Rh4DG156700

At2g17340-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
31395379 .. 31396892
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG156700.1

Sequence Viewer

Length: 159 bp
ATGTTTGAGAATGTGGTGGATCTTAATGATGCTATTGAAGATGAATGCAAGCGGGTAGAGAATTTGATTAGAGTGGTATTTGCTAGGAACATACTTGATCTTGGTTCTGCATGGTTCTTTCAGAGGCTGGAAGAAGAGGAGGGGAGAGGCAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

6.17

Weight (kDa)

4.64

Isoelectric Point (pI)

65.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018109)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 52
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 1 cut(s) 61
AgsI TTSAA 1 cut(s) 38
AlwI GGATC 1 cut(s) 27
AlwNI CAGNNNCTG 1 cut(s) 127
ApoI RAATTY 1 cut(s) 61
BfaI CTAG 1 cut(s) 84
BmsI GCATC 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 152
BsmI GAATGC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 19, 97
BspACI CCGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 27
BssMI GATC 2 cut(s) 19, 97
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 50
BstKTI GATC 2 cut(s) 22, 100
BstMBI GATC 2 cut(s) 19, 97
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 50
CaiI CAGNNNCTG 1 cut(s) 127
CviAII CATG 1 cut(s) 111
CviJI RGCY 1 cut(s) 127
CviKI_1 RGCY 1 cut(s) 127
DpnI GATC 2 cut(s) 21, 99
DpnII GATC 2 cut(s) 19, 97
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
FaeI CATG 1 cut(s) 114
FaiI YATR 2 cut(s) 92, 112
FatI CATG 1 cut(s) 110
FauI CCCGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 84
Hin1II CATG 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 48, 110
Hsp92II CATG 1 cut(s) 114
Kzo9I GATC 2 cut(s) 19, 97
LpnPI CCDG 1 cut(s) 113
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 84
MalI GATC 2 cut(s) 21, 99
MboI GATC 2 cut(s) 19, 97
MboII GAAGA 3 cut(s) 50, 143, 146
MflI RGATCY 1 cut(s) 19
MluCI AATT 1 cut(s) 61
MnlI CCTC 4 cut(s) 117, 130, 133, 140
MseI TTAA 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 50
NdeII GATC 2 cut(s) 19, 97
NlaIII CATG 1 cut(s) 114
PctI GAATGC 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 19
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 2 cut(s) 19, 97
SfaNI GCATC 1 cut(s) 19
SgeI CNNG 7 cut(s) 61, 65, 96, 107, 113, 123, 140
Sse9I AATT 1 cut(s) 61
SsiI CCGC 1 cut(s) 52
SspMI CTAG 1 cut(s) 84
TasI AATT 1 cut(s) 61
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 57
XapI RAATTY 1 cut(s) 61
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.