Rh6BG349500

Protein TRANSPORT INHIBITOR RESPONSE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011947
Physical Location & Seq
Forward (+)
57981531 .. 57985376
3846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG349500.1

Sequence Viewer

Length: 1755 bp
ATGCTGAAAATGGAGAGGTCGTTCCCGGAGGAGGTGCTGGAGCACGTGTTCTCGTTCCTGCAGTCGGACGGCGACCGGAACTCGATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAGGATATTCGTTGGGAACTGCTACGCTGTGAGCCCTATGATTTTGATCAGACGGTTCCCAGACGTTAGATCCATCACGCTCAAAGGGAAGCCTCACTTCGCCGACTTCAATCTGGTCCCGGAGGGCTGGGGTGGCTACGTGTATCCCTGGATCGCCGCCATGGCCAGTGCTTATCCGTGGCTCGAGGAGATCAGGCTCAAGAGGATGGTCGTCACCGACGATAGCTTGGAGCTGATTGCCAAGTCTTTCAAGAATTTCAAGCTCCTCGTGCTTTCGTCCTGTGAGGGATTCAGTACCGATGGCCTTGCCTCCATTGCCGCTAATTGCAGGAATTTGCGGGAGTTGGACTTGCATGAGAGTGATGTGGAGGACCTGAGTGGGCATTGGCTGAGCCATTTTCCTGATACCTACACATCACTTGTCTCCCTTAACATTGCATGCTTGGGCTCTGAGGTTAGTTTCTCTGCCCTGGAGCGCCTGGTGGGTAGGTGTCCCAACCTGAGGAGTCTCAGGCTCAACCGTGCAGTGCCCCTTGACAGGCTATCTAATCTACTTAACCGTGCACCTCAGCTGGTTGAGTTGGGGACAGGGGCCTACTCAGCTGAATTGCGGTCTGATGTGTTGTCGAACTTATCAAGTGCCCTCTCGGCCTGCAAGGAACTCAAGAGCCTTTCTGGGTTTTGGGATGTGGTCCCAACTTATCTTCCAGCTGTGTATTCTATCTGCCCTGGGATAACATCACTGAATTTGAGCTACGCCATTATTCAAAGTCCTGACCTTATAAAGCTTGTCAGTCAATGCCCAAATTTGCAGCGCCTTTGGGTATTGGATTATATTGAAGATGTTGGCCTTGATGCCTTGGCGGCGTCTTGCAAGGATCTACGAGAGTTGAGGGTGTTTCCATCTGATCCGTTTGTGGCGGAAGCAAATGTGTCCTTGACAGAACGAGGCCTCATTTCTGTTTCTGAGGGCTGTCCAAAGCTACAGTCAGTTCTGTACTTCTGCCGACAAATGTCTAATGATGCATTGATGACCATTGCCAGGAATCAACCTAACTTTACTTGTTTTCGCCTTTGTATTATTGAGCCCCGAACTCCGGACTATCTCACGCATGAGCCACTTGATGTGGGTTTCGGGGCCATTGTTGAGCACTGCAAAGATCTCCGGCGCCTGTCTGTTTCTGGTCTGTTAACTGATCGCGCATTTGAGTACATTGGTACTTATGGCAAAAGGTTGGAGATGCTTTCGCTAGCCTTTGCTGGAGATTCTGATCTGGGACTTCATCATGTGCTATCGGGGTGTGATAATCTTCGGAAACTTGAGATTAGGGACTGTCCTTTTGGTGACAAGGCTCTTTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCTTCTTGCTCAGTGAGTTATGGAGCATGTAAGCTGCTAGGTCAGAAGTTGCCCCGGCTTAATGTGGAAGTTATTGACGAGAGGGGACACCCAGAATCGAGGCCGGAGAGCTGTCCTGTTGAGAAGCTCTATATATACAGGTCTGTTGCTGGTCCAAGGTTTGACATGCCTGGCTTTGTTTGGACCATGGATGAAAACTCTGCATTGAGGCTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

584

Amino Acids

65.55

Weight (kDa)

5.91

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 7 - 45 4.7e-18 F-box
F-box-like PF12937 9 - 39 5.5e-07 F-box-like
Transp_inhibit PF18791 65 - 111 9.2e-27 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62980
fragaria_vesca FvH4_2g24840
malus_domestica MD03G1276700.v1.1 MD11G1299000.v1.1
prunus_persica Prupe.8G253300_v2.0.a1
pyrus_communis pycom03g22040 pycom10g25620 pycom11g26270 pycom17g00400
rosa_chinensis RchiOBHm_Chr6g0292661
rosa_laevigata RLG00000011999
rosa_multiflora Rmu_sc0000515.1_g000020
rosa_roxburghii Rroxscaffold_7G00174780
rosa_rugosa Rorug06G0228900
rosa_samantha Rh6AG342200 Rh6BG349500 Rh6CG356400 Rh6DG342500
rosa_wichuraiana Rw6G029830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 917
AccB1I GGYRCC 1 cut(s) 1302
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 1 cut(s) 1335
AccIII TCCGGA 1 cut(s) 1231
AciI CCGC 7 cut(s) 121, 291, 453, 472, 745, 998, 1055
AclWI GGATC 5 cut(s) 198, 293, 1020, 1037, 1518
AcoI YGGCCR 2 cut(s) 297, 1494
AcsI RAATTY 4 cut(s) 388, 466, 880, 940
AcvI CACGTG 1 cut(s) 46
AcyI GRCGYC 2 cut(s) 1001, 1303
AfaI GTAC 5 cut(s) 110, 430, 1133, 1346, 1354
AfiI CCNNNNNNNGG 6 cut(s) 31, 64, 636, 672, 1176, 1231
AflIII ACRYGT 2 cut(s) 45, 273
AgsI TTSAA 5 cut(s) 244, 385, 394, 902, 974
AjnI CCWGG 6 cut(s) 281, 603, 612, 862, 1175, 1705
AloI GAACNNNNNNTCC 3 cut(s) 32, 37, 64
Alw21I GWGCWC 3 cut(s) 45, 700, 1287
Alw26I GTCTC 3 cut(s) 562, 647, 1508
Alw44I GTGCAC 1 cut(s) 696
AlwI GGATC 5 cut(s) 198, 293, 1020, 1037, 1518
Ama87I CYCGRG 1 cut(s) 317
Aor13HI TCCGGA 1 cut(s) 1231
AoxI GGCC 9 cut(s) 297, 436, 726, 783, 982, 1084, 1272, 1494, 1637
ApaLI GTGCAC 1 cut(s) 696
ApeKI GCWGC 3 cut(s) 946, 1502, 1570
ApoI RAATTY 4 cut(s) 388, 466, 880, 940
ArsI GACNNNNNNTTYG 4 cut(s) 1106, 1138, 1457, 1489
AspLEI GCGC 4 cut(s) 612, 951, 1305, 1337
AspS9I GGNCC 7 cut(s) 250, 505, 726, 826, 1272, 1688, 1719
AsuC2I CCSGG 3 cut(s) 26, 254, 1591
AsuHPI GGTGA 2 cut(s) 340, 1490
AsuNHI GCTAGC 1 cut(s) 1384
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 5 cut(s) 250, 505, 826, 1688, 1719
AxyI CCTNAGG 1 cut(s) 635
BaeGI GKGCMC 3 cut(s) 666, 700, 778
BalI TGGCCA 2 cut(s) 299, 1496
BanI GGYRCC 1 cut(s) 1302
BanII GRGCYC 3 cut(s) 170, 584, 1224
BauI CACGAG 1 cut(s) 401
BbrPI CACGTG 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 1530
Bbv12I GWGCWC 3 cut(s) 45, 700, 1287
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 3 cut(s) 958, 1489, 1557
BccI CCATC 4 cut(s) 215, 334, 428, 1045
BceAI ACGGC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BciT130I CCWGG 6 cut(s) 283, 605, 614, 864, 1177, 1707
BciVI GTATCC 1 cut(s) 288
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 3 cut(s) 26, 254, 1591
BcoDI GTCTC 3 cut(s) 562, 647, 1508
BfaI CTAG 2 cut(s) 1385, 1574
BfmI CTRYAG 2 cut(s) 59, 1118
BfoI RGCGCY 3 cut(s) 613, 952, 1306
BfuI GTATCC 1 cut(s) 288
BglI GCCNNNNNGGC 3 cut(s) 296, 782, 998
BglII AGATCT 1 cut(s) 1294
BisI GCNGC 6 cut(s) 291, 453, 947, 999, 1503, 1571
BlpI GCTNAGC 1 cut(s) 524
BlsI GCNGC 6 cut(s) 292, 454, 948, 1000, 1504, 1572
Bme1390I CCNGG 9 cut(s) 26, 254, 283, 605, 614, 864, 1177, 1591, 1707
Bme18I GGWCC 5 cut(s) 250, 505, 826, 1688, 1719
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 7 cut(s) 250, 505, 726, 826, 1272, 1688, 1719
BmiI GGNNCC 6 cut(s) 191, 252, 727, 828, 1273, 1304
BmrFI CCNGG 9 cut(s) 26, 254, 283, 605, 614, 864, 1177, 1591, 1707
BmsI GCATC 3 cut(s) 979, 1147, 1365
BmtI GCTAGC 1 cut(s) 1388
BoxI GACNNNNGTC 1 cut(s) 1147
BpiI GAAGAC 1 cut(s) 1530
BpmI CTGGAG 4 cut(s) 59, 626, 1416, 1532
Bpu10I CCTNAGC 1 cut(s) 702
Bpu1102I GCTNAGC 1 cut(s) 524
BpuEI CTTGAG 3 cut(s) 317, 782, 1475
BpuMI CCSGG 3 cut(s) 26, 254, 1591
BsaAI YACGTR 2 cut(s) 46, 274
BsaBI GATNNNNATC 2 cut(s) 179, 1404
BsaHI GRCGYC 2 cut(s) 1001, 1303
BsaWI WCCGGW 2 cut(s) 75, 1231
BsaXI ACNNNNNCTCC 4 cut(s) 5, 32, 35, 62
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 64, 636, 672, 1176, 1231
Bse1I ACTGG 1 cut(s) 300
Bse21I CCTNAGG 1 cut(s) 635
Bse3DI GCAATG 3 cut(s) 447, 567, 1170
Bse8I GATNNNNATC 2 cut(s) 179, 1404
BseAI TCCGGA 1 cut(s) 1231
BseBI CCWGG 6 cut(s) 283, 605, 614, 864, 1177, 1707
BseGI GGATG 4 cut(s) 345, 826, 1539, 1732
BseJI GATNNNNATC 2 cut(s) 179, 1404
BseLI CCNNNNNNNGG 6 cut(s) 31, 64, 636, 672, 1176, 1231
BseMI GCAATG 3 cut(s) 447, 567, 1170
BseMII CTCAG 9 cut(s) 500, 515, 576, 626, 658, 716, 747, 1092, 1560
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 5 cut(s) 44, 148, 335, 389, 652
BseSI GKGCMC 3 cut(s) 666, 700, 778
BseXI GCAGC 3 cut(s) 958, 1489, 1557
BseYI CCCAGC 1 cut(s) 261
BsgI GTGCAG 2 cut(s) 148, 678
Bsh1236I CGCG 1 cut(s) 1335
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 9 cut(s) 299, 438, 728, 785, 984, 1086, 1274, 1496, 1639
BshNI GGYRCC 1 cut(s) 1302
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 3 cut(s) 45, 700, 1287
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 7 cut(s) 26, 76, 254, 1232, 1300, 1591, 1640
BslFI GGGAC 7 cut(s) 236, 612, 733, 812, 1425, 1478, 1635
BslI CCNNNNNNNGG 6 cut(s) 31, 64, 636, 672, 1176, 1231
BsmAI GTCTC 3 cut(s) 562, 647, 1508
BsmFI GGGAC 7 cut(s) 236, 612, 733, 812, 1425, 1478, 1635
BsnI GGCC 9 cut(s) 299, 438, 728, 785, 984, 1086, 1274, 1496, 1639
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 8 cut(s) 45, 170, 584, 666, 700, 778, 1224, 1287
Bsp13I TCCGGA 1 cut(s) 1231
Bsp1720I GCTNAGC 1 cut(s) 524
Bsp19I CCATGG 2 cut(s) 294, 1722
BspACI CCGC 7 cut(s) 121, 291, 453, 472, 745, 998, 1055
BspANI GGCC 9 cut(s) 299, 438, 728, 785, 984, 1086, 1274, 1496, 1639
BspCNI CTCAG 9 cut(s) 501, 516, 577, 627, 657, 715, 746, 1093, 1559
BspEI TCCGGA 1 cut(s) 1231
BspFNI CGCG 1 cut(s) 1335
BspLI GGNNCC 6 cut(s) 191, 252, 727, 828, 1273, 1304
BspMAI CTGCAG 1 cut(s) 63
BspOI GCTAGC 1 cut(s) 1388
BspPI GGATC 5 cut(s) 198, 293, 1020, 1037, 1518
BspT107I GGYRCC 1 cut(s) 1302
BsrBI CCGCTC 1 cut(s) 121
BsrDI GCAATG 3 cut(s) 447, 567, 1170
BsrI ACTGG 1 cut(s) 300
BssNI GRCGYC 2 cut(s) 1001, 1303
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 4 cut(s) 294, 993, 1691, 1722
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 6 cut(s) 283, 605, 614, 864, 1177, 1707
Bst4CI ACNGT 5 cut(s) 189, 656, 695, 1122, 1469
BstACI GRCGYC 2 cut(s) 1001, 1303
BstBAI YACGTR 2 cut(s) 46, 274
BstC8I GCNNGC 3 cut(s) 574, 787, 1386
BstDEI CTNAG 9 cut(s) 509, 524, 585, 635, 644, 702, 733, 1101, 1546
BstDSI CCRYGG 3 cut(s) 294, 311, 1722
BstF5I GGATG 4 cut(s) 345, 826, 1539, 1732
BstFNI CGCG 1 cut(s) 1335
BstH2I RGCGCY 3 cut(s) 613, 952, 1306
BstHHI GCGC 4 cut(s) 612, 951, 1305, 1337
BstMAI GTCTC 3 cut(s) 562, 647, 1508
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 9 cut(s) 267, 296, 403, 449, 734, 782, 998, 1493, 1502
BstNI CCWGG 6 cut(s) 283, 605, 614, 864, 1177, 1707
BstNSI RCATGY 3 cut(s) 576, 1566, 1705
BstPAI GACNNNNGTC 1 cut(s) 1147
BstSCI CCNGG 9 cut(s) 24, 252, 281, 603, 612, 862, 1175, 1589, 1705
BstSFI CTRYAG 2 cut(s) 59, 1118
BstSLI GKGCMC 3 cut(s) 666, 700, 778
BstUI CGCG 1 cut(s) 1335
BstV1I GCAGC 3 cut(s) 958, 1489, 1557
BstV2I GAAGAC 1 cut(s) 1530
BstX2I RGATCY 3 cut(s) 203, 1012, 1294
BstYI RGATCY 3 cut(s) 203, 1012, 1294
Bsu36I CCTNAGG 1 cut(s) 635
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 9 cut(s) 299, 438, 728, 785, 984, 1086, 1274, 1496, 1639
BtgI CCRYGG 3 cut(s) 294, 311, 1722
BtsCI GGATG 4 cut(s) 345, 826, 1539, 1732
BtsI GCAGTG 2 cut(s) 666, 1285
BtsIMutI CAGTG 5 cut(s) 307, 666, 875, 1285, 1554
Cac8I GCNNGC 3 cut(s) 574, 787, 1386
CfoI GCGC 4 cut(s) 612, 951, 1305, 1337
Cfr13I GGNCC 7 cut(s) 250, 505, 726, 826, 1272, 1688, 1719
CseI GACGC 1 cut(s) 990
Csp6I GTAC 5 cut(s) 109, 429, 1132, 1345, 1353
CviAII CATG 8 cut(s) 295, 488, 573, 1247, 1421, 1563, 1702, 1723
CviQI GTAC 5 cut(s) 109, 429, 1132, 1345, 1353
DdeI CTNAG 9 cut(s) 509, 524, 585, 635, 644, 702, 733, 1101, 1546
DinI GGCGCC 1 cut(s) 1304
EaeI YGGCCR 2 cut(s) 297, 1494
EciI GGCGGA 1 cut(s) 1070
Eco130I CCWWGG 4 cut(s) 294, 993, 1691, 1722
Eco147I AGGCCT 1 cut(s) 1086
Eco24I GRGCYC 3 cut(s) 170, 584, 1224
Eco47I GGWCC 5 cut(s) 250, 505, 826, 1688, 1719
Eco72I CACGTG 1 cut(s) 46
Eco81I CCTNAGG 1 cut(s) 635
Eco88I CYCGRG 1 cut(s) 317
EcoO109I RGGNCCY 2 cut(s) 505, 726
EcoRII CCWGG 6 cut(s) 281, 603, 612, 862, 1175, 1705
EcoT14I CCWWGG 4 cut(s) 294, 993, 1691, 1722
EcoT22I ATGCAT 1 cut(s) 1162
EcoT38I GRGCYC 3 cut(s) 170, 584, 1224
EgeI GGCGCC 1 cut(s) 1304
EheI GGCGCC 1 cut(s) 1304
ErhI CCWWGG 4 cut(s) 294, 993, 1691, 1722
FaeI CATG 8 cut(s) 298, 491, 576, 1250, 1424, 1566, 1705, 1726
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FaqI GGGAC 7 cut(s) 236, 612, 733, 812, 1425, 1478, 1635
FatI CATG 8 cut(s) 294, 487, 572, 1246, 1420, 1562, 1701, 1722
FauI CCCGC 1 cut(s) 465
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 6 cut(s) 291, 453, 947, 999, 1503, 1571
FokI GGATG 4 cut(s) 352, 833, 1546, 1739
FriOI GRGCYC 3 cut(s) 170, 584, 1224
Fsp4HI GCNGC 6 cut(s) 291, 453, 947, 999, 1503, 1571
FspBI CTAG 2 cut(s) 1385, 1574
GlaI GCGC 4 cut(s) 611, 950, 1304, 1336
GluI GCNGC 6 cut(s) 291, 453, 947, 999, 1503, 1571
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 4 cut(s) 59, 626, 1416, 1532
HaeII RGCGCY 3 cut(s) 613, 952, 1306
HaeIII GGCC 9 cut(s) 299, 438, 728, 785, 984, 1086, 1274, 1496, 1639
HapII CCGG 7 cut(s) 26, 76, 254, 1232, 1300, 1591, 1640
HgaI GACGC 1 cut(s) 990
HhaI GCGC 4 cut(s) 612, 951, 1305, 1337
Hin1I GRCGYC 2 cut(s) 1001, 1303
Hin1II CATG 8 cut(s) 298, 491, 576, 1250, 1424, 1566, 1705, 1726
Hin6I GCGC 4 cut(s) 610, 949, 1303, 1335
HinP1I GCGC 4 cut(s) 610, 949, 1303, 1335
HincII GTYRAC 1 cut(s) 1326
HindII GTYRAC 1 cut(s) 1326
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 5 cut(s) 423, 640, 1180, 1400, 1631
HpaI GTTAAC 1 cut(s) 1326
HpaII CCGG 7 cut(s) 26, 76, 254, 1232, 1300, 1591, 1640
HphI GGTGA 2 cut(s) 340, 1490
Hpy166II GTNNAC 2 cut(s) 698, 1326
Hpy188I TCNGA 9 cut(s) 67, 185, 586, 751, 1042, 1102, 1405, 1449, 1581
Hpy188III TCNNGA 6 cut(s) 334, 385, 536, 799, 908, 1232
Hpy8I GTNNAC 2 cut(s) 698, 1326
Hpy99I CGWCG 1 cut(s) 356
HpyCH4III ACNGT 5 cut(s) 189, 656, 695, 1122, 1469
HpyCH4IV ACGT 3 cut(s) 45, 198, 273
HpyF10VI GCNNNNNNNGC 9 cut(s) 267, 296, 403, 449, 734, 782, 998, 1493, 1502
HpyF3I CTNAG 9 cut(s) 509, 524, 585, 635, 644, 702, 733, 1101, 1546
HpySE526I ACGT 3 cut(s) 45, 198, 273
Hsp92I GRCGYC 2 cut(s) 1001, 1303
Hsp92II CATG 8 cut(s) 298, 491, 576, 1250, 1424, 1566, 1705, 1726
HspAI GCGC 4 cut(s) 610, 949, 1303, 1335
KasI GGCGCC 1 cut(s) 1302
Kpn2I TCCGGA 1 cut(s) 1231
Ksp22I TGATCA 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 1326
LmnI GCTCC 5 cut(s) 40, 364, 402, 607, 1559
Lsp1109I GCAGC 3 cut(s) 958, 1489, 1557
LweI GCATC 3 cut(s) 979, 1147, 1365
MaeI CTAG 2 cut(s) 1385, 1574
MaeII ACGT 3 cut(s) 45, 198, 273
MaeIII GTNAC 2 cut(s) 346, 1478
MbiI CCGCTC 1 cut(s) 121
MboII GAAGA 4 cut(s) 830, 986, 1436, 1530
MflI RGATCY 3 cut(s) 203, 1012, 1294
MhlI GDGCHC 8 cut(s) 45, 170, 584, 666, 700, 778, 1224, 1287
MlsI TGGCCA 2 cut(s) 299, 1496
MluCI AATT 6 cut(s) 388, 457, 466, 740, 880, 940
MluNI TGGCCA 2 cut(s) 299, 1496
Mly113I GGCGCC 1 cut(s) 1303
MlyI GAGTC 1 cut(s) 649
MmeI TCCRAC 3 cut(s) 45, 459, 1350
Mox20I TGGCCA 2 cut(s) 299, 1496
Mph1103I ATGCAT 1 cut(s) 1162
MroI TCCGGA 1 cut(s) 1231
MscI TGGCCA 2 cut(s) 299, 1496
MseI TTAA 4 cut(s) 564, 690, 1325, 1596
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 2 cut(s) 299, 1496
MspA1I CMGCKG 3 cut(s) 706, 737, 845
MspI CCGG 7 cut(s) 26, 76, 254, 1232, 1300, 1591, 1640
MspR9I CCNGG 9 cut(s) 26, 254, 283, 605, 614, 864, 1177, 1591, 1707
MvaI CCWGG 6 cut(s) 283, 605, 614, 864, 1177, 1707
MvnI CGCG 1 cut(s) 1335
MwoI GCNNNNNNNGC 9 cut(s) 267, 296, 403, 449, 734, 782, 998, 1493, 1502
NarI GGCGCC 1 cut(s) 1303
NciI CCSGG 3 cut(s) 26, 254, 1591
NcoI CCATGG 2 cut(s) 294, 1722
NheI GCTAGC 1 cut(s) 1384
NlaIII CATG 8 cut(s) 298, 491, 576, 1250, 1424, 1566, 1705, 1726
NlaIV GGNNCC 6 cut(s) 191, 252, 727, 828, 1273, 1304
NmeAIII GCCGAG 1 cut(s) 761
NmuCI GTSAC 2 cut(s) 346, 1478
NsiI ATGCAT 1 cut(s) 1162
NspI RCATGY 3 cut(s) 576, 1566, 1705
PaeI GCATGC 1 cut(s) 576
PaeR7I CTCGAG 1 cut(s) 317
PasI CCCWGGG 1 cut(s) 863
PceI AGGCCT 1 cut(s) 1086
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PfeI GAWTC 4 cut(s) 423, 1180, 1400, 1631
PfoI TCCNGGA 2 cut(s) 24, 252
PkrI GCNGC 6 cut(s) 292, 454, 948, 1000, 1504, 1572
PleI GAGTC 1 cut(s) 648
PluTI GGCGCC 1 cut(s) 1306
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
PpsI GAGTC 1 cut(s) 648
Ppu21I YACGTR 2 cut(s) 46, 274
PpuMI RGGWCCY 1 cut(s) 505
PshAI GACNNNNGTC 1 cut(s) 1147
PsiI TTATAA 1 cut(s) 917
Psp5II RGGWCCY 1 cut(s) 505
Psp6I CCWGG 6 cut(s) 281, 603, 612, 862, 1175, 1705
PspCI CACGTG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 6 cut(s) 281, 603, 612, 862, 1175, 1705
PspN4I GGNNCC 6 cut(s) 191, 252, 727, 828, 1273, 1304
PspPI GGNCC 7 cut(s) 250, 505, 726, 826, 1272, 1688, 1719
PspPPI RGGWCCY 1 cut(s) 505
PspXI VCTCGAGB 1 cut(s) 317
PstI CTGCAG 1 cut(s) 63
PsuI RGATCY 3 cut(s) 203, 1012, 1294
PvuII CAGCTG 3 cut(s) 706, 737, 845
RsaI GTAC 5 cut(s) 110, 430, 1133, 1346, 1354
RsaNI GTAC 5 cut(s) 109, 429, 1132, 1345, 1353
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 4 cut(s) 564, 690, 1325, 1596
SatI GCNGC 6 cut(s) 291, 453, 947, 999, 1503, 1571
Sau96I GGNCC 7 cut(s) 250, 505, 726, 826, 1272, 1688, 1719
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 9 cut(s) 26, 254, 283, 605, 614, 864, 1177, 1591, 1707
SduI GDGCHC 8 cut(s) 45, 170, 584, 666, 700, 778, 1224, 1287
SfaNI GCATC 3 cut(s) 979, 1147, 1365
SfcI CTRYAG 2 cut(s) 59, 1118
SfoI GGCGCC 1 cut(s) 1304
Sfr274I CTCGAG 1 cut(s) 317
SinI GGWCC 5 cut(s) 250, 505, 826, 1688, 1719
SlaI CTCGAG 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 4 cut(s) 317, 332, 797, 1454
SmoI CTYRAG 4 cut(s) 317, 332, 797, 1454
SphI GCATGC 1 cut(s) 576
Sse9I AATT 6 cut(s) 388, 457, 466, 740, 880, 940
SseBI AGGCCT 1 cut(s) 1086
SsiI CCGC 7 cut(s) 121, 291, 453, 472, 745, 998, 1055
SspDI GGCGCC 1 cut(s) 1302
SspMI CTAG 2 cut(s) 1385, 1574
StuI AGGCCT 1 cut(s) 1086
StyD4I CCNGG 9 cut(s) 24, 252, 281, 603, 612, 862, 1175, 1589, 1705
StyI CCWWGG 4 cut(s) 294, 993, 1691, 1722
TaaI ACNGT 5 cut(s) 189, 656, 695, 1122, 1469
TaiI ACGT 3 cut(s) 48, 201, 276
TaqI TCGA 5 cut(s) 83, 117, 318, 761, 1634
TasI AATT 6 cut(s) 388, 457, 466, 740, 880, 940
TatI WGTACW 2 cut(s) 1131, 1344
TauI GCSGC 3 cut(s) 293, 455, 1001
TfiI GAWTC 4 cut(s) 423, 1180, 1400, 1631
Tru1I TTAA 4 cut(s) 564, 690, 1325, 1596
Tru9I TTAA 4 cut(s) 564, 690, 1325, 1596
TscAI CASTG 5 cut(s) 307, 666, 882, 1292, 1554
TseFI GTSAC 2 cut(s) 346, 1478
TseI GCWGC 3 cut(s) 946, 1502, 1570
Tsp45I GTSAC 2 cut(s) 346, 1478
TspDTI ATGAA 2 cut(s) 1406, 1743
TspGWI ACGGA 2 cut(s) 300, 1035
TspRI CASTG 5 cut(s) 307, 666, 882, 1292, 1554
VneI GTGCAC 1 cut(s) 696
VpaK11BI GGWCC 5 cut(s) 250, 505, 826, 1688, 1719
XapI RAATTY 4 cut(s) 388, 466, 880, 940
XceI RCATGY 3 cut(s) 576, 1566, 1705
XhoI CTCGAG 1 cut(s) 317
XspI CTAG 2 cut(s) 1385, 1574
Zsp2I ATGCAT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.