, 1002, 1643, 1714
PspPI GGNCC 9 cut(s) 82, 259, 514, 735, 1093, 1281, 1686, 1697, 1728
PspPPI RGGWCCY 1 cut(s) 514
PstI CTGCAG 1 cut(s) 957
PsuI RGATCY 4 cut(s) 212, 919, 1021, 1051
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 7 cut(s) 53, 119, 281, 287, 439, 837, 1142
RsaNI GTAC 7 cut(s) 52, 118, 280, 286, 438, 836, 1141
SacI GAGCTC 2 cut(s) 225, 1658
SaqAI TTAA 3 cut(s) 573, 1034, 1172
SatI GCNGC 5 cut(s) 300, 462, 755, 956, 1512
Sau96I GGNCC 9 cut(s) 82, 259, 514, 735, 1093, 1281, 1686, 1697, 1728
ScaI AGTACT 1 cut(s) 439
SchI GAGTC 2 cut(s) 441, 658
SduI GDGCHC 4 cut(s) 225, 1233, 1635, 1658
SfaNI GCATC 5 cut(s) 174, 785, 988, 1156, 1374
SfcI CTRYAG 2 cut(s) 953, 1681
SinI GGWCC 5 cut(s) 82, 259, 514, 1686, 1728
SmlI CTYRAG 2 cut(s) 341, 806
SmoI CTYRAG 2 cut(s) 341, 806
Sse9I AATT 6 cut(s) 466, 889, 906, 1224, 1236, 1460
SsiI CCGC 6 cut(s) 4, 142, 196, 300, 754, 1007
SspMI CTAG 4 cut(s) 630, 686, 711, 1185
SstI GAGCTC 2 cut(s) 225, 1658
StyI CCWWGG 7 cut(s) 290, 303, 320, 369, 710, 1700, 1731
TaaI ACNGT 2 cut(s) 103, 132
TaiI ACGT 5 cut(s) 57, 210, 285, 560, 784
TaqI TCGA 3 cut(s) 92, 98, 126
TasI AATT 6 cut(s) 466, 889, 906, 1224, 1236, 1460
TatI WGTACW 2 cut(s) 437, 1140
TauI GCSGC 2 cut(s) 302, 757
TfiI GAWTC 7 cut(s) 432, 475, 949, 1010, 1303, 1640, 1742
Tru1I TTAA 3 cut(s) 573, 1034, 1172
Tru9I TTAA 3 cut(s) 573, 1034, 1172
TscAI CASTG 1 cut(s) 1563
TseFI GTSAC 4 cut(s) 355, 558, 1412, 1487
TseI GCWGC 3 cut(s) 461, 955, 1511
Tsp45I GTSAC 4 cut(s) 355, 558, 1412, 1487
TspDTI ATGAA 6 cut(s) 55, 142, 416, 1415, 1539, 1752
TspGWI ACGGA 4 cut(s) 459, 658, 1309, 1678
TspRI CASTG 1 cut(s) 1563
VpaK11BI GGWCC 5 cut(s) 82, 259, 514, 1686, 1728
VspI ATTAAT 1 cut(s) 1172
XapI RAATTY 2 cut(s) 889, 1236
XceI RCATGY 3 cut(s) 1209, 1575, 1714
XmaJI CCTAGG 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 1330
XspI CTAG 4 cut(s) 630, 686, 711, 1185
ZrmI AGTACT 1 cut(s) 439
Zsp2I ATGCAT 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.