RchiOBHm_Chr6g0264721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014015
Physical Location & Seq
Forward (+)
20067722 .. 20068336
615 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23742

Sequence Viewer

Length: 615 bp
ATGTACTCTGTGCATTGGTTTATAGTAAAGGTTGGAGATTTTGGTTCGAATTCAAATAGTGTTAGGTTAGTGTATGTGGGTGGTACGGTCTTCAAGGCTTGCTGTGTTGTACATGCTTGTTGGAGTCCGCATGTGCTGGAAGAAAGTGTGGTTTTGTTAGAGAATGGTGCTTTATTCTTGTTTGATTTGGAATCTCGTCTAGACAACGATATTTCAAATTCATATTTTAAAGGGACCAGATTGAAAGTCCTGTGGGACAATAATGGTTATGGTAGTTCTGGAAATTATAAGTGGTTAAGTTGTGAGTTCAGTTGGCATCCTAGAGTTTTGACTGTTGCACGTTCAGATGCAATTTTCTTAGTTGATTTGAGGTTCAATGAATGTAGTGTGACTTATTTGATGAAGATTGAGATGTTGCATATGTATGCCCCAATTGAAAAGGAGCAGTTCCGTGTGCTTTCAACGATTAGTTCTGATAGCTTTCACTTTGTTTTGGCTTCTGACAGTTTGTTACTTCTTTGTGATGTGCGCAAGCCATTCACGCCGGTGTTGCAATGGGCTCATAGCATCGACAAAACAAGCTATATTGATGTTTTTAGACTACTCATAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.35

Weight (kDa)

6.14

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF1C_beta-prop PF20641 28 - 136 9.5e-08 TAF1C, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18310
fragaria_vesca FvH4_5g25850
malus_domestica MD04G1026400.v1.1
prunus_persica Prupe.2G050600_v2.0.a1
pyrus_communis pycom04g02250
rosa_chinensis RchiOBHm_Chr6g0264721 RchiOBHm_Chr6g0264731 RchiOBHm_Chr7g0216331
rosa_laevigata RLG00000002581
rosa_multiflora Rmu_sc0015060.1_g000019
rosa_roxburghii Rroxscaffold_3G00243320
rosa_rugosa Rorug07G0160000
rosa_samantha Rh7AG297400 Rh7BG289700 Rh7CG317600 Rh7DG299800
rosa_wichuraiana Rw7G025300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
Acc16I TGCGCA 1 cut(s) 530
AciI CCGC 1 cut(s) 128
AcsI RAATTY 2 cut(s) 49, 217
AfaI GTAC 3 cut(s) 5, 85, 111
AgsI TTSAA 7 cut(s) 54, 94, 216, 244, 376, 437, 462
AleI CACNNNNGTG 1 cut(s) 545
AluBI AGCT 2 cut(s) 480, 582
AluI AGCT 2 cut(s) 480, 582
ApoI RAATTY 2 cut(s) 49, 217
AspLEI GCGC 1 cut(s) 531
AspS9I GGNCC 1 cut(s) 234
AsuII TTCGAA 1 cut(s) 47
AvaII GGWCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 562
BbsI GAAGAC 1 cut(s) 82
BfaI CTAG 2 cut(s) 200, 321
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 3 cut(s) 325, 337, 576
BpiI GAAGAC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 560
BseGI GGATG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 560
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 2 cut(s) 247, 269
BsmFI GGGAC 2 cut(s) 247, 269
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 562
Bsp1407I TGTACA 1 cut(s) 109
BspACI CCGC 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 544
BsrGI TGTACA 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 544
Bst4CI ACNGT 3 cut(s) 88, 334, 506
BstAUI TGTACA 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 100, 533
BstDEI CTNAG 1 cut(s) 358
BstF5I GGATG 1 cut(s) 316
BstHHI GCGC 1 cut(s) 531
BstMWI GCNNNNNNNGC 2 cut(s) 541, 550
BstNSI RCATGY 2 cut(s) 116, 134
BstV2I GAAGAC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 100, 533
CfoI GCGC 1 cut(s) 531
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 3 cut(s) 4, 84, 110
CviAII CATG 2 cut(s) 113, 131
CviJI RGCY 6 cut(s) 98, 480, 497, 535, 560, 582
CviKI_1 RGCY 6 cut(s) 98, 480, 497, 535, 560, 582
CviQI GTAC 3 cut(s) 4, 84, 110
DdeI CTNAG 1 cut(s) 358
DraI TTTAAA 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 562
FaeI CATG 2 cut(s) 116, 134
FaqI GGGAC 2 cut(s) 247, 269
FatI CATG 2 cut(s) 112, 130
FauNDI CATATG 1 cut(s) 420
FokI GGATG 1 cut(s) 303
FriOI GRGCYC 1 cut(s) 562
FspBI CTAG 2 cut(s) 200, 321
FspI TGCGCA 1 cut(s) 530
GlaI GCGC 1 cut(s) 530
HapII CCGG 1 cut(s) 545
HhaI GCGC 1 cut(s) 531
Hin1II CATG 2 cut(s) 116, 134
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HinfI GANTC 2 cut(s) 124, 191
HpaII CCGG 1 cut(s) 545
Hpy188I TCNGA 3 cut(s) 346, 475, 502
Hpy188III TCNNGA 2 cut(s) 200, 279
HpyCH4III ACNGT 3 cut(s) 88, 334, 506
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 5 cut(s) 13, 338, 350, 418, 553
HpyF10VI GCNNNNNNNGC 2 cut(s) 541, 550
HpyF3I CTNAG 1 cut(s) 358
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 2 cut(s) 116, 134
HspAI GCGC 1 cut(s) 529
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 5 cut(s) 122, 250, 263, 264, 558
LweI GCATC 3 cut(s) 325, 337, 576
MaeI CTAG 2 cut(s) 200, 321
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 388, 510
MboII GAAGA 3 cut(s) 82, 152, 415
MfeI CAATTG 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 562
MluCI AATT 5 cut(s) 49, 217, 283, 351, 432
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 2 cut(s) 13, 101
MnlI CCTC 1 cut(s) 363
MseI TTAA 2 cut(s) 228, 296
MslI CAYNNNNRTG 2 cut(s) 423, 545
MspI CCGG 1 cut(s) 545
MunI CAATTG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 541, 550
NdeI CATATG 1 cut(s) 420
NlaIII CATG 2 cut(s) 116, 134
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 388
NsbI TGCGCA 1 cut(s) 530
NspI RCATGY 2 cut(s) 116, 134
NspV TTCGAA 1 cut(s) 47
OliI CACNNNNGTG 1 cut(s) 545
PfeI GAWTC 1 cut(s) 191
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PsiI TTATAA 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 234
RsaI GTAC 3 cut(s) 5, 85, 111
RsaNI GTAC 3 cut(s) 4, 84, 110
RseI CAYNNNNRTG 2 cut(s) 423, 545
SaqAI TTAA 2 cut(s) 228, 296
Sau96I GGNCC 1 cut(s) 234
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 562
SetI ASST 6 cut(s) 33, 68, 343, 374, 482, 584
SfaNI GCATC 3 cut(s) 325, 337, 576
SfuI TTCGAA 1 cut(s) 47
SgrAI CRCCGGYG 1 cut(s) 544
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 2 cut(s) 423, 545
Sse9I AATT 5 cut(s) 49, 217, 283, 351, 432
SsiI CCGC 1 cut(s) 128
SspMI CTAG 2 cut(s) 200, 321
TaaI ACNGT 3 cut(s) 88, 334, 506
TaiI ACGT 1 cut(s) 343
TaqI TCGA 2 cut(s) 47, 570
TasI AATT 5 cut(s) 49, 217, 283, 351, 432
TatI WGTACW 2 cut(s) 3, 109
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 228, 296
Tru9I TTAA 2 cut(s) 228, 296
TseFI GTSAC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 3 cut(s) 210, 393, 416
TspGWI ACGGA 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 2 cut(s) 49, 217
XbaI TCTAGA 1 cut(s) 199
XceI RCATGY 2 cut(s) 116, 134
XspI CTAG 2 cut(s) 200, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.