Rroxscaffold_6G00390430

At2g17340-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018109
Physical Location & Seq
Forward (+)
5449211 .. 5450788
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390430.1

Sequence Viewer

Length: 333 bp
ATGTTTGTGATTATGCCTGAAAGGTACTCTGAAATACTTGAGGACTTGAAGAAGGATCCTGAGAGTCACGGCGGTCCGCCTGATTGCATTGATGAAGAGAATGCAAAGGCCATAACCCTGTTTGAGAATGTGGTGGATCTTAATGATGCTATTGAAGATGAAGGCAAGCGGGTAGAGAATCTGATTAGAGGGATATTTGCTGGAAACATATTTGATCTTGGTTCTGCACAAGAAAAGAAGCAGAGATTGGGCGGGAGTTTTCAGGAAGATTTTGATCATCTCTGGGAGCTATTCTTGGGTTTGTTTTGGAGGAAGTGCATGCCCAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

110

Amino Acids

12.72

Weight (kDa)

4.56

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 31 - 94 3e-08 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018109)

Species Orthologous Gene IDs
malus_domestica MD04G1014700.v1.1
rosa_multiflora Rmu_sc0000279.1_g000026 Rmu_sc0006888.1_g000020
rosa_roxburghii Rroxscaffold_6G00390430 Rroxscaffold_7G00195070 Rroxscaffold_7G00202140
rosa_rugosa Rorug07G0169300
rosa_samantha Rh1BG045600 Rh4DG156700 Rh7CG429500
rosa_wichuraiana Rw7G026210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 72, 77, 169, 252
AclWI GGATC 3 cut(s) 50, 63, 144
AfaI GTAC 1 cut(s) 26
AgsI TTSAA 2 cut(s) 49, 155
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
AlwI GGATC 3 cut(s) 50, 63, 144
AoxI GGCC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 74
AvaII GGWCC 1 cut(s) 74
BamHI GGATCC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 85
BclI TGATCA 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 273
BseJI GATNNNNATC 1 cut(s) 273
BseMII CTCAG 1 cut(s) 51
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 4 cut(s) 55, 136, 214, 274
BspACI CCGC 4 cut(s) 72, 77, 169, 252
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 3 cut(s) 50, 63, 144
BssMI GATC 4 cut(s) 55, 136, 214, 274
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 167, 320
BstDEI CTNAG 1 cut(s) 60
BstKTI GATC 4 cut(s) 58, 139, 217, 277
BstMBI GATC 4 cut(s) 55, 136, 214, 274
BstNSI RCATGY 1 cut(s) 322
BstX2I RGATCY 2 cut(s) 55, 136
BstYI RGATCY 2 cut(s) 55, 136
BsuRI GGCC 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 167, 320
Cfr13I GGNCC 1 cut(s) 74
CpoI CGGWCCG 1 cut(s) 74
Csp6I GTAC 1 cut(s) 25
CspI CGGWCCG 1 cut(s) 74
CviAII CATG 1 cut(s) 319
CviJI RGCY 2 cut(s) 110, 289
CviKI_1 RGCY 2 cut(s) 110, 289
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 60
DpnI GATC 4 cut(s) 57, 138, 216, 276
DpnII GATC 4 cut(s) 55, 136, 214, 274
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 74
FaeI CATG 1 cut(s) 322
FaiI YATR 4 cut(s) 14, 113, 209, 320
FatI CATG 1 cut(s) 318
FauI CCCGC 2 cut(s) 162, 245
FbaI TGATCA 1 cut(s) 274
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 1 cut(s) 322
HinfI GANTC 2 cut(s) 64, 178
Hpy188I TCNGA 2 cut(s) 31, 183
Hpy188III TCNNGA 2 cut(s) 59, 263
HpyAV CCTTC 2 cut(s) 46, 155
HpyCH4V TGCA 4 cut(s) 87, 104, 227, 318
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 4 cut(s) 55, 136, 214, 274
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 7 cut(s) 30, 72, 93, 131, 186, 248, 268
LweI GCATC 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 65
MalI GATC 4 cut(s) 57, 138, 216, 276
MboI GATC 4 cut(s) 55, 136, 214, 274
MboII GAAGA 4 cut(s) 61, 107, 167, 278
MflI RGATCY 2 cut(s) 55, 136
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 3 cut(s) 34, 182, 303
MseI TTAA 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 106
NdeII GATC 4 cut(s) 55, 136, 214, 274
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 65
NspI RCATGY 1 cut(s) 322
PaeI GCATGC 1 cut(s) 322
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 178
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 74
PsuI RGATCY 2 cut(s) 55, 136
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
Rsr2I CGGWCCG 1 cut(s) 74
RsrII CGGWCCG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 4 cut(s) 55, 136, 214, 274
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 1 cut(s) 73
SetI ASST 2 cut(s) 26, 291
SfaNI GCATC 1 cut(s) 136
SinI GGWCC 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SphI GCATGC 1 cut(s) 322
SsiI CCGC 4 cut(s) 72, 77, 169, 252
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 108, 174
VpaK11BI GGWCC 1 cut(s) 74
XceI RCATGY 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.