Rh7CG429500

At2g17340-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
56210569 .. 56211959
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG429500.1

Sequence Viewer

Length: 234 bp
ATGTTTGAGAATGTGGTGGATCTTAATGATGCTATTGAAGATGAATGCAAGTGGGTAGAGAATTTGATTAGAGTGGTATTTGCTAGGAACATACTTGATCTTGGTTCTGCATGGGTATGCAAATTTTATAGTTGCATAGAAGTGATTGTAAAGTTGATTGATAGTCAATTTAATACCCAACGAAGGCCTAATTCTCCACCACTTGGATTTTGGTCAAATCGAACTTACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

9.04

Weight (kDa)

4.89

Isoelectric Point (pI)

61.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018109)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 203
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 2 cut(s) 61, 122
AfiI CCNNNNNNNGG 2 cut(s) 183, 203
AgsI TTSAA 1 cut(s) 38
AlwI GGATC 1 cut(s) 27
AoxI GGCC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 61, 122
BfaI CTAG 1 cut(s) 84
BmsI GCATC 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 203
BseLI CCNNNNNNNGG 2 cut(s) 183, 203
BshFI GGCC 1 cut(s) 187
BslI CCNNNNNNNGG 2 cut(s) 183, 203
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 19, 97
BspANI GGCC 1 cut(s) 187
BspPI GGATC 1 cut(s) 27
BssMI GATC 2 cut(s) 19, 97
BstKTI GATC 2 cut(s) 22, 100
BstMBI GATC 2 cut(s) 19, 97
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 187
CviAII CATG 1 cut(s) 111
CviJI RGCY 1 cut(s) 187
CviKI_1 RGCY 1 cut(s) 187
DpnI GATC 2 cut(s) 21, 99
DpnII GATC 2 cut(s) 19, 97
Eco147I AGGCCT 1 cut(s) 187
FaeI CATG 1 cut(s) 114
FaiI YATR 5 cut(s) 92, 112, 118, 129, 137
FatI CATG 1 cut(s) 110
FspBI CTAG 1 cut(s) 84
HaeIII GGCC 1 cut(s) 187
Hin1II CATG 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 177
HpyCH4V TGCA 4 cut(s) 48, 110, 120, 135
Hsp92II CATG 1 cut(s) 114
Kzo9I GATC 2 cut(s) 19, 97
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 84
MalI GATC 2 cut(s) 21, 99
MboI GATC 2 cut(s) 19, 97
MboII GAAGA 1 cut(s) 50
MflI RGATCY 1 cut(s) 19
MluCI AATT 4 cut(s) 61, 122, 167, 190
MseI TTAA 3 cut(s) 24, 171, 232
MslI CAYNNNNRTG 2 cut(s) 115, 140
Mva1269I GAATGC 1 cut(s) 50
NdeII GATC 2 cut(s) 19, 97
NlaIII CATG 1 cut(s) 114
PceI AGGCCT 1 cut(s) 187
PctI GAATGC 1 cut(s) 50
PflMI CCANNNNNTGG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 19
RseI CAYNNNNRTG 2 cut(s) 115, 140
SaqAI TTAA 3 cut(s) 24, 171, 232
Sau3AI GATC 2 cut(s) 19, 97
SfaNI GCATC 1 cut(s) 19
SgeI CNNG 6 cut(s) 61, 96, 107, 113, 123, 215
SmiMI CAYNNNNRTG 2 cut(s) 115, 140
Sse9I AATT 4 cut(s) 61, 122, 167, 190
SseBI AGGCCT 1 cut(s) 187
SspMI CTAG 1 cut(s) 84
StuI AGGCCT 1 cut(s) 187
TaqI TCGA 1 cut(s) 220
TasI AATT 4 cut(s) 61, 122, 167, 190
Tru1I TTAA 3 cut(s) 24, 171, 232
Tru9I TTAA 3 cut(s) 24, 171, 232
TspDTI ATGAA 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 203
XapI RAATTY 2 cut(s) 61, 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.