MD04G1014700.v1.1

At2g17340-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0018109
Physical Location & Seq
Reverse (-)
1629373 .. 1633173
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1014700.v1.1.491

Sequence Viewer

Length: 432 bp
ATGAAGGCGCAGTGGCAACAACTGCAGAGAGCCTGCACCATCCCCTACAGATTTCCCTCCGACAATTCCCGAAAGCCCACTTCCACTGAGCTCTCTTGGATCGACCTCTTCTACAACTCCACCCCCTCCTTCAAGAAACGAGCTGAGTCTGGCGCATCGGTTCCCGACGCTCCGGCCAGACCTGAGAAATTTGCTCAGAGGTACACTGAGATACTGGAGGACTTGAAGAAGGATCTTGAGAGTCACAGCGGCCCGCCGGATTGCATTCTTCTTTGCAGACTTCGGGAGCAAGTTCTTAGGGAGTTGGGATTCCAAGATATATTCAAGAAAGTCAAGGATGAAGAGAATGCCAAGGCAATGTCCCTGTTTGAGAATGTAGTGGATCTTAATGAGATCTTAATGATGCTATTGAAGATGAAGTCAAGCGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

144

Amino Acids

16.5

Weight (kDa)

7.67

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 38 - 128 1.4e-10 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018109)

Species Orthologous Gene IDs
malus_domestica MD04G1014700.v1.1
rosa_multiflora Rmu_sc0000279.1_g000026 Rmu_sc0006888.1_g000020
rosa_roxburghii Rroxscaffold_6G00390430 Rroxscaffold_7G00195070 Rroxscaffold_7G00202140
rosa_rugosa Rorug07G0169300
rosa_samantha Rh1BG045600 Rh4DG156700 Rh7CG429500
rosa_wichuraiana Rw7G026210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 249, 254, 426
AclWI GGATC 3 cut(s) 107, 240, 390
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 1 cut(s) 203
AgsI TTSAA 4 cut(s) 133, 226, 325, 412
AluBI AGCT 2 cut(s) 91, 143
AluI AGCT 2 cut(s) 91, 143
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 3 cut(s) 107, 240, 390
AoxI GGCC 2 cut(s) 174, 250
ApoI RAATTY 1 cut(s) 188
AspLEI GCGC 2 cut(s) 10, 155
AspS9I GGNCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BccI CCATC 1 cut(s) 47
BfmI CTRYAG 2 cut(s) 23, 46
BglII AGATCT 1 cut(s) 393
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 2 cut(s) 164, 393
BpmI CTGGAG 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 2 cut(s) 39, 343
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 5 cut(s) 78, 135, 174, 198, 209
BseNI ACTGG 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 19
BshFI GGCC 2 cut(s) 176, 252
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 2 cut(s) 173, 257
BslFI GGGAC 1 cut(s) 346
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 2 cut(s) 264, 352
BsnI GGCC 2 cut(s) 176, 252
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 4 cut(s) 99, 232, 382, 393
BspACI CCGC 3 cut(s) 249, 254, 426
BspANI GGCC 2 cut(s) 176, 252
BspCNI CTCAG 5 cut(s) 79, 136, 175, 199, 208
BspLI GGNNCC 1 cut(s) 162
BspMAI CTGCAG 1 cut(s) 27
BspPI GGATC 3 cut(s) 107, 240, 390
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 4 cut(s) 99, 232, 382, 393
BssT1I CCWWGG 1 cut(s) 351
Bst6I CTCTTC 2 cut(s) 113, 336
BstAPI GCANNNNNTGC 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 34, 254
BstDEI CTNAG 6 cut(s) 87, 144, 183, 195, 207, 296
BstF5I GGATG 2 cut(s) 39, 343
BstHHI GCGC 2 cut(s) 10, 155
BstKTI GATC 4 cut(s) 102, 235, 385, 396
BstMBI GATC 4 cut(s) 99, 232, 382, 393
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSFI CTRYAG 2 cut(s) 23, 46
BstX2I RGATCY 3 cut(s) 232, 382, 393
BstYI RGATCY 3 cut(s) 232, 382, 393
BsuRI GGCC 2 cut(s) 176, 252
BtsCI GGATG 2 cut(s) 39, 343
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 3 cut(s) 17, 84, 204
Cac8I GCNNGC 2 cut(s) 34, 254
CfoI GCGC 2 cut(s) 10, 155
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 202
CviJI RGCY 6 cut(s) 32, 76, 91, 143, 176, 252
CviKI_1 RGCY 6 cut(s) 32, 76, 91, 143, 176, 252
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 6 cut(s) 87, 144, 183, 195, 207, 296
DpnI GATC 4 cut(s) 101, 234, 384, 395
DpnII GATC 4 cut(s) 99, 232, 382, 393
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 113, 336
EarI CTCTTC 2 cut(s) 113, 336
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 351
FaiI YATR 1 cut(s) 320
FaqI GGGAC 1 cut(s) 346
FauI CCCGC 2 cut(s) 261, 419
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 2 cut(s) 26, 350
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 250
GlaI GCGC 2 cut(s) 9, 154
GluI GCNGC 1 cut(s) 250
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 2 cut(s) 176, 252
HapII CCGG 2 cut(s) 173, 257
HgaI GACGC 1 cut(s) 176
HhaI GCGC 2 cut(s) 10, 155
Hin6I GCGC 2 cut(s) 8, 153
HinP1I GCGC 2 cut(s) 8, 153
HinfI GANTC 3 cut(s) 146, 241, 309
HpaII CCGG 2 cut(s) 173, 257
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 2 cut(s) 61, 198
Hpy188III TCNNGA 6 cut(s) 69, 133, 164, 236, 284, 325
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 2 cut(s) 139, 223
HpyCH4V TGCA 4 cut(s) 25, 36, 264, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 6 cut(s) 87, 144, 183, 195, 207, 296
HspAI GCGC 2 cut(s) 8, 153
Kzo9I GATC 4 cut(s) 99, 232, 382, 393
LmnI GCTCC 2 cut(s) 175, 286
LpnPI CCDG 8 cut(s) 46, 135, 186, 190, 195, 200, 270, 377
LweI GCATC 2 cut(s) 164, 393
MaeIII GTNAC 1 cut(s) 242
MalI GATC 4 cut(s) 101, 234, 384, 395
MboI GATC 4 cut(s) 99, 232, 382, 393
MboII GAAGA 5 cut(s) 100, 238, 260, 353, 424
MflI RGATCY 3 cut(s) 232, 382, 393
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 2 cut(s) 64, 188
MlyI GAGTC 2 cut(s) 155, 250
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 5 cut(s) 67, 116, 136, 192, 211
MseI TTAA 2 cut(s) 387, 398
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 2 cut(s) 173, 257
Mva1269I GAATGC 2 cut(s) 264, 352
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 4 cut(s) 99, 232, 382, 393
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 242
PctI GAATGC 2 cut(s) 264, 352
PfeI GAWTC 1 cut(s) 309
PkrI GCNGC 1 cut(s) 251
PleI GAGTC 2 cut(s) 154, 249
PpsI GAGTC 2 cut(s) 154, 249
Psp124BI GAGCTC 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 27
PsuI RGATCY 3 cut(s) 232, 382, 393
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 387, 398
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 4 cut(s) 99, 232, 382, 393
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 2 cut(s) 155, 250
SduI GDGCHC 1 cut(s) 93
SetI ASST 5 cut(s) 93, 108, 145, 184, 203
SfaNI GCATC 2 cut(s) 164, 393
SfcI CTRYAG 2 cut(s) 23, 46
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 64, 188
SsiI CCGC 3 cut(s) 249, 254, 426
SstI GAGCTC 1 cut(s) 93
StyI CCWWGG 1 cut(s) 351
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 64, 188
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 2 cut(s) 387, 398
Tru9I TTAA 2 cut(s) 387, 398
TscAI CASTG 3 cut(s) 17, 91, 211
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 17, 354, 431
TspRI CASTG 3 cut(s) 17, 91, 211
XapI RAATTY 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.