Rw7G026210

At2g17340-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0018109
Physical Location & Seq
Reverse (-)
33237930 .. 33239859
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026210.1

Sequence Viewer

Length: 480 bp
ATGCCGATTGAATCGAACTACAGAGCCTGCACCATCCCTTACTGCTTCCCCTCCGACAATCCCCGCAAGCCTACTCCCACTGAGATTGCTTGGATCGACCTCTTCCTCAACTCCATCCTTTCCTTCAAGAAGCGAGCTGAGAGTGATGCTTTAGTCAATGATGCTCCTACTAAAGCAGAAACGTTTGCTCAGAGGTACTCTGAAATACTTGAGGACTTGAAGAAGGACCCTGAGAGTCACGGCGGTTCGCCTGATTGCATTCTACTTTGCAGACTTCGTGAGCAGATTCTTAGGGAGTTGGGGTTCAAAGATATATTCAAGAAAGTCAAGGATAAAGAGAATGCAAAGGCCATAACCCTGTTTGAGAATGTGGTGGATCTTAATGATGCTATTGAAGATGAAGGCAAGCGGATTTTGATCATCACTAGGAGCTACGCTTGGGTTTGTTTTGGAGGAAGTGTGTGCCCAGATTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

159

Amino Acids

18.11

Weight (kDa)

5.05

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 41 - 141 4e-12 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018109)

Species Orthologous Gene IDs
malus_domestica MD04G1014700.v1.1
rosa_multiflora Rmu_sc0000279.1_g000026 Rmu_sc0006888.1_g000020
rosa_roxburghii Rroxscaffold_6G00390430 Rroxscaffold_7G00195070 Rroxscaffold_7G00202140
rosa_rugosa Rorug07G0169300
rosa_samantha Rh1BG045600 Rh4DG156700 Rh7CG429500
rosa_wichuraiana Rw7G026210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 64, 243, 409
AclI AACGTT 1 cut(s) 182
AclWI GGATC 2 cut(s) 101, 384
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 6 cut(s) 11, 127, 220, 307, 319, 395
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 2 cut(s) 137, 432
AluI AGCT 2 cut(s) 137, 432
AlwI GGATC 2 cut(s) 101, 384
AlwNI CAGNNNCTG 1 cut(s) 27
AoxI GGCC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 226
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 467
BccI CCATC 2 cut(s) 41, 122
BceAI ACGGC 1 cut(s) 256
BclI TGATCA 1 cut(s) 417
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 228
BmsI GCATC 3 cut(s) 136, 151, 376
BpuEI CTTGAG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 416
BsaXI ACNNNNNCTCC 4 cut(s) 287, 317, 444, 474
Bse8I GATNNNNATC 1 cut(s) 416
BseGI GGATG 2 cut(s) 33, 114
BseJI GATNNNNATC 1 cut(s) 416
BseMII CTCAG 4 cut(s) 72, 129, 203, 222
BseSI GKGCMC 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 13
BshFI GGCC 1 cut(s) 350
BsmI GAATGC 2 cut(s) 258, 346
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 3 cut(s) 93, 376, 417
BspACI CCGC 3 cut(s) 64, 243, 409
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 4 cut(s) 73, 130, 202, 223
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 2 cut(s) 101, 384
BssMI GATC 3 cut(s) 93, 376, 417
Bst6I CTCTTC 1 cut(s) 107
BstC8I GCNNGC 4 cut(s) 28, 68, 135, 407
BstDEI CTNAG 5 cut(s) 81, 138, 189, 231, 290
BstF5I GGATG 2 cut(s) 33, 114
BstKTI GATC 3 cut(s) 96, 379, 420
BstMBI GATC 3 cut(s) 93, 376, 417
BstSFI CTRYAG 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 467
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 2 cut(s) 33, 114
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 4 cut(s) 28, 68, 135, 407
CaiI CAGNNNCTG 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 196
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviJI RGCY 5 cut(s) 26, 70, 137, 350, 432
CviKI_1 RGCY 5 cut(s) 26, 70, 137, 350, 432
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 5 cut(s) 81, 138, 189, 231, 290
DpnI GATC 3 cut(s) 95, 378, 419
DpnII GATC 3 cut(s) 93, 376, 417
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 226
FaiI YATR 2 cut(s) 314, 353
FauI CCCGC 1 cut(s) 71
FbaI TGATCA 1 cut(s) 417
FokI GGATG 2 cut(s) 20, 101
FspBI CTAG 1 cut(s) 426
HaeIII GGCC 1 cut(s) 350
HinfI GANTC 3 cut(s) 11, 235, 286
Hpy188I TCNGA 3 cut(s) 55, 192, 202
Hpy188III TCNNGA 3 cut(s) 127, 278, 319
HpyAV CCTTC 3 cut(s) 133, 217, 395
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 4 cut(s) 30, 258, 270, 344
HpyF3I CTNAG 5 cut(s) 81, 138, 189, 231, 290
HpySE526I ACGT 1 cut(s) 182
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 3 cut(s) 93, 376, 417
LmnI GCTCC 2 cut(s) 169, 429
LpnPI CCDG 4 cut(s) 40, 243, 264, 371
LweI GCATC 3 cut(s) 136, 151, 376
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 236
MalI GATC 3 cut(s) 95, 378, 419
MboI GATC 3 cut(s) 93, 376, 417
MboII GAAGA 3 cut(s) 94, 232, 407
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 467
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 6 cut(s) 61, 110, 116, 186, 205, 446
MseI TTAA 1 cut(s) 381
Mva1269I GAATGC 2 cut(s) 258, 346
NdeII GATC 3 cut(s) 93, 376, 417
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 236
PctI GAATGC 2 cut(s) 258, 346
PfeI GAWTC 2 cut(s) 11, 286
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
PpuMI RGGWCCY 1 cut(s) 226
Psp1406I AACGTT 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 27
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 381
Sau3AI GATC 3 cut(s) 93, 376, 417
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 244
SduI GDGCHC 1 cut(s) 467
SetI ASST 5 cut(s) 102, 139, 185, 197, 434
SfaNI GCATC 3 cut(s) 136, 151, 376
SfcI CTRYAG 1 cut(s) 19
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SsiI CCGC 3 cut(s) 64, 243, 409
SspMI CTAG 1 cut(s) 426
TaiI ACGT 1 cut(s) 185
TaqI TCGA 2 cut(s) 14, 96
TfiI GAWTC 2 cut(s) 11, 286
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 414
TspRI CASTG 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 226
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.