Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011947

Physical Location & Seq

Genomic Coordinates Forward (+)

285250 .. 285834

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g00400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGACTAATGCTGCTCTCATAACCGTGGCCAAGAACTGCCCAAACTTTATACGTTTCAGGTTGTGCATCCTTGAGCCCACTAAACCTGACGCTGTTACCATGCGGCCCCTGGATGAAGGTTTTGGGGCAATTGTCCAGGCATGCAAGAATATTAGGCGTTTATCGCTCTCTGGCCATTTAACCGACCGGGTTTTCCTGTACATTGGAATGTATGCTGAGCAGCTTGAGATGCTGTCTATTGCATTTGCCGGGGACAGCGACAATGGTATGCTTTATGTGTTGAATGGATGCAAGAAGCTCCGGAAGCTTGAGATCAGGGACAGCCCCTTCGGAAACGAGGCACTTCTAAAGGACGTGGGAAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGCGAAGTTACCCTTGGAGGCTGCAAGGCACTAGCAAAGCAGATGCCAACACTGAATGTGGAGATCATAAATGAGAGTGATCAGATGGAGATTGGCGCCAATGATGAGCAACGAGTGGAGAAGATGTACCTCTATCGCACCCTAGTGGGGAAGAGAAGGGATACACCGGAATTTGTGTGGACTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000822 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0007154 GO:0007165 GO:0007275 GO:0008144 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009908 GO:0009987 GO:0010011 GO:0010033 GO:0010035 GO:0010152 GO:0010167 GO:0016020 GO:0019005 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031090 GO:0031461 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048527 GO:0048528 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071310 GO:0071365 GO:0071495 GO:0080022 GO:0090567 GO:0090696 GO:0098588 GO:0098805 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like LRR_6

Protein Analysis

195

Amino Acids

21.96

Weight (kDa)

7.54

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62980
fragaria_vesca	FvH4_2g24840
malus_domestica	MD03G1276700.v1.1 MD11G1299000.v1.1
prunus_persica	Prupe.8G253300_v2.0.a1
pyrus_communis	pycom03g22040 pycom10g25620 pycom11g26270 pycom17g00400
rosa_chinensis	RchiOBHm_Chr6g0292661
rosa_laevigata	RLG00000011999
rosa_multiflora	Rmu_sc0000515.1_g000020
rosa_roxburghii	Rroxscaffold_7G00174780
rosa_rugosa	Rorug06G0228900
rosa_samantha	Rh6AG342200 Rh6BG349500 Rh6CG356400 Rh6DG342500
rosa_wichuraiana	Rw6G029830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	491
AccIII	TCCGGA	1 cut(s)	300
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	2 cut(s)	27, 172
AcsI	RAATTY	1 cut(s)	566
AcyI	GRCGYC	1 cut(s)	492
AfaI	GTAC	2 cut(s)	200, 524
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	108, 135
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	3 cut(s)	223, 298, 307
AluI	AGCT	3 cut(s)	223, 298, 307
AlwI	GGATC	1 cut(s)	372
Aor13HI	TCCGGA	1 cut(s)	300
AoxI	GGCC	3 cut(s)	27, 104, 172
ApeKI	GCWGC	3 cut(s)	11, 220, 417
ApoI	RAATTY	1 cut(s)	566
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	2 cut(s)	188, 250
BalI	TGGCCA	2 cut(s)	29, 174
BanI	GGYRCC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	232, 404
BccI	CCATC	1 cut(s)	475
BciT130I	CCWGG	2 cut(s)	110, 137
BciVI	GTATCC	1 cut(s)	550
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	2 cut(s)	188, 250
BfaI	CTAG	2 cut(s)	428, 539
BfmI	CTRYAG	1 cut(s)	581
BfoI	RGCGCY	1 cut(s)	495
BfuI	GTATCC	1 cut(s)	550
BisI	GCNGC	4 cut(s)	12, 104, 221, 418
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	4 cut(s)	13, 105, 222, 419
Bme1390I	CCNGG	4 cut(s)	110, 137, 188, 250
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	107, 493
BmrFI	CCNGG	4 cut(s)	110, 137, 188, 250
BmsI	GCATC	4 cut(s)	75, 219, 278, 429
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	3 cut(s)	92, 245, 329
BpuMI	CCSGG	2 cut(s)	188, 250
BsaHI	GRCGYC	1 cut(s)	492
BsaJI	CCNNGG	4 cut(s)	24, 108, 249, 409
BsaWI	WCCGGW	2 cut(s)	300, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	110, 137
BseDI	CCNNGG	4 cut(s)	24, 108, 249, 409
BseGI	GGATG	4 cut(s)	66, 118, 293, 393
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	232, 404
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	3 cut(s)	29, 106, 174
BshNI	GGYRCC	1 cut(s)	491
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	4 cut(s)	187, 249, 301, 563
BslFI	GGGAC	2 cut(s)	266, 332
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmFI	GGGAC	2 cut(s)	266, 332
BsnI	GGCC	3 cut(s)	29, 106, 174
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp13I	TCCGGA	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	312, 377, 459, 475
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	3 cut(s)	29, 106, 174
BspCNI	CTCAG	1 cut(s)	208
BspEI	TCCGGA	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	107, 493
BspPI	GGATC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	491
BsrGI	TGTACA	1 cut(s)	198
BssECI	CCNNGG	4 cut(s)	24, 108, 249, 409
BssMI	GATC	4 cut(s)	312, 377, 459, 475
BssNI	GRCGYC	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	110, 137
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	542
BstACI	GRCGYC	1 cut(s)	492
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	4 cut(s)	66, 118, 293, 393
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	4 cut(s)	315, 380, 462, 478
BstMBI	GATC	4 cut(s)	312, 377, 459, 475
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 229, 304
BstNI	CCWGG	2 cut(s)	110, 137
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	4 cut(s)	108, 135, 186, 248
BstSFI	CTRYAG	1 cut(s)	581
BstV1I	GCAGC	2 cut(s)	232, 404
BsuI	GTATCC	1 cut(s)	550
BsuRI	GGCC	3 cut(s)	29, 106, 174
BtgI	CCRYGG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	4 cut(s)	66, 118, 293, 393
BtsIMutI	CAGTG	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	199, 523
CviAII	CATG	2 cut(s)	100, 141
CviJI	RGCY	9 cut(s)	29, 76, 106, 174, 223, 298, 307, 324, 417
CviKI_1	RGCY	9 cut(s)	29, 76, 106, 174, 223, 298, 307, 324, 417
CviQI	GTAC	2 cut(s)	199, 523
DdeI	CTNAG	1 cut(s)	216
DinI	GGCGCC	1 cut(s)	493
DpnI	GATC	4 cut(s)	314, 379, 461, 477
DpnII	GATC	4 cut(s)	312, 377, 459, 475
EaeI	YGGCCR	2 cut(s)	27, 172
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	108, 135
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	493
EheI	GGCGCC	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	2 cut(s)	103, 144
FaiI	YATR	9 cut(s)	20, 50, 101, 142, 213, 269, 276, 366, 464
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FaqI	GGGAC	2 cut(s)	266, 332
FatI	CATG	2 cut(s)	99, 140
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	12, 104, 221, 418
FokI	GGATG	4 cut(s)	53, 125, 300, 400
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	12, 104, 221, 418
FspBI	CTAG	2 cut(s)	428, 539
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	4 cut(s)	12, 104, 221, 418
HaeII	RGCGCY	1 cut(s)	495
HaeIII	GGCC	3 cut(s)	29, 106, 174
HapII	CCGG	4 cut(s)	187, 249, 301, 563
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	2 cut(s)	103, 144
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	1 cut(s)	577
HpaII	CCGG	4 cut(s)	187, 249, 301, 563
Hpy166II	GTNNAC	1 cut(s)	576
Hpy188I	TCNGA	2 cut(s)	332, 480
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	1 cut(s)	576
HpyAV	CCTTC	3 cut(s)	110, 337, 546
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	52, 354
HpyCH4V	TGCA	5 cut(s)	66, 144, 242, 291, 420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 229, 304
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	2 cut(s)	52, 354
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	103, 144
HspAI	GCGC	1 cut(s)	492
KasI	GGCGCC	1 cut(s)	491
Kpn2I	TCCGGA	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	4 cut(s)	312, 377, 459, 475
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	2 cut(s)	232, 404
LweI	GCATC	4 cut(s)	75, 219, 278, 429
MaeI	CTAG	2 cut(s)	428, 539
MaeII	ACGT	2 cut(s)	52, 354
MaeIII	GTNAC	2 cut(s)	94, 403
MalI	GATC	4 cut(s)	314, 379, 461, 477
MboI	GATC	4 cut(s)	312, 377, 459, 475
MboII	GAAGA	2 cut(s)	529, 559
MfeI	CAATTG	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	2 cut(s)	29, 174
MluCI	AATT	2 cut(s)	129, 566
MluNI	TGGCCA	2 cut(s)	29, 174
Mly113I	GGCGCC	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	571
MnlI	CCTC	3 cut(s)	331, 407, 536
Mox20I	TGGCCA	2 cut(s)	29, 174
MroI	TCCGGA	1 cut(s)	300
MscI	TGGCCA	2 cut(s)	29, 174
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	3 cut(s)	23, 206, 539
Msp20I	TGGCCA	2 cut(s)	29, 174
MspI	CCGG	4 cut(s)	187, 249, 301, 563
MspR9I	CCNGG	4 cut(s)	110, 137, 188, 250
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	2 cut(s)	110, 137
MwoI	GCNNNNNNNGC	3 cut(s)	163, 229, 304
NarI	GGCGCC	1 cut(s)	492
NciI	CCSGG	2 cut(s)	188, 250
NdeII	GATC	4 cut(s)	312, 377, 459, 475
NlaIII	CATG	2 cut(s)	103, 144
NlaIV	GGNNCC	2 cut(s)	107, 493
NspI	RCATGY	1 cut(s)	144
OliI	CACNNNNGTG	1 cut(s)	539
PaeI	GCATGC	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	13, 105, 222, 419
PleI	GAGTC	1 cut(s)	571
PluTI	GGCGCC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	571
Psp6I	CCWGG	2 cut(s)	108, 135
PspGI	CCWGG	2 cut(s)	108, 135
PspN4I	GGNNCC	2 cut(s)	107, 493
PspPI	GGNCC	1 cut(s)	105
RsaI	GTAC	2 cut(s)	200, 524
RsaNI	GTAC	2 cut(s)	199, 523
RseI	CAYNNNNRTG	3 cut(s)	23, 206, 539
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	4 cut(s)	12, 104, 221, 418
Sau3AI	GATC	4 cut(s)	312, 377, 459, 475
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	4 cut(s)	110, 137, 188, 250
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	9 cut(s)	55, 62, 88, 121, 225, 300, 309, 357, 528
SfaNI	GCATC	4 cut(s)	75, 219, 278, 429
SfcI	CTRYAG	1 cut(s)	581
SfoI	GGCGCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	3 cut(s)	23, 206, 539
SmlI	CTYRAG	3 cut(s)	71, 224, 308
SmoI	CTYRAG	3 cut(s)	71, 224, 308
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	129, 566
SsiI	CCGC	1 cut(s)	103
SspDI	GGCGCC	1 cut(s)	491
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	2 cut(s)	428, 539
StyD4I	CCNGG	4 cut(s)	108, 135, 186, 248
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	55, 357
TasI	AATT	2 cut(s)	129, 566
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	453
TseI	GCWGC	3 cut(s)	11, 220, 417
TspDTI	ATGAA	2 cut(s)	129, 381
TspRI	CASTG	1 cut(s)	453
XapI	RAATTY	1 cut(s)	566
XceI	RCATGY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	2 cut(s)	428, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.