Rh1BG045600

At2g17340-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
6143486 .. 6147607
4122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG045600.1

Sequence Viewer

Length: 300 bp
ATGCAATTGCTTTTTTTGGTGCTGAGGTTGTTTTTGCTTTTGGTGATCAAATATGTTGAGAATGTGGTGGATATTAATGATGCTATTGAAGATGAAGGCAAGCGGGTAGAGAATCTGATTAGAGGGGTATTTGCTGGAAACATACTTGATCTTGGTTCTGCATGGGTATGCAAATTTTATAGTTGCATAGAAGTGATTGTAAAGTTGATTGATAGTCAATTTACTACCAACGAAGGCCTAATGCTCCACCACTTGGATTTTGGTCACATCGAACTTACATTTAAGCTTACATCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

11.38

Weight (kDa)

4.98

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018109)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 253
AciI CCGC 1 cut(s) 103
AcsI RAATTY 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
AoxI GGCC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 173
AseI ATTAAT 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 55
BbvCI CCTCAGC 1 cut(s) 23
BclI TGATCA 1 cut(s) 45
BmsI GCATC 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 14
BshFI GGCC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 253
BsnI GGCC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 45, 148
BspACI CCGC 1 cut(s) 103
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 15
BssMI GATC 2 cut(s) 45, 148
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 23
BstKTI GATC 2 cut(s) 48, 151
BstMBI GATC 2 cut(s) 45, 148
BsuRI GGCC 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 101
CviAII CATG 1 cut(s) 162
CviJI RGCY 2 cut(s) 237, 286
CviKI_1 RGCY 2 cut(s) 237, 286
DdeI CTNAG 1 cut(s) 23
DpnI GATC 2 cut(s) 47, 150
DpnII GATC 2 cut(s) 45, 148
Eco147I AGGCCT 1 cut(s) 237
FaeI CATG 1 cut(s) 165
FaiI YATR 7 cut(s) 54, 143, 163, 169, 180, 188, 295
FatI CATG 1 cut(s) 161
FauI CCCGC 1 cut(s) 96
FbaI TGATCA 1 cut(s) 45
HaeIII GGCC 1 cut(s) 237
Hin1II CATG 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 1 cut(s) 112
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 117
HpyAV CCTTC 2 cut(s) 89, 227
HpyCH4V TGCA 4 cut(s) 4, 161, 171, 186
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 1 cut(s) 165
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 2 cut(s) 45, 148
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 1 cut(s) 120
LweI GCATC 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 263
MalI GATC 2 cut(s) 47, 150
MboI GATC 2 cut(s) 45, 148
MboII GAAGA 1 cut(s) 101
MfeI CAATTG 1 cut(s) 5
MluCI AATT 3 cut(s) 5, 173, 218
MnlI CCTC 2 cut(s) 18, 116
MseI TTAA 2 cut(s) 75, 282
MslI CAYNNNNRTG 2 cut(s) 166, 191
MunI CAATTG 1 cut(s) 5
NdeII GATC 2 cut(s) 45, 148
NlaIII CATG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 263
PceI AGGCCT 1 cut(s) 237
PfeI GAWTC 1 cut(s) 112
PflMI CCANNNNNTGG 1 cut(s) 253
PshBI ATTAAT 1 cut(s) 75
RseI CAYNNNNRTG 2 cut(s) 166, 191
SaqAI TTAA 2 cut(s) 75, 282
Sau3AI GATC 2 cut(s) 45, 148
SetI ASST 2 cut(s) 29, 288
SfaNI GCATC 1 cut(s) 70
SgeI CNNG 7 cut(s) 112, 116, 147, 158, 164, 174, 265
SmiMI CAYNNNNRTG 2 cut(s) 166, 191
Sse9I AATT 3 cut(s) 5, 173, 218
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 1 cut(s) 103
StuI AGGCCT 1 cut(s) 237
TaqI TCGA 1 cut(s) 270
TasI AATT 3 cut(s) 5, 173, 218
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 2 cut(s) 75, 282
Tru9I TTAA 2 cut(s) 75, 282
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 108
Van91I CCANNNNNTGG 1 cut(s) 253
VspI ATTAAT 1 cut(s) 75
XapI RAATTY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.