Rroxscaffold_7G00202140

At2g17340-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
50079354 .. 50085806
6453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202140.1

Sequence Viewer

Length: 471 bp
ATGGGTTGTGATTTGATGGCAGAGGTTCCCCTCAATGTCAATGTGTTTTCATGTCCCCTTTCTGCTTATTCAGCTACCGTAACAAGTGTGTCTTTGTGTTCTTCGCTTATTCAAGTTTGGTCCGTGCAGTCCGTTTGCATACCTGAAGATTCTGATACTAGCAAAGAGAATGTGGTGGATCTTAATGATGCTATTGAAGATGAATGCAAGCGGGTAGAGAATTTGATTAGAGTGGTATTTGCTAGGAACATACTTGATCTTGGTTCTGCATGGAATAGTGATGATCCTTCTAGCCCCGACTCTGTACCAAATGCTACTCCCGACAATGGAAAGACCACTCAGATCCCTAATACCATGGCCCCCGCAACTCCTACCGAGTCTCTTGTTTCGACCTCCTCTCGAAATGCAAGTAGTTATGCAAAAGATCTGCTCCTACCGAGATCAAAAATGATAATGGACCATGGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

16.73

Weight (kDa)

4.29

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018109)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 211, 363
AclWI GGATC 3 cut(s) 186, 278, 337
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 2 cut(s) 113, 197
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 3 cut(s) 186, 278, 337
AoxI GGCC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 220
AspS9I GGNCC 3 cut(s) 120, 358, 457
AvaII GGWCC 2 cut(s) 120, 457
BccI CCATC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 3 cut(s) 159, 243, 291
BglII AGATCT 1 cut(s) 424
Bme18I GGWCC 2 cut(s) 120, 457
BmgT120I GGNCC 3 cut(s) 120, 358, 457
BmiI GGNNCC 2 cut(s) 27, 360
BmsI GCATC 2 cut(s) 178, 455
BsaJI CCNNGG 2 cut(s) 354, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 326
BseDI CCNNGG 2 cut(s) 354, 460
BseGI GGATG 1 cut(s) 470
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 353
BseRI GAGGAG 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 146
BshFI GGCC 1 cut(s) 359
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 359
Bsp143I GATC 6 cut(s) 178, 256, 283, 342, 424, 440
Bsp19I CCATGG 2 cut(s) 354, 460
BspACI CCGC 2 cut(s) 211, 363
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 27, 360
BspPI GGATC 3 cut(s) 186, 278, 337
BssECI CCNNGG 2 cut(s) 354, 460
BssMI GATC 6 cut(s) 178, 256, 283, 342, 424, 440
BssT1I CCWWGG 2 cut(s) 354, 460
Bst4CI ACNGT 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 2 cut(s) 354, 460
BstF5I GGATG 1 cut(s) 470
BstKTI GATC 6 cut(s) 181, 259, 286, 345, 427, 443
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 6 cut(s) 178, 256, 283, 342, 424, 440
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstX2I RGATCY 3 cut(s) 178, 342, 424
BstYI RGATCY 3 cut(s) 178, 342, 424
BsuRI GGCC 1 cut(s) 359
BtgI CCRYGG 2 cut(s) 354, 460
BtsCI GGATG 1 cut(s) 470
Cac8I GCNNGC 1 cut(s) 209
Cfr13I GGNCC 3 cut(s) 120, 358, 457
Csp6I GTAC 1 cut(s) 305
CviAII CATG 4 cut(s) 51, 270, 355, 461
CviJI RGCY 3 cut(s) 74, 294, 359
CviKI_1 RGCY 3 cut(s) 74, 294, 359
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 339
DpnI GATC 6 cut(s) 180, 258, 285, 344, 426, 442
DpnII GATC 6 cut(s) 178, 256, 283, 342, 424, 440
Eco130I CCWWGG 2 cut(s) 354, 460
Eco47I GGWCC 2 cut(s) 120, 457
Eco57I CTGAAG 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 354, 460
ErhI CCWWGG 2 cut(s) 354, 460
FaeI CATG 4 cut(s) 54, 273, 358, 464
FaiI YATR 7 cut(s) 52, 140, 251, 271, 356, 417, 462
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FaqI GGGAC 1 cut(s) 39
FatI CATG 4 cut(s) 50, 269, 354, 460
FauI CCCGC 2 cut(s) 204, 370
FspBI CTAG 3 cut(s) 159, 243, 291
HaeIII GGCC 1 cut(s) 359
Hin1II CATG 4 cut(s) 54, 273, 358, 464
HinfI GANTC 3 cut(s) 149, 299, 377
Hpy188I TCNGA 2 cut(s) 154, 342
Hpy188III TCNNGA 2 cut(s) 320, 399
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 6 cut(s) 127, 138, 207, 269, 407, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 4 cut(s) 54, 273, 358, 464
Kzo9I GATC 6 cut(s) 178, 256, 283, 342, 424, 440
LmnI GCTCC 1 cut(s) 435
LpnPI CCDG 1 cut(s) 156
LweI GCATC 2 cut(s) 178, 455
MaeI CTAG 3 cut(s) 159, 243, 291
MaeIII GTNAC 1 cut(s) 79
MalI GATC 6 cut(s) 180, 258, 285, 344, 426, 442
MboI GATC 6 cut(s) 178, 256, 283, 342, 424, 440
MboII GAAGA 3 cut(s) 93, 158, 209
MflI RGATCY 3 cut(s) 178, 342, 424
MluCI AATT 1 cut(s) 220
MlyI GAGTC 2 cut(s) 293, 386
MnlI CCTC 4 cut(s) 16, 41, 403, 406
MseI TTAA 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 71
NcoI CCATGG 2 cut(s) 354, 460
NdeII GATC 6 cut(s) 178, 256, 283, 342, 424, 440
NlaIII CATG 4 cut(s) 54, 273, 358, 464
NlaIV GGNNCC 2 cut(s) 27, 360
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 149
PleI GAGTC 2 cut(s) 293, 385
PpsI GAGTC 2 cut(s) 293, 385
PspN4I GGNNCC 2 cut(s) 27, 360
PspPI GGNCC 3 cut(s) 120, 358, 457
PsuI RGATCY 3 cut(s) 178, 342, 424
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 183
Sau3AI GATC 6 cut(s) 178, 256, 283, 342, 424, 440
Sau96I GGNCC 3 cut(s) 120, 358, 457
SchI GAGTC 2 cut(s) 293, 386
SetI ASST 4 cut(s) 27, 76, 145, 395
SfaNI GCATC 2 cut(s) 178, 455
SinI GGWCC 2 cut(s) 120, 457
Sse9I AATT 1 cut(s) 220
SsiI CCGC 2 cut(s) 211, 363
SspMI CTAG 3 cut(s) 159, 243, 291
StyI CCWWGG 2 cut(s) 354, 460
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 389, 400
TasI AATT 1 cut(s) 220
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TspDTI ATGAA 2 cut(s) 39, 216
TspGWI ACGGA 2 cut(s) 112, 121
VpaK11BI GGWCC 2 cut(s) 120, 457
XapI RAATTY 1 cut(s) 220
XspI CTAG 3 cut(s) 159, 243, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.