MD04G1026400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0014015
Physical Location & Seq
Forward (+)
3053088 .. 3059272
6185 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1026400.v1.1.491

Sequence Viewer

Length: 2802 bp
ATGATTGATCGATCCATCAATCAATCAACAGTGGACATGAACATAATCCCAGAGGAATGGAAATCTCTCTTCCCAATCTCATCAGTCTTCAAGCCTCCTCTCCTCCTCTCAAACCCTTCACTTAAACCCATCCTCGGTCCCCTCATCTTCAACCCTAAACCCAACTCCGCCGCCGTCCTCTTCTCTTCCTCCTGCTTTCTCCCCCATCTCCCTCCTCTGCCCCACCTCTCTCTCCCCCGTTTCCTCCTCACCTCCTCCCCGGACTCTGCCCCTCTTCCCTCCACCTCCCATTCCATCGCCTCTCTATTGGGCCCCCACAACCACAAACACGACGTCGTCTCTTCCCTCCTCCACAACCGCCTTGAGGTCCTCCAGTGCCCGCAGATTAAGACCATTGTTGTGTTCTTCCCCACCGGCCAGAACTCTGACCAAGTTGGGTTCTTGCAGTTGGTACTAAAAGATTCGACCTTTGGTGTCAAAGCTGATGAAAGCGGCGAGGTTTTGGGTTTGAGGGGTCCGTCCAATTACCGGATTTCGAGGATTTCGGTGAACCCGGTTCCTGGGTTTTCAAGTTCAAGAGGTAACGATTCTTCTGTTACAATTGGGTATTTGTTGGCTTCTACTTTGTACTCTGTCCAGTGGTTTACTGTAAAGGTTGGAGATACGAGTTTGAATTTGGGTAATAAAGTTAGTTTAAGTTACTTGGGCAGTAAGGTTTTCAAGACTTGCTGTGTTGTACATGCCTCTTGGAGTCCACATTTACAGGAAGAGAGTGTGGTTTTGTTAGAAAATGGTGCTTTGTTTTTGTTTGATTTGGAGTCTCGTCCGAAAACCCATAATTTTAAGTTTAAGGGGACCAGATTGAAAGTAGTATGGGATAATGGCGATGTTTCGAGTACTTCAAGAAATTATAGGTGGTTGAGTTGTGAATTCAGTTGGCATCCTAGAGTTTTGATCGTTGCGCGTTCGGATGCAGTTTTCTTAGTTGATTTGAGGTCCCGTGAATGTAGTGTGACTTGTTTGATGAAGGTTGAAATGTTACATATGTATGTCCCGGTTGAAAAGGAGCAGTTCCTTGTGCTTTCAAGGACTGCTTCTGATGATTTTCACTTTGTTTTAGCTTCTGACACGTTGTTACTTCTTTGTGACTTGCGCAAACCATTGATGCCGGTGTTGCAATGGGCTCATGGCCTTGATAAACCAAGCCATCTTGATGTTTTTAGACTGTCAGAATTGAGGTCACACTCGAGGGAGGACATGTATAAGTGGGCTTCTGACTCGGGTTTTTGCATTGTGATGGGGTCATTTTGGAATTGTCAGTTTAATACCTTTTGCTATGGCCCTTCCCTCCCAACTCCAATAGGATCAGTTGCTTCCAAAGTAGCAGAACTTCGGAAGTCATTTTATGCATGGGAGCTACCTTCAGATGTTTTACTGCCGGGCCATGAGTGCCATTGTGGAAACTGTATATTAAGAGAAGAGTTTGTAAAAGACGCTCTTCCTGAATGGGTTGATTGGCAACAGAAGAAAGAAATAGTTTTGGGTTTTGGCATTGTAAACAAAGAATTGTCTTCTCTGCTTTCTGAGCCAGATGAATTCGGTGGTTTTACATTGATCAGGCTTATGTCCTCGGGGAAGCTAGAATTACAGAGATACCGTGCATCGTGGGATCCTGTAAAAAAGGTGGAAGAATCGCATGGGGAATCGTTGTATTTTAAGGATTATTTTCTGGATTCCCTAGCTGATGAGGAATACAAATTCCCTAGGAGATTTAAGTACCTTAAACTGGACTACCTCTGTGCTTATCTAAATGATAAGCTTGATGAAGTCTTAGATACCAAAATGAAAGTTCCCTCTAAGATTGTTCAAGGGACGGAACTTTTTAGCCCAGAATACCATGAGCTTTTATGTAAAAAGTTACGGGCTTGTGGCTTTGGTCAGTTTAGATCATGTCCTGCAGTCACAAGTGTTTTAAATGACATCAGCTTGCCAACAAGCATACATGAAGTTGTTTTGAAGAGATTGTGGTCAGAATTGCCAATGGAACTTCTGCAACTGGCCTTTTCTAACTACCCTGAAATCCTTGAAGTGCTTGTGGACGAAAAGAGGTCGGCTTTGGAATTCTCTGCCGTACCGGACCAATCCCAGTTGCCTCCTTTTATTTTAAGGAAGCCTTCATGCCGCAGCAGTAAGTGGTCACAGAAAGTTAAACCCAGTGATGCCCTTGTCGGTCCAGTTCTTCCCCTTCCTATATTGCTTACACTTCATGAACTTCGCAATGGGTGTCTGAATTCGCAAGATGAACAGTCAGGTAAATTTTCAGTAGAGGCAGAAATTAGTCGCGGCTGTAATGAGATCATGCAGGTCGCCAGTGAAATGACTGTTTCTAAACCGGACCCTGGGATTGTCGATGAACAAGCAGGCTCCCTTGCTAATGCTGGAGAAGAGACATGGAGATGCACTCAAAAACCGAAACCTTTCTTTTCATACCACCCAGTTGCAGGTACGGGATCTCCAATGGACCATATACGGGGCAAATCTGTCTTCAAGGACGACAGATTTGACACCGTAATTTCTAAAGTGTCTGAGAAGAAGCCCGCTCCCAGCGGTAGTGAGGATAACGTCGGACTGGAACTGTTTGATGATCTTTGTCCAGTAGAGTTGAAGTTTGATGCATCTGACATGAAGTTTAAGCAGAAGGAATTGACTGCATACAATGTATTGAAGAAACAATTCGTAGAATGGCAAAACCGTTTTGACTTGTACAAAGAATCCTGCTCCCATATTGAATCAAATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

934

Amino Acids

105.11

Weight (kDa)

6.24

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF1C_beta-prop PF20641 248 - 344 1.1e-06 TAF1C, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18310
fragaria_vesca FvH4_5g25850
malus_domestica MD04G1026400.v1.1
prunus_persica Prupe.2G050600_v2.0.a1
pyrus_communis pycom04g02250
rosa_chinensis RchiOBHm_Chr6g0264721 RchiOBHm_Chr6g0264731 RchiOBHm_Chr7g0216331
rosa_laevigata RLG00000002581
rosa_multiflora Rmu_sc0015060.1_g000019
rosa_roxburghii Rroxscaffold_3G00243320
rosa_rugosa Rorug07G0160000
rosa_samantha Rh7AG297400 Rh7BG289700 Rh7CG317600 Rh7DG299800
rosa_wichuraiana Rw7G025300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 336
Acc16I TGCGCA 1 cut(s) 1154
Acc36I ACCTGC 2 cut(s) 2353, 2492
AccBSI CCGCTC 1 cut(s) 2600
AccII CGCG 2 cut(s) 964, 2343
AciI CCGC 9 cut(s) 168, 171, 358, 380, 492, 2182, 2343, 2598, 2607
AclWI GGATC 5 cut(s) 6, 1372, 1664, 1677, 2518
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 7 cut(s) 673, 929, 1595, 1757, 2120, 2290, 2315
AcuI CTGAAG 1 cut(s) 1407
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 8 cut(s) 453, 629, 738, 898, 1778, 2133, 2506, 2765
AfiI CCNNNNNNNGG 8 cut(s) 134, 364, 528, 560, 1786, 2399, 2501, 2530
AflIII ACRYGT 2 cut(s) 1128, 1257
AjnI CCWGG 2 cut(s) 559, 2398
AluBI AGCT 9 cut(s) 482, 1121, 1417, 1639, 1742, 1819, 1903, 1986, 2799
AluI AGCT 9 cut(s) 482, 1121, 1417, 1639, 1742, 1819, 1903, 1986, 2799
Alw26I GTCTC 3 cut(s) 343, 825, 2441
AlwI GGATC 5 cut(s) 6, 1372, 1664, 1677, 2518
Ama87I CYCGRG 3 cut(s) 1246, 1279, 1630
AoxI GGCC 6 cut(s) 310, 415, 1189, 1339, 1441, 2058
ApaI GGGCCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 2184
ApoI RAATTY 7 cut(s) 673, 929, 1595, 1757, 2120, 2290, 2315
ArsI GACNNNNNNTTYG 4 cut(s) 318, 350, 2543, 2575
Asp700I GAANNNNTTC 2 cut(s) 2477, 2732
AspA2I CCTAGG 1 cut(s) 1763
AspLEI GCGC 2 cut(s) 964, 1155
AsuC2I CCSGG 4 cut(s) 260, 554, 1055, 1440
AsuHPI GGTGA 2 cut(s) 241, 559
AvaI CYCGRG 3 cut(s) 1246, 1279, 1630
AvaII GGWCC 9 cut(s) 137, 367, 515, 855, 996, 2137, 2231, 2395, 2521
AvrII CCTAGG 1 cut(s) 1763
BaeGI GKGCMC 2 cut(s) 314, 380
BamHI GGATCC 1 cut(s) 1669
BanII GRGCYC 2 cut(s) 314, 1186
BarI GAAGNNNNNNTAC 4 cut(s) 574, 606, 1374, 1406
BbsI GAAGAC 3 cut(s) 79, 1563, 2536
BbvI GCAGC 1 cut(s) 2196
BccI CCATC 6 cut(s) 23, 137, 213, 302, 1215, 1291
BceAI ACGGC 2 cut(s) 158, 2114
BciT130I CCWGG 2 cut(s) 561, 2400
BclI TGATCA 1 cut(s) 1614
BcnI CCSGG 4 cut(s) 260, 554, 1055, 1440
BcoDI GTCTC 3 cut(s) 343, 825, 2441
BfaI CTAG 4 cut(s) 945, 1640, 1739, 1764
BfmI CTRYAG 1 cut(s) 1956
BfuAI ACCTGC 2 cut(s) 2353, 2492
BisI GCNGC 5 cut(s) 171, 493, 2182, 2185, 2344
BlnI CCTAGG 1 cut(s) 1763
BlsI GCNGC 5 cut(s) 172, 494, 2183, 2186, 2345
BmcAI AGTACT 1 cut(s) 898
Bme1390I CCNGG 6 cut(s) 260, 554, 561, 1055, 1440, 2400
Bme18I GGWCC 9 cut(s) 137, 367, 515, 855, 996, 2137, 2231, 2395, 2521
BmeT110I CYCGRG 3 cut(s) 1246, 1279, 1630
BmrFI CCNGG 6 cut(s) 260, 554, 561, 1055, 1440, 2400
BmrI ACTGGG 3 cut(s) 2140, 2208, 2489
BmsI GCATC 8 cut(s) 949, 961, 1155, 1670, 2209, 2447, 2662, 2684
BmuI ACTGGG 3 cut(s) 2140, 2208, 2489
BpiI GAAGAC 3 cut(s) 79, 1563, 2536
BplI GAGNNNNNCTC 2 cut(s) 2446, 2478
BpmI CTGGAG 2 cut(s) 356, 2460
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 4 cut(s) 260, 554, 1055, 1440
Bsa29I ATCGAT 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 7 cut(s) 133, 258, 560, 1629, 1763, 2398, 2399
BsaWI WCCGGW 3 cut(s) 528, 2134, 2392
BsaXI ACNNNNNCTCC 4 cut(s) 1244, 1274, 2497, 2527
Bsc4I CCNNNNNNNGG 8 cut(s) 134, 364, 528, 560, 1786, 2399, 2501, 2530
Bse118I RCCGGY 2 cut(s) 413, 1168
Bse3DI GCAATG 2 cut(s) 1184, 2284
BseBI CCWGG 2 cut(s) 561, 2400
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 7 cut(s) 133, 258, 560, 1629, 1763, 2398, 2399
BseGI GGATG 3 cut(s) 129, 940, 976
BseLI CCNNNNNNNGG 8 cut(s) 134, 364, 528, 560, 1786, 2399, 2501, 2530
BseMI GCAATG 2 cut(s) 1184, 2284
BseMII CTCAG 2 cut(s) 1575, 2577
BseRI GAGGAG 7 cut(s) 87, 92, 95, 204, 236, 244, 338
BseSI GKGCMC 2 cut(s) 314, 380
BseXI GCAGC 1 cut(s) 2196
BseYI CCCAGC 1 cut(s) 2603
Bsh1236I CGCG 2 cut(s) 964, 2343
BshFI GGCC 6 cut(s) 312, 417, 1191, 1341, 1443, 2060
BshVI ATCGAT 1 cut(s) 10
BsiHKCI CYCGRG 3 cut(s) 1246, 1279, 1630
BsiSI CCGG 9 cut(s) 260, 414, 529, 554, 1055, 1169, 1439, 2135, 2393
BslFI GGGAC 5 cut(s) 123, 868, 982, 1037, 1885
BslI CCNNNNNNNGG 8 cut(s) 134, 364, 528, 560, 1786, 2399, 2501, 2530
BsmAI GTCTC 3 cut(s) 343, 825, 2441
BsmBI CGTCTC 1 cut(s) 343
BsmFI GGGAC 5 cut(s) 123, 868, 982, 1037, 1885
BsnI GGCC 6 cut(s) 312, 417, 1191, 1341, 1443, 2060
BsoBI CYCGRG 3 cut(s) 1246, 1279, 1630
Bsp120I GGGCCC 1 cut(s) 310
Bsp1286I GDGCHC 3 cut(s) 314, 380, 1186
Bsp1407I TGTACA 2 cut(s) 736, 2763
BspACI CCGC 9 cut(s) 168, 171, 358, 380, 492, 2182, 2343, 2598, 2607
BspANI GGCC 6 cut(s) 312, 417, 1191, 1341, 1443, 2060
BspCNI CTCAG 2 cut(s) 1576, 2578
BspDI ATCGAT 1 cut(s) 10
BspFNI CGCG 2 cut(s) 964, 2343
BspHI TCATGA 1 cut(s) 2266
BspMAI CTGCAG 1 cut(s) 1960
BspMI ACCTGC 2 cut(s) 2353, 2492
BspPI GGATC 5 cut(s) 6, 1372, 1664, 1677, 2518
BspQI GCTCTTC 1 cut(s) 1503
BsrBI CCGCTC 1 cut(s) 2600
BsrDI GCAATG 2 cut(s) 1184, 2284
BsrFI RCCGGY 2 cut(s) 413, 1168
BsrGI TGTACA 2 cut(s) 736, 2763
BssAI RCCGGY 2 cut(s) 413, 1168
BssECI CCNNGG 7 cut(s) 133, 258, 560, 1629, 1763, 2398, 2399
BssNI GRCGYC 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 1763
Bst2UI CCWGG 2 cut(s) 561, 2400
BstACI GRCGYC 1 cut(s) 333
BstAUI TGTACA 2 cut(s) 736, 2763
BstC8I GCNNGC 4 cut(s) 380, 1988, 2422, 2598
BstDEI CTNAG 5 cut(s) 982, 1584, 1831, 1857, 2586
BstF5I GGATG 3 cut(s) 129, 940, 976
BstFNI CGCG 2 cut(s) 964, 2343
BstHHI GCGC 2 cut(s) 964, 1155
BstMAI GTCTC 3 cut(s) 343, 825, 2441
BstMWI GCNNNNNNNGC 3 cut(s) 1174, 1449, 1585
BstNI CCWGG 2 cut(s) 561, 2400
BstNSI RCATGY 2 cut(s) 743, 1261
BstSCI CCNGG 6 cut(s) 258, 552, 559, 1053, 1438, 2398
BstSFI CTRYAG 1 cut(s) 1956
BstSLI GKGCMC 2 cut(s) 314, 380
BstUI CGCG 2 cut(s) 964, 2343
BstV1I GCAGC 1 cut(s) 2196
BstV2I GAAGAC 3 cut(s) 79, 1563, 2536
BstX2I RGATCY 2 cut(s) 1669, 2510
BstXI CCANNNNNNTGG 1 cut(s) 57
BstYI RGATCY 2 cut(s) 1669, 2510
Bsu15I ATCGAT 1 cut(s) 10
BsuRI GGCC 6 cut(s) 312, 417, 1191, 1341, 1443, 2060
BsuTUI ATCGAT 1 cut(s) 10
BtgZI GCGATG 2 cut(s) 280, 900
BtsCI GGATG 3 cut(s) 129, 940, 976
BtsIMutI CAGTG 5 cut(s) 36, 380, 644, 2221, 2377
BveI ACCTGC 2 cut(s) 2353, 2492
Cac8I GCNNGC 4 cut(s) 380, 1988, 2422, 2598
CciI TCATGA 1 cut(s) 2266
CfoI GCGC 2 cut(s) 964, 1155
Cfr10I RCCGGY 2 cut(s) 413, 1168
ClaI ATCGAT 1 cut(s) 10
CseI GACGC 1 cut(s) 1502
Csp6I GTAC 8 cut(s) 452, 628, 737, 897, 1777, 2132, 2505, 2764
CviQI GTAC 8 cut(s) 452, 628, 737, 897, 1777, 2132, 2505, 2764
DdeI CTNAG 5 cut(s) 982, 1584, 1831, 1857, 2586
DraI TTTAAA 1 cut(s) 1974
EaeI YGGCCR 1 cut(s) 415
EciI GGCGGA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 1763
Eco24I GRGCYC 2 cut(s) 314, 1186
Eco47I GGWCC 9 cut(s) 137, 367, 515, 855, 996, 2137, 2231, 2395, 2521
Eco57I CTGAAG 1 cut(s) 1407
Eco88I CYCGRG 3 cut(s) 1246, 1279, 1630
EcoO109I RGGNCCY 3 cut(s) 311, 367, 996
EcoRI GAATTC 4 cut(s) 929, 1595, 2120, 2290
EcoRII CCWGG 2 cut(s) 559, 2398
EcoT14I CCWWGG 1 cut(s) 1763
EcoT22I ATGCAT 2 cut(s) 1411, 2677
EcoT38I GRGCYC 2 cut(s) 314, 1186
ErhI CCWWGG 1 cut(s) 1763
Esp3I CGTCTC 1 cut(s) 343
FalI AAGNNNNNCTT 6 cut(s) 1078, 1110, 1482, 1514, 2158, 2190
FaqI GGGAC 5 cut(s) 123, 868, 982, 1037, 1885
FauI CCCGC 2 cut(s) 387, 2605
FauNDI CATATG 1 cut(s) 1044
FbaI TGATCA 1 cut(s) 1614
Fnu4HI GCNGC 5 cut(s) 171, 493, 2182, 2185, 2344
FokI GGATG 3 cut(s) 116, 927, 983
FriOI GRGCYC 2 cut(s) 314, 1186
Fsp4HI GCNGC 5 cut(s) 171, 493, 2182, 2185, 2344
FspBI CTAG 4 cut(s) 945, 1640, 1739, 1764
FspI TGCGCA 1 cut(s) 1154
GlaI GCGC 2 cut(s) 963, 1154
GluI GCNGC 5 cut(s) 171, 493, 2182, 2185, 2344
GsaI CCCAGC 1 cut(s) 2607
GsuI CTGGAG 2 cut(s) 356, 2460
HaeIII GGCC 6 cut(s) 312, 417, 1191, 1341, 1443, 2060
HapII CCGG 9 cut(s) 260, 414, 529, 554, 1055, 1169, 1439, 2135, 2393
HgaI GACGC 1 cut(s) 1502
HhaI GCGC 2 cut(s) 964, 1155
Hin1I GRCGYC 1 cut(s) 333
Hin6I GCGC 2 cut(s) 962, 1153
HinP1I GCGC 2 cut(s) 962, 1153
HindIII AAGCTT 1 cut(s) 1817
HpaII CCGG 9 cut(s) 260, 414, 529, 554, 1055, 1169, 1439, 2135, 2393
HphI GGTGA 2 cut(s) 241, 559
Hpy166II GTNNAC 6 cut(s) 34, 550, 645, 755, 1558, 2098
Hpy188III TCNNGA 7 cut(s) 576, 721, 903, 1211, 1502, 1730, 2267
Hpy8I GTNNAC 6 cut(s) 34, 550, 645, 755, 1558, 2098
Hpy99I CGWCG 3 cut(s) 335, 338, 2627
HpyAV CCTTC 7 cut(s) 126, 1021, 1353, 1431, 2184, 2255, 2692
HpyCH4IV ACGT 3 cut(s) 333, 1130, 2622
HpyF10VI GCNNNNNNNGC 3 cut(s) 1174, 1449, 1585
HpyF3I CTNAG 5 cut(s) 982, 1584, 1831, 1857, 2586
HpySE526I ACGT 3 cut(s) 333, 1130, 2622
Hsp92I GRCGYC 1 cut(s) 333
HspAI GCGC 2 cut(s) 962, 1153
Ksp22I TGATCA 1 cut(s) 1614
LguI GCTCTTC 1 cut(s) 1503
LmnI GCTCC 5 cut(s) 1066, 1414, 2429, 2605, 2783
Lsp1109I GCAGC 1 cut(s) 2196
LweI GCATC 8 cut(s) 949, 961, 1155, 1670, 2209, 2447, 2662, 2684
MaeI CTAG 4 cut(s) 945, 1640, 1739, 1764
MaeII ACGT 3 cut(s) 333, 1130, 2622
MbiI CCGCTC 1 cut(s) 2600
MfeI CAATTG 1 cut(s) 600
MflI RGATCY 2 cut(s) 1669, 2510
MhlI GDGCHC 3 cut(s) 314, 380, 1186
MlyI GAGTC 4 cut(s) 257, 760, 827, 1271
MmeI TCCRAC 2 cut(s) 637, 2605
Mph1103I ATGCAT 2 cut(s) 1411, 2677
MroXI GAANNNNTTC 2 cut(s) 2477, 2732
MslI CAYNNNNRTG 5 cut(s) 398, 1047, 1212, 1295, 2455
MspA1I CMGCKG 1 cut(s) 2607
MspI CCGG 9 cut(s) 260, 414, 529, 554, 1055, 1169, 1439, 2135, 2393
MspR9I CCNGG 6 cut(s) 260, 554, 561, 1055, 1440, 2400
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 2 cut(s) 561, 2400
MvnI CGCG 2 cut(s) 964, 2343
MwoI GCNNNNNNNGC 3 cut(s) 1174, 1449, 1585
NciI CCSGG 4 cut(s) 260, 554, 1055, 1440
NdeI CATATG 1 cut(s) 1044
NmuCI GTSAC 5 cut(s) 1012, 1145, 1239, 1960, 2196
NsbI TGCGCA 1 cut(s) 1154
NsiI ATGCAT 2 cut(s) 1411, 2677
NspI RCATGY 2 cut(s) 743, 1261
PaeR7I CTCGAG 1 cut(s) 1246
PagI TCATGA 1 cut(s) 2266
PasI CCCWGGG 1 cut(s) 2399
PciI ACATGT 1 cut(s) 1257
PciSI GCTCTTC 1 cut(s) 1503
PdmI GAANNNNTTC 2 cut(s) 2477, 2732
PfeI GAWTC 7 cut(s) 461, 587, 1691, 1703, 1733, 2771, 2789
PflFI GACNNNGTC 1 cut(s) 335
PkrI GCNGC 5 cut(s) 172, 494, 2183, 2186, 2345
PleI GAGTC 4 cut(s) 257, 759, 826, 1271
PpsI GAGTC 4 cut(s) 257, 759, 826, 1271
PpuMI RGGWCCY 2 cut(s) 367, 996
PscI ACATGT 1 cut(s) 1257
Psp5II RGGWCCY 2 cut(s) 367, 996
Psp6I CCWGG 2 cut(s) 559, 2398
PspFI CCCAGC 1 cut(s) 2603
PspGI CCWGG 2 cut(s) 559, 2398
PspOMI GGGCCC 1 cut(s) 310
PspPPI RGGWCCY 2 cut(s) 367, 996
PspXI VCTCGAGB 1 cut(s) 1246
PstI CTGCAG 1 cut(s) 1960
PsuI RGATCY 2 cut(s) 1669, 2510
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 8 cut(s) 453, 629, 738, 898, 1778, 2133, 2506, 2765
RsaNI GTAC 8 cut(s) 452, 628, 737, 897, 1777, 2132, 2505, 2764
RseI CAYNNNNRTG 5 cut(s) 398, 1047, 1212, 1295, 2455
SapI GCTCTTC 1 cut(s) 1503
SatI GCNGC 5 cut(s) 171, 493, 2182, 2185, 2344
ScaI AGTACT 1 cut(s) 898
SchI GAGTC 4 cut(s) 257, 760, 827, 1271
ScrFI CCNGG 6 cut(s) 260, 554, 561, 1055, 1440, 2400
SduI GDGCHC 3 cut(s) 314, 380, 1186
SfaNI GCATC 8 cut(s) 949, 961, 1155, 1670, 2209, 2447, 2662, 2684
SfcI CTRYAG 1 cut(s) 1956
Sfr274I CTCGAG 1 cut(s) 1246
SinI GGWCC 9 cut(s) 137, 367, 515, 855, 996, 2137, 2231, 2395, 2521
SlaI CTCGAG 1 cut(s) 1246
SmiMI CAYNNNNRTG 5 cut(s) 398, 1047, 1212, 1295, 2455
SmlI CTYRAG 2 cut(s) 362, 1246
SmoI CTYRAG 2 cut(s) 362, 1246
SsiI CCGC 9 cut(s) 168, 171, 358, 380, 492, 2182, 2343, 2598, 2607
SspMI CTAG 4 cut(s) 945, 1640, 1739, 1764
StyD4I CCNGG 6 cut(s) 258, 552, 559, 1053, 1438, 2398
StyI CCWWGG 1 cut(s) 1763
TaiI ACGT 3 cut(s) 336, 1133, 2625
TaqI TCGA 6 cut(s) 10, 464, 536, 893, 1247, 2409
TaqII GACCGA 2 cut(s) 125, 2219
TatI WGTACW 4 cut(s) 627, 736, 896, 2763
TauI GCSGC 4 cut(s) 173, 495, 2184, 2346
TfiI GAWTC 7 cut(s) 461, 587, 1691, 1703, 1733, 2771, 2789
TscAI CASTG 5 cut(s) 36, 380, 644, 2221, 2377
TseFI GTSAC 5 cut(s) 1012, 1145, 1239, 1960, 2196
TseI GCWGC 1 cut(s) 2184
Tsp45I GTSAC 5 cut(s) 1012, 1145, 1239, 1960, 2196
TspGWI ACGGA 2 cut(s) 507, 1889
TspRI CASTG 5 cut(s) 36, 380, 644, 2221, 2377
Tth111I GACNNNGTC 1 cut(s) 335
VpaK11BI GGWCC 9 cut(s) 137, 367, 515, 855, 996, 2137, 2231, 2395, 2521
XapI RAATTY 7 cut(s) 673, 929, 1595, 1757, 2120, 2290, 2315
XceI RCATGY 2 cut(s) 743, 1261
XhoI CTCGAG 1 cut(s) 1246
XmaJI CCTAGG 1 cut(s) 1763
XmnI GAANNNNTTC 2 cut(s) 2477, 2732
XspI CTAG 4 cut(s) 945, 1640, 1739, 1764
ZraI GACGTC 1 cut(s) 334
ZrmI AGTACT 1 cut(s) 898
Zsp2I ATGCAT 2 cut(s) 1411, 2677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.