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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18310 |
| fragaria_vesca | FvH4_5g25850 |
| malus_domestica | MD04G1026400.v1.1 |
| prunus_persica | Prupe.2G050600_v2.0.a1 |
| pyrus_communis | pycom04g02250 |
| rosa_chinensis | RchiOBHm_Chr6g0264721 RchiOBHm_Chr6g0264731 RchiOBHm_Chr7g0216331 |
| rosa_laevigata | RLG00000002581 |
| rosa_multiflora | Rmu_sc0015060.1_g000019 |
| rosa_roxburghii | Rroxscaffold_3G00243320 |
| rosa_rugosa | Rorug07G0160000 |
| rosa_samantha | Rh7AG297400 Rh7BG289700 Rh7CG317600 Rh7DG299800 |
| rosa_wichuraiana | Rw7G025300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1950 |
| Acc16I | TGCGCA | 1 cut(s) | 551 |
| AccBSI | CCGCTC | 1 cut(s) | 2181 |
| AccI | GTMKAC | 1 cut(s) | 1930 |
| AciI | CCGC | 5 cut(s) | 1326, 1588, 1744, 1765, 2179 |
| AclWI | GGATC | 2 cut(s) | 769, 1125 |
| AcsI | RAATTY | 9 cut(s) | 317, 373, 992, 1154, 1289, 1476, 1517, 1676, 1696 |
| AcuI | CTGAAG | 1 cut(s) | 804 |
| AfaI | GTAC | 4 cut(s) | 278, 1175, 1530, 1644 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 21, 1625 |
| AgeI | ACCGGT | 1 cut(s) | 365 |
| AjnI | CCWGG | 2 cut(s) | 806, 1618 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1314, 1346 |
| Alw21I | GWGCWC | 1 cut(s) | 816 |
| Alw26I | GTCTC | 1 cut(s) | 317 |
| AlwI | GGATC | 2 cut(s) | 769, 1125 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 221 |
| AoxI | GGCC | 4 cut(s) | 265, 665, 1568, 1627 |
| ApaI | GGGCCC | 1 cut(s) | 269 |
| ApeKI | GCWGC | 5 cut(s) | 916, 1105, 1590, 1746, 1904 |
| ApoI | RAATTY | 9 cut(s) | 317, 373, 992, 1154, 1289, 1476, 1517, 1676, 1696 |
| AsiGI | ACCGGT | 1 cut(s) | 365 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 321 |
| AspA2I | CCTAGG | 2 cut(s) | 1160, 1571 |
| AspLEI | GCGC | 3 cut(s) | 552, 895, 921 |
| AspS9I | GGNCC | 6 cut(s) | 92, 265, 266, 737, 1637, 2030 |
| AsuHPI | GGTGA | 3 cut(s) | 204, 380, 1634 |
| AvaII | GGWCC | 4 cut(s) | 92, 737, 1637, 2030 |
| AvrII | CCTAGG | 2 cut(s) | 1160, 1571 |
| AxyI | CCTNAGG | 1 cut(s) | 1027 |
| BaeGI | GKGCMC | 1 cut(s) | 269 |
| BanII | GRGCYC | 3 cut(s) | 269, 583, 816 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1635, 1667, 2159, 2191 |
| BbsI | GAAGAC | 2 cut(s) | 43, 960 |
| Bbv12I | GWGCWC | 1 cut(s) | 816 |
| BbvI | GCAGC | 5 cut(s) | 928, 1092, 1602, 1758, 1916 |
| BccI | CCATC | 1 cut(s) | 1835 |
| BceAI | ACGGC | 1 cut(s) | 1564 |
| BciT130I | CCWGG | 2 cut(s) | 808, 1620 |
| BclI | TGATCA | 1 cut(s) | 1816 |
| BcoDI | GTCTC | 1 cut(s) | 317 |
| BfaI | CTAG | 6 cut(s) | 501, 837, 1037, 1161, 1572, 1908 |
| BfmI | CTRYAG | 1 cut(s) | 1195 |
| BglII | AGATCT | 1 cut(s) | 823 |
| BisI | GCNGC | 7 cut(s) | 917, 1106, 1588, 1591, 1744, 1747, 1905 |
| BlnI | CCTAGG | 2 cut(s) | 1160, 1571 |
| BlpI | GCTNAGC | 1 cut(s) | 1739 |
| BlsI | GCNGC | 7 cut(s) | 918, 1107, 1589, 1592, 1745, 1748, 1906 |
| Bme1390I | CCNGG | 2 cut(s) | 808, 1620 |
| Bme18I | GGWCC | 4 cut(s) | 92, 737, 1637, 2030 |
| BmgT120I | GGNCC | 6 cut(s) | 92, 265, 266, 737, 1637, 2030 |
| BmiI | GGNNCC | 4 cut(s) | 93, 267, 1260, 1638 |
| BmrFI | CCNGG | 2 cut(s) | 808, 1620 |
| BmsI | GCATC | 6 cut(s) | 552, 597, 880, 1067, 1222, 2065 |
| BpiI | GAAGAC | 2 cut(s) | 43, 960 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1739 |
| BpuEI | CTTGAG | 1 cut(s) | 1248 |
| BsaBI | GATNNNNATC | 1 cut(s) | 438 |
| BsaJI | CCNNGG | 4 cut(s) | 807, 1160, 1437, 1571 |
| BsaWI | WCCGGW | 2 cut(s) | 365, 1639 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 729, 759 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 21, 1625 |
| Bse118I | RCCGGY | 3 cut(s) | 365, 565, 1897 |
| Bse21I | CCTNAGG | 1 cut(s) | 1027 |
| Bse3DI | GCAATG | 1 cut(s) | 581 |
| Bse8I | GATNNNNATC | 1 cut(s) | 438 |
| BseBI | CCWGG | 2 cut(s) | 808, 1620 |
| BseDI | CCNNGG | 4 cut(s) | 807, 1160, 1437, 1571 |
| BseGI | GGATG | 3 cut(s) | 655, 1237, 2003 |
| BseJI | GATNNNNATC | 1 cut(s) | 438 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 21, 1625 |
| BseMI | GCAATG | 1 cut(s) | 581 |
| BseMII | CTCAG | 3 cut(s) | 1041, 1556, 2099 |
| BseRI | GAGGAG | 3 cut(s) | 199, 216, 1429 |
| BseSI | GKGCMC | 1 cut(s) | 269 |
| BseXI | GCAGC | 5 cut(s) | 928, 1092, 1602, 1758, 1916 |
| BseYI | CCCAGC | 1 cut(s) | 937 |
| BshFI | GGCC | 4 cut(s) | 267, 667, 1570, 1629 |
| BshTI | ACCGGT | 1 cut(s) | 365 |
| BsiHKAI | GWGCWC | 1 cut(s) | 816 |
| BsiSI | CCGG | 4 cut(s) | 366, 566, 1640, 1898 |
| BslFI | GGGAC | 1 cut(s) | 2067 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 21, 1625 |
| BsmAI | GTCTC | 1 cut(s) | 317 |
| BsmBI | CGTCTC | 1 cut(s) | 317 |
| BsmFI | GGGAC | 1 cut(s) | 2067 |
| BsmI | GAATGC | 2 cut(s) | 851, 1328 |
| BsnI | GGCC | 4 cut(s) | 267, 667, 1570, 1629 |
| Bsp120I | GGGCCC | 1 cut(s) | 265 |
| Bsp1286I | GDGCHC | 3 cut(s) | 269, 583, 816 |
| Bsp143I | GATC | 6 cut(s) | 761, 823, 1117, 1343, 1816, 2047 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1739 |
| Bsp19I | CCATGG | 1 cut(s) | 1437 |
| BspACI | CCGC | 5 cut(s) | 1326, 1588, 1744, 1765, 2179 |
| BspANI | GGCC | 4 cut(s) | 267, 667, 1570, 1629 |
| BspCNI | CTCAG | 3 cut(s) | 1040, 1555, 2100 |
| BspHI | TCATGA | 2 cut(s) | 1294, 1672 |
| BspLI | GGNNCC | 4 cut(s) | 93, 267, 1260, 1638 |
| BspPI | GGATC | 2 cut(s) | 769, 1125 |
| BsrBI | CCGCTC | 1 cut(s) | 2181 |
| BsrDI | GCAATG | 1 cut(s) | 581 |
| BsrFI | RCCGGY | 3 cut(s) | 365, 565, 1897 |
| BssAI | RCCGGY | 3 cut(s) | 365, 565, 1897 |
| BssECI | CCNNGG | 4 cut(s) | 807, 1160, 1437, 1571 |
| BssMI | GATC | 6 cut(s) | 761, 823, 1117, 1343, 1816, 2047 |
| BssT1I | CCWWGG | 3 cut(s) | 1160, 1437, 1571 |
| Bst2UI | CCWGG | 2 cut(s) | 808, 1620 |
| Bst4CI | ACNGT | 3 cut(s) | 311, 624, 834 |
| Bst6I | CTCTTC | 8 cut(s) | 38, 234, 247, 517, 870, 1656, 1842, 2123 |
| BstC8I | GCNNGC | 6 cut(s) | 554, 601, 1385, 1389, 1393, 1774 |
| BstDEI | CTNAG | 8 cut(s) | 788, 900, 1027, 1254, 1542, 1739, 2108, 2140 |
| BstDSI | CCRYGG | 1 cut(s) | 1437 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1623 |
| BstF5I | GGATG | 3 cut(s) | 655, 1237, 2003 |
| BstHHI | GCGC | 3 cut(s) | 552, 895, 921 |
| BstKTI | GATC | 6 cut(s) | 764, 826, 1120, 1346, 1819, 2050 |
| BstMAI | GTCTC | 1 cut(s) | 317 |
| BstMBI | GATC | 6 cut(s) | 761, 823, 1117, 1343, 1816, 2047 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 562, 571, 1576 |
| BstNI | CCWGG | 2 cut(s) | 808, 1620 |
| BstSCI | CCNGG | 2 cut(s) | 806, 1618 |
| BstSFI | CTRYAG | 1 cut(s) | 1195 |
| BstSLI | GKGCMC | 1 cut(s) | 269 |
| BstV1I | GCAGC | 5 cut(s) | 928, 1092, 1602, 1758, 1916 |
| BstV2I | GAAGAC | 2 cut(s) | 43, 960 |
| BstX2I | RGATCY | 1 cut(s) | 823 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1780 |
| BstYI | RGATCY | 1 cut(s) | 823 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1027 |
| BsuRI | GGCC | 4 cut(s) | 267, 667, 1570, 1629 |
| BtgI | CCRYGG | 1 cut(s) | 1437 |
| BtsCI | GGATG | 3 cut(s) | 655, 1237, 2003 |
| BtsIMutI | CAGTG | 1 cut(s) | 1007 |
| Cac8I | GCNNGC | 6 cut(s) | 554, 601, 1385, 1389, 1393, 1774 |
| CaiI | CAGNNNCTG | 1 cut(s) | 221 |
| CciI | TCATGA | 2 cut(s) | 1294, 1672 |
| CfoI | GCGC | 3 cut(s) | 552, 895, 921 |
| Cfr10I | RCCGGY | 3 cut(s) | 365, 565, 1897 |
| Cfr13I | GGNCC | 6 cut(s) | 92, 265, 266, 737, 1637, 2030 |
| CsiI | ACCWGGT | 1 cut(s) | 1618 |
| Csp6I | GTAC | 4 cut(s) | 277, 1174, 1529, 1643 |
| CspAI | ACCGGT | 1 cut(s) | 365 |
| CviAII | CATG | 9 cut(s) | 1094, 1142, 1295, 1319, 1400, 1438, 1673, 1762, 2086 |
| CviQI | GTAC | 4 cut(s) | 277, 1174, 1529, 1643 |
| DdeI | CTNAG | 8 cut(s) | 788, 900, 1027, 1254, 1542, 1739, 2108, 2140 |
| DpnI | GATC | 6 cut(s) | 763, 825, 1119, 1345, 1818, 2049 |
| DpnII | GATC | 6 cut(s) | 761, 823, 1117, 1343, 1816, 2047 |
| DraI | TTTAAA | 2 cut(s) | 885, 1371 |
| Eam1104I | CTCTTC | 8 cut(s) | 38, 234, 247, 517, 870, 1656, 1842, 2123 |
| EarI | CTCTTC | 8 cut(s) | 38, 234, 247, 517, 870, 1656, 1842, 2123 |
| Ecl136II | GAGCTC | 1 cut(s) | 814 |
| Eco130I | CCWWGG | 3 cut(s) | 1160, 1437, 1571 |
| Eco147I | AGGCCT | 2 cut(s) | 1570, 1629 |
| Eco24I | GRGCYC | 3 cut(s) | 269, 583, 816 |
| Eco47I | GGWCC | 4 cut(s) | 92, 737, 1637, 2030 |
| Eco53kI | GAGCTC | 1 cut(s) | 814 |
| Eco57I | CTGAAG | 1 cut(s) | 804 |
| Eco81I | CCTNAGG | 1 cut(s) | 1027 |
| EcoICRI | GAGCTC | 1 cut(s) | 814 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1623 |
| EcoO109I | RGGNCCY | 2 cut(s) | 92, 266 |
| EcoRI | GAATTC | 3 cut(s) | 317, 373, 1517 |
| EcoRII | CCWGG | 2 cut(s) | 806, 1618 |
| EcoT14I | CCWWGG | 3 cut(s) | 1160, 1437, 1571 |
| EcoT38I | GRGCYC | 3 cut(s) | 269, 583, 816 |
| ErhI | CCWWGG | 3 cut(s) | 1160, 1437, 1571 |
| Esp3I | CGTCTC | 1 cut(s) | 317 |
| FaeI | CATG | 9 cut(s) | 1097, 1145, 1298, 1322, 1403, 1441, 1676, 1765, 2089 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 879, 911, 1794, 1826 |
| FaqI | GGGAC | 1 cut(s) | 2067 |
| FatI | CATG | 9 cut(s) | 1093, 1141, 1294, 1318, 1399, 1437, 1672, 1761, 2085 |
| FauI | CCCGC | 1 cut(s) | 1758 |
| FbaI | TGATCA | 1 cut(s) | 1816 |
| FblI | GTMKAC | 1 cut(s) | 1930 |
| Fnu4HI | GCNGC | 7 cut(s) | 917, 1106, 1588, 1591, 1744, 1747, 1905 |
| FokI | GGATG | 3 cut(s) | 662, 1244, 1990 |
| FriOI | GRGCYC | 3 cut(s) | 269, 583, 816 |
| Fsp4HI | GCNGC | 7 cut(s) | 917, 1106, 1588, 1591, 1744, 1747, 1905 |
| FspBI | CTAG | 6 cut(s) | 501, 837, 1037, 1161, 1572, 1908 |
| FspI | TGCGCA | 1 cut(s) | 551 |
| GlaI | GCGC | 3 cut(s) | 551, 894, 920 |
| GluI | GCNGC | 7 cut(s) | 917, 1106, 1588, 1591, 1744, 1747, 1905 |
| GsaI | CCCAGC | 1 cut(s) | 941 |
| HaeIII | GGCC | 4 cut(s) | 267, 667, 1570, 1629 |
| HapII | CCGG | 4 cut(s) | 366, 566, 1640, 1898 |
| HhaI | GCGC | 3 cut(s) | 552, 895, 921 |
| Hin1II | CATG | 9 cut(s) | 1097, 1145, 1298, 1322, 1403, 1441, 1676, 1765, 2089 |
| Hin6I | GCGC | 3 cut(s) | 550, 893, 919 |
| HinP1I | GCGC | 3 cut(s) | 550, 893, 919 |
| HinfI | GANTC | 8 cut(s) | 218, 490, 674, 1067, 1088, 1862, 2096, 2192 |
| HpaII | CCGG | 4 cut(s) | 366, 566, 1640, 1898 |
| HphI | GGTGA | 3 cut(s) | 204, 380, 1634 |
| Hpy166II | GTNNAC | 3 cut(s) | 955, 1495, 1931 |
| Hpy8I | GTNNAC | 3 cut(s) | 955, 1495, 1931 |
| HpyCH4III | ACNGT | 3 cut(s) | 311, 624, 834 |
| HpyCH4IV | ACGT | 2 cut(s) | 288, 426 |
| HpyCH4V | TGCA | 9 cut(s) | 574, 687, 1058, 1108, 1235, 1308, 1450, 1615, 1904 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 562, 571, 1576 |
| HpyF3I | CTNAG | 8 cut(s) | 788, 900, 1027, 1254, 1542, 1739, 2108, 2140 |
| HpySE526I | ACGT | 2 cut(s) | 288, 426 |
| Hsp92II | CATG | 9 cut(s) | 1097, 1145, 1298, 1322, 1403, 1441, 1676, 1765, 2089 |
| HspAI | GCGC | 3 cut(s) | 550, 893, 919 |
| Ksp22I | TGATCA | 1 cut(s) | 1816 |
| Kzo9I | GATC | 6 cut(s) | 761, 823, 1117, 1343, 1816, 2047 |
| LmnI | GCTCC | 5 cut(s) | 229, 784, 811, 819, 1441 |
| Lsp1109I | GCAGC | 5 cut(s) | 928, 1092, 1602, 1758, 1916 |
| LweI | GCATC | 6 cut(s) | 552, 597, 880, 1067, 1222, 2065 |
| MabI | ACCWGGT | 1 cut(s) | 1618 |
| MaeI | CTAG | 6 cut(s) | 501, 837, 1037, 1161, 1572, 1908 |
| MaeII | ACGT | 2 cut(s) | 288, 426 |
| MaeIII | GTNAC | 4 cut(s) | 531, 1314, 1431, 1822 |
| MalI | GATC | 6 cut(s) | 763, 825, 1119, 1345, 1818, 2049 |
| MbiI | CCGCTC | 1 cut(s) | 2181 |
| MboI | GATC | 6 cut(s) | 761, 823, 1117, 1343, 1816, 2047 |
| MfeI | CAATTG | 3 cut(s) | 756, 1362, 1451 |
| MflI | RGATCY | 1 cut(s) | 823 |
| MhlI | GDGCHC | 3 cut(s) | 269, 583, 816 |
| MlyI | GAGTC | 2 cut(s) | 1856, 2105 |
| MmeI | TCCRAC | 2 cut(s) | 1407, 2008 |
| MroXI | GAANNNNTTC | 1 cut(s) | 321 |
| MslI | CAYNNNNRTG | 1 cut(s) | 661 |
| MspA1I | CMGCKG | 1 cut(s) | 1749 |
| MspI | CCGG | 4 cut(s) | 366, 566, 1640, 1898 |
| MspR9I | CCNGG | 2 cut(s) | 808, 1620 |
| MunI | CAATTG | 3 cut(s) | 756, 1362, 1451 |
| Mva1269I | GAATGC | 2 cut(s) | 851, 1328 |
| MvaI | CCWGG | 2 cut(s) | 808, 1620 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 562, 571, 1576 |
| NcoI | CCATGG | 1 cut(s) | 1437 |
| NdeII | GATC | 6 cut(s) | 761, 823, 1117, 1343, 1816, 2047 |
| NlaIII | CATG | 9 cut(s) | 1097, 1145, 1298, 1322, 1403, 1441, 1676, 1765, 2089 |
| NlaIV | GGNNCC | 4 cut(s) | 93, 267, 1260, 1638 |
| NmuCI | GTSAC | 1 cut(s) | 1822 |
| NsbI | TGCGCA | 1 cut(s) | 551 |
| PagI | TCATGA | 2 cut(s) | 1294, 1672 |
| PceI | AGGCCT | 2 cut(s) | 1570, 1629 |
| PctI | GAATGC | 2 cut(s) | 851, 1328 |
| PdmI | GAANNNNTTC | 1 cut(s) | 321 |
| PfeI | GAWTC | 6 cut(s) | 218, 490, 674, 1067, 1088, 2192 |
| PinAI | ACCGGT | 1 cut(s) | 365 |
| PkrI | GCNGC | 7 cut(s) | 918, 1107, 1589, 1592, 1745, 1748, 1906 |
| PleI | GAGTC | 2 cut(s) | 1856, 2104 |
| PpsI | GAGTC | 2 cut(s) | 1856, 2104 |
| PpuMI | RGGWCCY | 1 cut(s) | 92 |
| PsiI | TTATAA | 1 cut(s) | 1950 |
| Psp124BI | GAGCTC | 1 cut(s) | 816 |
| Psp5II | RGGWCCY | 1 cut(s) | 92 |
| Psp6I | CCWGG | 2 cut(s) | 806, 1618 |
| PspFI | CCCAGC | 1 cut(s) | 937 |
| PspGI | CCWGG | 2 cut(s) | 806, 1618 |
| PspN4I | GGNNCC | 4 cut(s) | 93, 267, 1260, 1638 |
| PspOMI | GGGCCC | 1 cut(s) | 265 |
| PspPI | GGNCC | 6 cut(s) | 92, 265, 266, 737, 1637, 2030 |
| PspPPI | RGGWCCY | 1 cut(s) | 92 |
| PstNI | CAGNNNCTG | 1 cut(s) | 221 |
| PsuI | RGATCY | 1 cut(s) | 823 |
| PvuII | CAGCTG | 1 cut(s) | 1749 |
| RsaI | GTAC | 4 cut(s) | 278, 1175, 1530, 1644 |
| RsaNI | GTAC | 4 cut(s) | 277, 1174, 1529, 1643 |
| RseI | CAYNNNNRTG | 1 cut(s) | 661 |
| SacI | GAGCTC | 1 cut(s) | 816 |
| SatI | GCNGC | 7 cut(s) | 917, 1106, 1588, 1591, 1744, 1747, 1905 |
| Sau3AI | GATC | 6 cut(s) | 761, 823, 1117, 1343, 1816, 2047 |
| Sau96I | GGNCC | 6 cut(s) | 92, 265, 266, 737, 1637, 2030 |
| SchI | GAGTC | 2 cut(s) | 1856, 2105 |
| ScrFI | CCNGG | 2 cut(s) | 808, 1620 |
| SduI | GDGCHC | 3 cut(s) | 269, 583, 816 |
| SexAI | ACCWGGT | 1 cut(s) | 1618 |
| SfaNI | GCATC | 6 cut(s) | 552, 597, 880, 1067, 1222, 2065 |
| SfcI | CTRYAG | 1 cut(s) | 1195 |
| SinI | GGWCC | 4 cut(s) | 92, 737, 1637, 2030 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 661 |
| SmlI | CTYRAG | 1 cut(s) | 1263 |
| SmoI | CTYRAG | 1 cut(s) | 1263 |
| SseBI | AGGCCT | 2 cut(s) | 1570, 1629 |
| SsiI | CCGC | 5 cut(s) | 1326, 1588, 1744, 1765, 2179 |
| SspI | AATATT | 2 cut(s) | 87, 1302 |
| SspMI | CTAG | 6 cut(s) | 501, 837, 1037, 1161, 1572, 1908 |
| SstI | GAGCTC | 1 cut(s) | 816 |
| StuI | AGGCCT | 2 cut(s) | 1570, 1629 |
| StyD4I | CCNGG | 2 cut(s) | 806, 1618 |
| StyI | CCWWGG | 3 cut(s) | 1160, 1437, 1571 |
| TaaI | ACNGT | 3 cut(s) | 311, 624, 834 |
| TaiI | ACGT | 2 cut(s) | 291, 429 |
| TaqI | TCGA | 6 cut(s) | 315, 396, 591, 644, 1137, 2099 |
| TatI | WGTACW | 1 cut(s) | 276 |
| TauI | GCSGC | 2 cut(s) | 1590, 1746 |
| TfiI | GAWTC | 6 cut(s) | 218, 490, 674, 1067, 1088, 2192 |
| TscAI | CASTG | 1 cut(s) | 1014 |
| TseFI | GTSAC | 1 cut(s) | 1822 |
| TseI | GCWGC | 5 cut(s) | 916, 1105, 1590, 1746, 1904 |
| Tsp45I | GTSAC | 1 cut(s) | 1822 |
| TspRI | CASTG | 1 cut(s) | 1014 |
| VpaK11BI | GGWCC | 4 cut(s) | 92, 737, 1637, 2030 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1623 |
| XapI | RAATTY | 9 cut(s) | 317, 373, 992, 1154, 1289, 1476, 1517, 1676, 1696 |
| XmaJI | CCTAGG | 2 cut(s) | 1160, 1571 |
| XmiI | GTMKAC | 1 cut(s) | 1930 |
| XmnI | GAANNNNTTC | 1 cut(s) | 321 |
| XspI | CTAG | 6 cut(s) | 501, 837, 1037, 1161, 1572, 1908 |