Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011947

Physical Location & Seq

Genomic Coordinates Forward (+)

27189452 .. 27190018

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g25620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGACTAATGCCGCTGTAGCAACCGTTGCACAAAATTTCCCTGATATCACCCACTTTCGTCTCTGCATAATGATCCCGGGGCAACCAGATTACATAACGAACGAGCCTATGGATGAGGCTTTTGGTGCAGTTGTGAAGAATTGCACTAAACTCCAACGGCTTTCAGTGTCAGGTTTATTGACTGACCATGCCTTCGAATACATTGGGATGTATGCTAAGAATTTGGAAAAGCTATCAGTAGTTTTCGCTGGAAAAAGTGATTTGGGGATGCAGTGTGTGCTGAAAGGTTGTCCAAAGCTCAAGAAACTTGAGATAAGGGACTGCCCGTTTGGGAACGAAGCTTTTCTCTCAGATATAGAGAAGTATGAATCCATGAGATCACTTTGGATGTCAGCCTGCAATGTGACAGTAAACGCCTGCCGGTTATTGGCAAGTCAGATGCCGAGATTGAATGTTGAGGTAATGAAGGATGAAGGGGATGATGACCGTGTGGCTGATAAAGTTTATGTTTACCGTTCTGTTGCTGGGCCAAGAAGGGATGCCCCGCCTTTTGTTCTTACTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

F-box-like LRR_6

Protein Analysis

189

Amino Acids

21.0

Weight (kDa)

6.14

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62980
fragaria_vesca	FvH4_2g24840
malus_domestica	MD03G1276700.v1.1 MD11G1299000.v1.1
prunus_persica	Prupe.8G253300_v2.0.a1
pyrus_communis	pycom03g22040 pycom10g25620 pycom11g26270 pycom17g00400
rosa_chinensis	RchiOBHm_Chr6g0292661
rosa_laevigata	RLG00000011999
rosa_multiflora	Rmu_sc0000515.1_g000020
rosa_roxburghii	Rroxscaffold_7G00174780
rosa_rugosa	Rorug06G0228900
rosa_samantha	Rh6AG342200 Rh6BG349500 Rh6CG356400 Rh6DG342500
rosa_wichuraiana	Rw6G029830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	12, 545
AclWI	GGATC	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	34, 220
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	1 cut(s)	451
AluBI	AGCT	3 cut(s)	232, 298, 341
AluI	AGCT	3 cut(s)	232, 298, 341
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	1 cut(s)	527
ApoI	RAATTY	2 cut(s)	34, 220
ArsI	GACNNNNNNTTYG	4 cut(s)	176, 208, 311, 343
Asp700I	GAANNNNTTC	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	527
AsuC2I	CCSGG	2 cut(s)	77, 78
AsuHPI	GGTGA	1 cut(s)	40
AsuII	TTCGAA	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	173
BcnI	CCSGG	2 cut(s)	77, 78
BcoDI	GTCTC	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	77, 78
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	527
BmrFI	CCNGG	2 cut(s)	77, 78
BmsI	GCATC	3 cut(s)	258, 429, 529
Bpu14I	TTCGAA	1 cut(s)	195
BpuEI	CTTGAG	2 cut(s)	284, 329
BpuMI	CCSGG	2 cut(s)	77, 78
BsaJI	CCNNGG	2 cut(s)	76, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	420
Bse3DI	GCAATG	1 cut(s)	406
BseDI	CCNNGG	2 cut(s)	76, 77
BseGI	GGATG	7 cut(s)	118, 213, 273, 393, 475, 484, 544
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	1 cut(s)	363
BseYI	CCCAGC	1 cut(s)	524
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	529
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	77, 421
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	529
BsoBI	CYCGRG	1 cut(s)	76
Bsp119I	TTCGAA	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	72, 377
BspACI	CCGC	2 cut(s)	12, 545
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	1 cut(s)	362
BspPI	GGATC	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	406
BsrFI	RCCGGY	1 cut(s)	420
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	76, 77
BssMI	GATC	2 cut(s)	72, 377
Bst4CI	ACNGT	4 cut(s)	25, 409, 488, 515
BstAPI	GCANNNNNTGC	2 cut(s)	26, 277
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	397, 418
BstDEI	CTNAG	2 cut(s)	216, 349
BstF5I	GGATG	7 cut(s)	118, 213, 273, 393, 475, 484, 544
BstKTI	GATC	2 cut(s)	75, 380
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	72, 377
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 26, 125, 277
BstSCI	CCNGG	2 cut(s)	75, 76
BstSFI	CTRYAG	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	529
BtsCI	GGATG	7 cut(s)	118, 213, 273, 393, 475, 484, 544
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	171, 278
Cac8I	GCNNGC	2 cut(s)	397, 418
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	527
Cfr9I	CCCGGG	1 cut(s)	76
CviAII	CATG	2 cut(s)	188, 373
CviJI	RGCY	9 cut(s)	106, 119, 160, 232, 298, 341, 395, 494, 529
CviKI_1	RGCY	9 cut(s)	106, 119, 160, 232, 298, 341, 395, 494, 529
DdeI	CTNAG	2 cut(s)	216, 349
DpnI	GATC	2 cut(s)	74, 379
DpnII	GATC	2 cut(s)	72, 377
Eco32I	GATATC	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	46
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	2 cut(s)	191, 376
FaiI	YATR	9 cut(s)	68, 95, 110, 189, 213, 356, 366, 374, 507
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	2 cut(s)	187, 372
FauI	CCCGC	1 cut(s)	552
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	7 cut(s)	125, 220, 280, 400, 482, 491, 551
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	529
HapII	CCGG	2 cut(s)	77, 421
Hin1II	CATG	2 cut(s)	191, 376
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	1 cut(s)	368
HpaII	CCGG	2 cut(s)	77, 421
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	412, 511
Hpy188I	TCNGA	3 cut(s)	352, 438, 566
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	2 cut(s)	412, 511
HpyAV	CCTTC	4 cut(s)	202, 460, 467, 528
HpyCH4III	ACNGT	4 cut(s)	25, 409, 488, 515
HpyCH4V	TGCA	6 cut(s)	29, 66, 128, 144, 271, 399
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 26, 125, 277
HpyF3I	CTNAG	2 cut(s)	216, 349
Hsp92II	CATG	2 cut(s)	191, 376
Kzo9I	GATC	2 cut(s)	72, 377
LpnPI	CCDG	9 cut(s)	54, 90, 99, 156, 234, 409, 430, 434, 510
LweI	GCATC	3 cut(s)	258, 429, 529
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	2 cut(s)	74, 379
MboI	GATC	2 cut(s)	72, 377
MboII	GAAGA	1 cut(s)	148
MluCI	AATT	3 cut(s)	34, 139, 220
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	2 cut(s)	109, 451
MroXI	GAANNNNTTC	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	2 cut(s)	77, 421
MspR9I	CCNGG	2 cut(s)	77, 78
MwoI	GCNNNNNNNGC	4 cut(s)	17, 26, 125, 277
NciI	CCSGG	2 cut(s)	77, 78
NdeII	GATC	2 cut(s)	72, 377
NlaIII	CATG	2 cut(s)	191, 376
NmeAIII	GCCGAG	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	403
NspV	TTCGAA	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	524
PspPI	GGNCC	1 cut(s)	527
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	72, 377
Sau96I	GGNCC	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	77, 78
SetI	ASST	6 cut(s)	175, 234, 289, 300, 343, 462
SfaNI	GCATC	3 cut(s)	258, 429, 529
SfcI	CTRYAG	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	195
SmaI	CCCGGG	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	299, 308
SmoI	CTYRAG	2 cut(s)	299, 308
Sse9I	AATT	3 cut(s)	34, 139, 220
SsiI	CCGC	2 cut(s)	12, 545
StyD4I	CCNGG	2 cut(s)	75, 76
TaaI	ACNGT	4 cut(s)	25, 409, 488, 515
TaqI	TCGA	1 cut(s)	195
TasI	AATT	3 cut(s)	34, 139, 220
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	368
TscAI	CASTG	2 cut(s)	171, 278
TseFI	GTSAC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	3 cut(s)	381, 479, 486
TspMI	CCCGGG	1 cut(s)	76
TspRI	CASTG	2 cut(s)	171, 278
XapI	RAATTY	2 cut(s)	34, 220
XmaI	CCCGGG	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.