Rroxscaffold_7G00195070

At2g17340-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018109
Physical Location & Seq
Forward (+)
37265019 .. 37268932
3914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195070.1

Sequence Viewer

Length: 555 bp
ATGCGGCTTTGTATTGCTTTTTTTTTTCTTCTTCTCTTGCCCCTCTCCATACTTCCATCGGTTTCTTCCGTCTTCTATGCCCGTATGACCAAGATTGACTTCAGAATAGATTGCTTGGATCGACCTCTTCCTCAACTCCATCCCTTCCTTCAACGAGCCGAGAGTGATGCTTCAGTCAATGATGCTCCTGCTACAGCTGAAACGTTTGCTCAGAGGTACTCTGAAATACTTGAGGACTTGAAGAAGGATCCTGAGAGTCACGGCGGTCCGCCTGATTGCATTCTACTTTGCAGACTTCGTCAGCAGATTCTTAGGGAGTTGGGGTTCAGAGATATATTCAAGAAAGTCAAGGATGAAGAGAATGCAAAGGCCATAACCCTGTTTGAGAATGTGGTGGATCTTAATGATGCTATTGAAGATGAAGGCAAGCGGGTAGAGAATCTGATTAGAGGGATATTTGCTGGAAACATATTTGATCTTGGTTCTGCACAGCATTCCCTTTCAATAATATTGCCAACAGCTTCTATGGTGCAGACCTTTGAAGGAAAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

184

Amino Acids

20.75

Weight (kDa)

5.12

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 49 - 164 9.2e-21 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018109)

Species Orthologous Gene IDs
malus_domestica MD04G1014700.v1.1
rosa_multiflora Rmu_sc0000279.1_g000026 Rmu_sc0006888.1_g000020
rosa_roxburghii Rroxscaffold_6G00390430 Rroxscaffold_7G00195070 Rroxscaffold_7G00202140
rosa_rugosa Rorug07G0169300
rosa_samantha Rh1BG045600 Rh4DG156700 Rh7CG429500
rosa_wichuraiana Rw7G026210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 4, 264, 269, 430
AclI AACGTT 1 cut(s) 203
AclWI GGATC 4 cut(s) 126, 242, 255, 405
AcuI CTGAAG 2 cut(s) 85, 156
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 6 cut(s) 152, 241, 340, 416, 504, 542
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 2 cut(s) 197, 521
AluI AGCT 2 cut(s) 197, 521
AlwI GGATC 4 cut(s) 126, 242, 255, 405
AoxI GGCC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 266
AvaII GGWCC 1 cut(s) 266
BamHI GGATCC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 64
BccI CCATC 2 cut(s) 64, 147
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 3 cut(s) 157, 172, 397
BpiI GAAGAC 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
BseGI GGATG 2 cut(s) 139, 358
BseMII CTCAG 2 cut(s) 224, 243
BsgI GTGCAG 2 cut(s) 471, 551
BshFI GGCC 1 cut(s) 371
BsmI GAATGC 3 cut(s) 279, 367, 493
BsnI GGCC 1 cut(s) 371
Bsp143I GATC 4 cut(s) 118, 247, 397, 475
BspACI CCGC 4 cut(s) 4, 264, 269, 430
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 2 cut(s) 223, 244
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 4 cut(s) 126, 242, 255, 405
BssMI GATC 4 cut(s) 118, 247, 397, 475
Bst6I CTCTTC 2 cut(s) 132, 351
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 3 cut(s) 210, 252, 311
BstF5I GGATG 2 cut(s) 139, 358
BstKTI GATC 4 cut(s) 121, 250, 400, 478
BstMBI GATC 4 cut(s) 118, 247, 397, 475
BstSFI CTRYAG 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 64
BstX2I RGATCY 2 cut(s) 247, 397
BstYI RGATCY 2 cut(s) 247, 397
BsuRI GGCC 1 cut(s) 371
BtsCI GGATG 2 cut(s) 139, 358
Cac8I GCNNGC 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 266
CpoI CGGWCCG 1 cut(s) 266
Csp6I GTAC 1 cut(s) 217
CspI CGGWCCG 1 cut(s) 266
CviJI RGCY 5 cut(s) 7, 158, 197, 371, 521
CviKI_1 RGCY 5 cut(s) 7, 158, 197, 371, 521
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 3 cut(s) 210, 252, 311
DpnI GATC 4 cut(s) 120, 249, 399, 477
DpnII GATC 4 cut(s) 118, 247, 397, 475
Eam1104I CTCTTC 2 cut(s) 132, 351
EarI CTCTTC 2 cut(s) 132, 351
EciI GGCGGA 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 2 cut(s) 85, 156
FaiI YATR 7 cut(s) 50, 78, 86, 335, 374, 470, 527
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FauI CCCGC 1 cut(s) 423
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 126, 365
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 371
HinfI GANTC 3 cut(s) 256, 307, 439
Hpy188I TCNGA 5 cut(s) 104, 213, 223, 329, 444
Hpy188III TCNNGA 2 cut(s) 251, 340
HpyAV CCTTC 5 cut(s) 154, 158, 238, 416, 536
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 5 cut(s) 279, 291, 365, 488, 532
HpyF3I CTNAG 3 cut(s) 210, 252, 311
HpySE526I ACGT 1 cut(s) 203
Kzo9I GATC 4 cut(s) 118, 247, 397, 475
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 201, 264, 285, 392, 447
LweI GCATC 3 cut(s) 157, 172, 397
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 257
MalI GATC 4 cut(s) 120, 249, 399, 477
MboI GATC 4 cut(s) 118, 247, 397, 475
MboII GAAGA 8 cut(s) 20, 23, 57, 64, 119, 253, 368, 428
MflI RGATCY 2 cut(s) 247, 397
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 6 cut(s) 53, 135, 141, 207, 226, 443
MseI TTAA 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 197
Mva1269I GAATGC 3 cut(s) 279, 367, 493
NdeII GATC 4 cut(s) 118, 247, 397, 475
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 257
PctI GAATGC 3 cut(s) 279, 367, 493
PfeI GAWTC 2 cut(s) 307, 439
PflFI GACNNNGTC 1 cut(s) 297
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp1406I AACGTT 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 266
PsuI RGATCY 2 cut(s) 247, 397
PsyI GACNNNGTC 1 cut(s) 297
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
Rsr2I CGGWCCG 1 cut(s) 266
RsrII CGGWCCG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 4 cut(s) 118, 247, 397, 475
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 1 cut(s) 265
SetI ASST 6 cut(s) 127, 199, 206, 218, 523, 539
SfaNI GCATC 3 cut(s) 157, 172, 397
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SsiI CCGC 4 cut(s) 4, 264, 269, 430
SspI AATATT 1 cut(s) 510
TaiI ACGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 121
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 307, 439
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 369, 435
TspGWI ACGGA 1 cut(s) 58
Tth111I GACNNNGTC 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.