MD04G1095100.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
17482948 .. 17487002
4055 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1095100.v1.1.491

Sequence Viewer

Length: 1437 bp
ATGAAGTGCTTCTCATTCTACATTGGAGAAAAGAAGGCCGAACCAAAGAGTACAAATACAACTTTTACCGATGTTGATATGAAGAGATCTGGATCTGAGTTAGATTCACAGAATATCTCTGATGCGAGCACAGAATCCCTGAGGAGGAACCAATATCCTAGTTTCTCTCAGAGACCCAGCAACCTCAGAGTATTCTCAGTTTCGGAGCTGAAGTCTGCCACGAAGAACTTTAGCCGCTCTGTCATGGTTGGAGAGGGCGGGTTTGGGTGTGTCTATAAAGGACTGATTAAAAGTGAAGAAGATCCTTCTAAAAAACTTGAAGTTGCTGTGAAACAGCTCAGTAAAAGAGGCTTGCAGGCAAGACTGTTTTTCAATTGGCATAACTTTGATAGTTTATACAGATTCTTTTTCATTATCTGCAATTCTGCGTTAAACTTTTTTTGTGATTTAAATGGGCACAAGGAATGGGTGACAGAAGTTAATGTTCTTGGGGTGGTCGAGCATCCAAACCTTGTCAAACTAGTGGGCTACTGTGCTGAGGATGATGAACGAGGAATCCAACGACTTCTAATTTATGAATACATGCCTAATGGAAGTGTAGAGAACCATTTAGCCAGTCGTTTAGATCCTCTTTCATGGGCCATGAGATTGAGAATAGCACAAGATGCTGCTCGTGGCTTGGCATACTTACATGAAGAAATGGACTTTCAGATCATTTTCAGGGATTTTAAATCTTCAAATATTCTTCTGGATGATCAATGGAATGCAAAGCTATCAGATTTCGGAATGGCTAGGTTGGGCCCGTCAGAAGGATTAACCCACGTCTCAACAGCGGTTGTTGGAACCATGGGATACGCAGCACCTGAGTATATCCAGACCGGACGTCTAACATCTAAGAATGATGTGTGGAGCTATGGGGTCTTCCTTTATGAACTCATCACAGGTAGGCGTCCTCTAGATCGAAACCGCCCTAAGAATGAGCAGAAGCTCTTAGAGTGGGTAAAGCCTTACCTGTCAGACGTGAAGAAGTTCCGGCTAATAATAGACTCTAAGCTTGAAGGTAAATACCCCCTCAAATCAGCTCAAAAGCTTGCAATTGTAGCCAACAAATGCTTGGTCAGACTCCCCAAGAATCGTCCAAAGATGAGCGAGGTATTGGAGATGGTAAATCAAATTATAGAGGCTCCATCAGGCCAAAGGAAAACTATGGAGGTACCCTCAATCGAAAAGAAAATAAGGGAGGCACCATCAAGCCAAAACAAGTTTACGAAGACACCAACAGGAACGGAAAGTCAGCAACTGCCCCCTAAGAATTTGGCACCAATAGAAACTTGCCGGGATGTTGAAACAATGAACAAGAGAAGAAATATGGATTTGAGGAGAGAAACTGGATGGTTGTCTTGCTCGTGGACACCAAAACTTTTAAGGACAAGCTGA

Protein Analysis

479

Amino Acids

54.65

Weight (kDa)

9.3

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 153 - 387 4e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 154 - 387 1.5e-39 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 886
Acc65I GGTACC 1 cut(s) 1213
AccB1I GGYRCC 3 cut(s) 1213, 1243, 1318
AccBSI CCGCTC 1 cut(s) 237
AciI CCGC 4 cut(s) 235, 258, 833, 967
AclWI GGATC 3 cut(s) 100, 296, 620
AcsI RAATTY 1 cut(s) 1312
AcuI CTGAAG 1 cut(s) 230
AcyI GRCGYC 2 cut(s) 883, 949
AfaI GTAC 2 cut(s) 52, 1215
AfiI CCNNNNNNNGG 2 cut(s) 144, 809
AgsI TTSAA 5 cut(s) 320, 373, 738, 1058, 1346
AhdI GACNNNNNGTC 1 cut(s) 882
AhlI ACTAGT 1 cut(s) 520
AjiI CACGTC 2 cut(s) 823, 1021
AloI GAACNNNNNNTCC 2 cut(s) 540, 572
AluBI AGCT 9 cut(s) 208, 337, 772, 912, 988, 1054, 1082, 1090, 1434
AluI AGCT 9 cut(s) 208, 337, 772, 912, 988, 1054, 1082, 1090, 1434
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 2 cut(s) 166, 829
AlwI GGATC 3 cut(s) 100, 296, 620
AlwNI CAGNNNCTG 2 cut(s) 863, 1300
AoxI GGCC 4 cut(s) 36, 639, 799, 1192
ApaI GGGCCC 1 cut(s) 803
ApeKI GCWGC 2 cut(s) 668, 857
ApoI RAATTY 1 cut(s) 1312
ArsI GACNNNNNNTTYG 2 cut(s) 1101, 1133
Asp700I GAANNNNTTC 2 cut(s) 8, 1028
Asp718I GGTACC 1 cut(s) 1213
AspS9I GGNCC 3 cut(s) 639, 799, 800
AsuC2I CCSGG 1 cut(s) 1337
AsuHPI GGTGA 1 cut(s) 481
AxyI CCTNAGG 1 cut(s) 140
BaeGI GKGCMC 2 cut(s) 459, 803
BanI GGYRCC 3 cut(s) 1213, 1243, 1318
BanII GRGCYC 1 cut(s) 803
BauI CACGAG 2 cut(s) 672, 1405
BbsI GAAGAC 2 cut(s) 913, 1277
Bbv12I GWGCWC 1 cut(s) 131
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 655, 869
BccI CCATC 4 cut(s) 1156, 1195, 1255, 1386
BciVI GTATCC 1 cut(s) 845
BclI TGATCA 1 cut(s) 754
BcnI CCSGG 1 cut(s) 1337
BcoDI GTCTC 2 cut(s) 166, 829
BcuI ACTAGT 1 cut(s) 520
BfaI CTAG 4 cut(s) 159, 521, 792, 956
BfuI GTATCC 1 cut(s) 845
BglII AGATCT 1 cut(s) 86
BisI GCNGC 3 cut(s) 235, 669, 858
BlsI GCNGC 3 cut(s) 236, 670, 859
Bme1390I CCNGG 1 cut(s) 1337
BmeRI GACNNNNNGTC 1 cut(s) 882
BmgBI CACGTC 2 cut(s) 823, 1021
BmgT120I GGNCC 3 cut(s) 639, 799, 800
BmiI GGNNCC 7 cut(s) 149, 801, 844, 1185, 1215, 1245, 1320
BmrFI CCNGG 1 cut(s) 1337
BmsI GCATC 3 cut(s) 112, 511, 655
BpiI GAAGAC 2 cut(s) 913, 1277
BplI GAGNNNNNCTC 2 cut(s) 1202, 1234
Bpu10I CCTNAGC 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 1337
BsaBI GATNNNNATC 1 cut(s) 91
BsaHI GRCGYC 2 cut(s) 883, 949
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 846
BsaWI WCCGGW 1 cut(s) 878
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 809
Bse1I ACTGG 2 cut(s) 615, 1393
Bse21I CCTNAGG 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 846
BseGI GGATG 5 cut(s) 502, 547, 757, 1345, 1397
BseJI GATNNNNATC 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 144, 809
BseMII CTCAG 8 cut(s) 87, 131, 182, 199, 210, 352, 528, 855
BseNI ACTGG 2 cut(s) 615, 1393
BseRI GAGGAG 2 cut(s) 157, 1393
BseSI GKGCMC 2 cut(s) 459, 803
BseXI GCAGC 2 cut(s) 655, 869
BseYI CCCAGC 1 cut(s) 176
BshFI GGCC 4 cut(s) 38, 641, 801, 1194
BshNI GGYRCC 3 cut(s) 1213, 1243, 1318
BsiHKAI GWGCWC 1 cut(s) 131
BsiSI CCGG 3 cut(s) 879, 1033, 1336
BslI CCNNNNNNNGG 2 cut(s) 144, 809
BsmAI GTCTC 2 cut(s) 166, 829
BsmBI CGTCTC 1 cut(s) 829
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 4 cut(s) 38, 641, 801, 1194
Bso31I GGTCTC 1 cut(s) 166
Bsp120I GGGCCC 1 cut(s) 799
Bsp1286I GDGCHC 3 cut(s) 131, 459, 803
Bsp143I GATC 7 cut(s) 86, 92, 301, 625, 711, 754, 958
Bsp19I CCATGG 1 cut(s) 846
BspACI CCGC 4 cut(s) 235, 258, 833, 967
BspANI GGCC 4 cut(s) 38, 641, 801, 1194
BspCNI CTCAG 8 cut(s) 88, 132, 181, 198, 209, 351, 529, 856
BspLI GGNNCC 7 cut(s) 149, 801, 844, 1185, 1215, 1245, 1320
BspPI GGATC 3 cut(s) 100, 296, 620
BspT107I GGYRCC 3 cut(s) 1213, 1243, 1318
BspTNI GGTCTC 1 cut(s) 166
BsrBI CCGCTC 1 cut(s) 237
BsrI ACTGG 2 cut(s) 615, 1393
BssECI CCNNGG 1 cut(s) 846
BssMI GATC 7 cut(s) 86, 92, 301, 625, 711, 754, 958
BssNI GRCGYC 2 cut(s) 883, 949
BssSI CACGAG 2 cut(s) 672, 1405
BssT1I CCWWGG 1 cut(s) 846
Bst2BI CACGAG 2 cut(s) 672, 1405
Bst4CI ACNGT 2 cut(s) 366, 533
Bst6I CTCTTC 1 cut(s) 77
BstACI GRCGYC 2 cut(s) 883, 949
BstAPI GCANNNNNTGC 1 cut(s) 665
BstC8I GCNNGC 4 cut(s) 127, 353, 357, 1092
BstDSI CCRYGG 1 cut(s) 846
BstF5I GGATG 5 cut(s) 502, 547, 757, 1345, 1397
BstKTI GATC 7 cut(s) 89, 95, 304, 628, 714, 757, 961
BstMAI GTCTC 2 cut(s) 166, 829
BstMBI GATC 7 cut(s) 86, 92, 301, 625, 711, 754, 958
BstMWI GCNNNNNNNGC 2 cut(s) 665, 1100
BstNSI RCATGY 1 cut(s) 586
BstSCI CCNGG 1 cut(s) 1335
BstSLI GKGCMC 2 cut(s) 459, 803
BstV1I GCAGC 2 cut(s) 655, 869
BstV2I GAAGAC 2 cut(s) 913, 1277
BstX2I RGATCY 4 cut(s) 86, 92, 301, 625
BstYI RGATCY 4 cut(s) 86, 92, 301, 625
Bsu36I CCTNAGG 1 cut(s) 140
BsuI GTATCC 1 cut(s) 845
BsuRI GGCC 4 cut(s) 38, 641, 801, 1194
BtgI CCRYGG 1 cut(s) 846
BtrI CACGTC 2 cut(s) 823, 1021
BtsCI GGATG 5 cut(s) 502, 547, 757, 1345, 1397
Cac8I GCNNGC 4 cut(s) 127, 353, 357, 1092
CaiI CAGNNNCTG 2 cut(s) 863, 1300
Cfr13I GGNCC 3 cut(s) 639, 799, 800
CseI GACGC 1 cut(s) 938
Csp6I GTAC 2 cut(s) 51, 1214
CviAII CATG 6 cut(s) 244, 583, 636, 643, 692, 847
CviQI GTAC 2 cut(s) 51, 1214
DpnI GATC 7 cut(s) 88, 94, 303, 627, 713, 756, 960
DpnII GATC 7 cut(s) 86, 92, 301, 625, 711, 754, 958
DraI TTTAAA 2 cut(s) 450, 730
DriI GACNNNNNGTC 1 cut(s) 882
Eam1104I CTCTTC 1 cut(s) 77
Eam1105I GACNNNNNGTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 846
Eco24I GRGCYC 1 cut(s) 803
Eco31I GGTCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 230
Eco81I CCTNAGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 846
EcoT38I GRGCYC 1 cut(s) 803
ErhI CCWWGG 1 cut(s) 846
Esp3I CGTCTC 1 cut(s) 829
FaeI CATG 6 cut(s) 247, 586, 639, 646, 695, 850
FatI CATG 6 cut(s) 243, 582, 635, 642, 691, 846
FauI CCCGC 1 cut(s) 251
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 3 cut(s) 235, 669, 858
FokI GGATG 5 cut(s) 489, 554, 764, 1352, 1404
FriOI GRGCYC 1 cut(s) 803
Fsp4HI GCNGC 3 cut(s) 235, 669, 858
FspBI CTAG 4 cut(s) 159, 521, 792, 956
GluI GCNGC 3 cut(s) 235, 669, 858
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 4 cut(s) 38, 641, 801, 1194
HapII CCGG 3 cut(s) 879, 1033, 1336
HgaI GACGC 1 cut(s) 938
Hin1I GRCGYC 2 cut(s) 883, 949
Hin1II CATG 6 cut(s) 247, 586, 639, 646, 695, 850
HindIII AAGCTT 2 cut(s) 1052, 1088
HinfI GANTC 7 cut(s) 104, 134, 402, 555, 1046, 1122, 1132
HpaII CCGG 3 cut(s) 879, 1033, 1336
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 2 cut(s) 1266, 1410
Hpy188III TCNNGA 4 cut(s) 90, 749, 874, 956
Hpy8I GTNNAC 2 cut(s) 1266, 1410
HpyAV CCTTC 4 cut(s) 28, 315, 803, 1052
HpyCH4III ACNGT 2 cut(s) 366, 533
HpyCH4IV ACGT 3 cut(s) 822, 883, 1020
HpyCH4V TGCA 4 cut(s) 355, 420, 767, 1094
HpyF10VI GCNNNNNNNGC 2 cut(s) 665, 1100
HpySE526I ACGT 3 cut(s) 822, 883, 1020
Hsp92I GRCGYC 2 cut(s) 883, 949
Hsp92II CATG 6 cut(s) 247, 586, 639, 646, 695, 850
KpnI GGTACC 1 cut(s) 1217
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 7 cut(s) 86, 92, 301, 625, 711, 754, 958
LmnI GCTCC 3 cut(s) 205, 909, 1189
Lsp1109I GCAGC 2 cut(s) 655, 869
LweI GCATC 3 cut(s) 112, 511, 655
MaeI CTAG 4 cut(s) 159, 521, 792, 956
MaeII ACGT 3 cut(s) 822, 883, 1020
MaeIII GTNAC 1 cut(s) 469
MalI GATC 7 cut(s) 88, 94, 303, 627, 713, 756, 960
MbiI CCGCTC 1 cut(s) 237
MboI GATC 7 cut(s) 86, 92, 301, 625, 711, 754, 958
MfeI CAATTG 2 cut(s) 373, 1095
MflI RGATCY 4 cut(s) 86, 92, 301, 625
MhlI GDGCHC 3 cut(s) 131, 459, 803
MluCI AATT 6 cut(s) 373, 421, 570, 1095, 1173, 1312
MlyI GAGTC 2 cut(s) 1040, 1116
MmeI TCCRAC 3 cut(s) 229, 583, 820
MroXI GAANNNNTTC 2 cut(s) 8, 1028
MseI TTAA 7 cut(s) 288, 431, 449, 480, 729, 815, 1424
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 3 cut(s) 879, 1033, 1336
MspR9I CCNGG 1 cut(s) 1337
MunI CAATTG 2 cut(s) 373, 1095
Mva1269I GAATGC 1 cut(s) 769
MwoI GCNNNNNNNGC 2 cut(s) 665, 1100
NciI CCSGG 1 cut(s) 1337
NcoI CCATGG 1 cut(s) 846
NdeII GATC 7 cut(s) 86, 92, 301, 625, 711, 754, 958
NlaIII CATG 6 cut(s) 247, 586, 639, 646, 695, 850
NlaIV GGNNCC 7 cut(s) 149, 801, 844, 1185, 1215, 1245, 1320
NmuCI GTSAC 1 cut(s) 469
NspI RCATGY 1 cut(s) 586
PctI GAATGC 1 cut(s) 769
PdmI GAANNNNTTC 2 cut(s) 8, 1028
PfeI GAWTC 5 cut(s) 104, 134, 402, 555, 1132
PkrI GCNGC 3 cut(s) 236, 670, 859
PleI GAGTC 2 cut(s) 1040, 1116
PpsI GAGTC 2 cut(s) 1040, 1116
PspFI CCCAGC 1 cut(s) 176
PspN4I GGNNCC 7 cut(s) 149, 801, 844, 1185, 1215, 1245, 1320
PspOMI GGGCCC 1 cut(s) 799
PspPI GGNCC 3 cut(s) 639, 799, 800
PstNI CAGNNNCTG 2 cut(s) 863, 1300
PsuI RGATCY 4 cut(s) 86, 92, 301, 625
RsaI GTAC 2 cut(s) 52, 1215
RsaNI GTAC 2 cut(s) 51, 1214
SaqAI TTAA 7 cut(s) 288, 431, 449, 480, 729, 815, 1424
SatI GCNGC 3 cut(s) 235, 669, 858
Sau3AI GATC 7 cut(s) 86, 92, 301, 625, 711, 754, 958
Sau96I GGNCC 3 cut(s) 639, 799, 800
SchI GAGTC 2 cut(s) 1040, 1116
ScrFI CCNGG 1 cut(s) 1337
SduI GDGCHC 3 cut(s) 131, 459, 803
SfaNI GCATC 3 cut(s) 112, 511, 655
SmiI ATTTAAAT 1 cut(s) 450
SpeI ACTAGT 1 cut(s) 520
Sse9I AATT 6 cut(s) 373, 421, 570, 1095, 1173, 1312
SsiI CCGC 4 cut(s) 235, 258, 833, 967
SspI AATATT 1 cut(s) 742
SspMI CTAG 4 cut(s) 159, 521, 792, 956
StyD4I CCNGG 1 cut(s) 1335
StyI CCWWGG 1 cut(s) 846
SwaI ATTTAAAT 1 cut(s) 450
TaaI ACNGT 2 cut(s) 366, 533
TaiI ACGT 3 cut(s) 825, 886, 1023
TaqI TCGA 3 cut(s) 498, 961, 1224
TasI AATT 6 cut(s) 373, 421, 570, 1095, 1173, 1312
TatI WGTACW 1 cut(s) 50
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 5 cut(s) 104, 134, 402, 555, 1132
Tru1I TTAA 7 cut(s) 288, 431, 449, 480, 729, 815, 1424
Tru9I TTAA 7 cut(s) 288, 431, 449, 480, 729, 815, 1424
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 2 cut(s) 668, 857
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 9 cut(s) 17, 95, 400, 561, 591, 624, 708, 945, 1367
TspGWI ACGGA 1 cut(s) 1301
XapI RAATTY 1 cut(s) 1312
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 1 cut(s) 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 1111
XmnI GAANNNNTTC 2 cut(s) 8, 1028
XspI CTAG 4 cut(s) 159, 521, 792, 956
ZraI GACGTC 1 cut(s) 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.