Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005629

Physical Location & Seq

Genomic Coordinates Forward (+)

8465796 .. 8466863

Gene Structure 1068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0106000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGACCACCAACACCACCGAAAAAGAGTCGACTGCAACAAATCCCGACGATAACAATGATGAAGTCATCATCTGGGGTTTGGGCGGACTTGGAAATTATGAAGTGTCGAATGGTACGTTTAACCTTGTGTTCCTTTCAAATGGGAGGCTTGGGAATGAGTTATGTCTACACCGTTGGCTCGAAACTGCCATATATCTCTTGCATCTCTTGCCTCCGACTGGCCACCTGAGTGATAAGGTTGGTGACCTTGGAAGCCTCACTGTCATGCAAGATAGTGTACTTACAACTTGCGCGGAGGCCCAATACCAGAGAGAACCAGTGCACTTCGGCTCTGGTCAGGCAGTCAAAGCCCCTGTGCATCTGATTCGATTTCTCAGTTCTCCCGTGACAAATGCACATATGAAATTCAGCAATCCAAATCCCAAATTCTCTTCTGGTAAGGCATGGTATTCAATTTCTCACGTTGCTATTTCTTATGAGTTTTTCATGAAGCTTGGATGCCTTTTTAGTTTACTGATTTTATTCCCTCAGTTACACGCAGATCTGGCGAAGAAGAAGATGGCCTTAAAATCAGCATCTTATAATTACCTCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009987 GO:0010337 GO:0010565 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032350 GO:0035821 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044464 GO:0045088 GO:0045089 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0080142 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

198

Amino Acids

21.88

Weight (kDa)

6.7

Isoelectric Point (pI)

23.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09830 AT3G09830 AT3G09830 AT5G03320 AT5G03320
fragaria_vesca	FvH4_6g16160 FvH4_6g16160 FvH4_6g16160 FvH4_6g16160 FvH4_6g16160
malus_domestica	MD04G1095100.v1.1 MD12G1115300.v1.1
prunus_persica	Prupe.6G234400_v2.0.a1 Prupe.6G234400_v2.0.a1 Prupe.6G234400_v2.0.a1 Prupe.6G234400_v2.0.a1 Prupe.6G234400_v2.0.a1 Prupe.6G234400_v2.0.a1
pyrus_communis	pycom12g11460
rosa_chinensis	RchiOBHm_Chr3g0470001
rosa_laevigata	RLG00000024305
rosa_multiflora	Rmu_sc0007963.1_g000006
rosa_roxburghii	Rroxscaffold_6G00411300
rosa_rugosa	Rorug03G0105900 Rorug03G0106000
rosa_samantha	Rh3CG169800 Rh3DG196000
rosa_wichuraiana	Rw3G014610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AccI	GTMKAC	2 cut(s)	29, 166
AccII	CGCG	1 cut(s)	293
AciI	CCGC	2 cut(s)	84, 293
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	2 cut(s)	404, 425
AfaI	GTAC	2 cut(s)	115, 279
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	138, 453
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	2 cut(s)	493, 594
AluI	AGCT	2 cut(s)	493, 594
Alw21I	GWGCWC	1 cut(s)	324
Alw44I	GTGCAC	1 cut(s)	320
AoxI	GGCC	3 cut(s)	220, 297, 561
ApaLI	GTGCAC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	404, 425
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	590
BccI	CCATC	1 cut(s)	553
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BglII	AGATCT	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	298
BmsI	GCATC	4 cut(s)	211, 367, 488, 584
Bpu10I	CCTNAGC	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	223, 317
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	3 cut(s)	218, 388, 542
BseNI	ACTGG	2 cut(s)	223, 317
BseSI	GKGCMC	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	3 cut(s)	222, 299, 563
BsiHKAI	GWGCWC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	218
BsnI	GGCC	3 cut(s)	222, 299, 563
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	541
BspACI	CCGC	2 cut(s)	84, 293
BspANI	GGCC	3 cut(s)	222, 299, 563
BspCNI	CTCAG	3 cut(s)	219, 387, 541
BspFNI	CGCG	1 cut(s)	293
BspHI	TCATGA	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	223, 317
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	541
BssT1I	CCWWGG	1 cut(s)	247
Bst4CI	ACNGT	2 cut(s)	173, 262
Bst6I	CTCTTC	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstDEI	CTNAG	4 cut(s)	227, 374, 528, 590
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	503
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	1 cut(s)	544
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 347, 545
BstPI	GGTNACC	1 cut(s)	242
BstSLI	GKGCMC	1 cut(s)	324
BstUI	CGCG	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	3 cut(s)	222, 299, 563
BtsCI	GGATG	1 cut(s)	503
BtsIMutI	CAGTG	2 cut(s)	258, 324
CciI	TCATGA	1 cut(s)	486
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	114, 278
CviAII	CATG	3 cut(s)	265, 444, 487
CviQI	GTAC	2 cut(s)	114, 278
DdeI	CTNAG	4 cut(s)	227, 374, 528, 590
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
EciI	GGCGGA	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	247
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	3 cut(s)	268, 447, 490
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FatI	CATG	3 cut(s)	264, 443, 486
FauNDI	CATATG	1 cut(s)	399
FblI	GTMKAC	2 cut(s)	29, 166
FokI	GGATG	1 cut(s)	510
GlaI	GCGC	1 cut(s)	292
HaeIII	GGCC	3 cut(s)	222, 299, 563
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	3 cut(s)	268, 447, 490
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	2 cut(s)	26, 364
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	5 cut(s)	30, 167, 278, 322, 512
Hpy188I	TCNGA	2 cut(s)	216, 363
Hpy188III	TCNNGA	2 cut(s)	44, 487
Hpy8I	GTNNAC	5 cut(s)	30, 167, 278, 322, 512
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4III	ACNGT	2 cut(s)	173, 262
HpyCH4IV	ACGT	2 cut(s)	116, 462
HpyCH4V	TGCA	6 cut(s)	35, 202, 268, 322, 358, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 347, 545
HpyF3I	CTNAG	4 cut(s)	227, 374, 528, 590
HpySE526I	ACGT	2 cut(s)	116, 462
Hsp92II	CATG	3 cut(s)	268, 447, 490
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	541
LweI	GCATC	4 cut(s)	211, 367, 488, 584
MaeII	ACGT	2 cut(s)	116, 462
MaeIII	GTNAC	3 cut(s)	242, 385, 531
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	4 cut(s)	423, 562, 565, 568
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	5 cut(s)	94, 404, 425, 453, 583
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	5 cut(s)	138, 222, 266, 289, 537
Mox20I	TGGCCA	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	2 cut(s)	120, 566
MslI	CAYNNNNRTG	2 cut(s)	228, 263
Msp20I	TGGCCA	1 cut(s)	222
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	3 cut(s)	208, 347, 545
NdeI	CATATG	1 cut(s)	399
NdeII	GATC	1 cut(s)	541
NlaIII	CATG	3 cut(s)	268, 447, 490
NmuCI	GTSAC	2 cut(s)	242, 385
OliI	CACNNNNGTG	1 cut(s)	228
PagI	TCATGA	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	364
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PsiI	TTATAA	1 cut(s)	582
PspEI	GGTNACC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	541
RsaI	GTAC	2 cut(s)	115, 279
RsaNI	GTAC	2 cut(s)	114, 278
RseI	CAYNNNNRTG	2 cut(s)	228, 263
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	120, 566
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	9 cut(s)	119, 126, 228, 240, 249, 465, 495, 591, 596
SfaNI	GCATC	4 cut(s)	211, 367, 488, 584
SmiMI	CAYNNNNRTG	2 cut(s)	228, 263
Sse9I	AATT	5 cut(s)	94, 404, 425, 453, 583
SsiI	CCGC	2 cut(s)	84, 293
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	173, 262
TaiI	ACGT	2 cut(s)	119, 465
TaqI	TCGA	4 cut(s)	29, 107, 180, 367
TasI	AATT	5 cut(s)	94, 404, 425, 453, 583
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	120, 566
Tru9I	TTAA	2 cut(s)	120, 566
TscAI	CASTG	2 cut(s)	265, 324
TseFI	GTSAC	2 cut(s)	242, 385
Tsp45I	GTSAC	2 cut(s)	242, 385
TspDTI	ATGAA	5 cut(s)	75, 114, 416, 475, 503
TspRI	CASTG	2 cut(s)	265, 324
VneI	GTGCAC	1 cut(s)	320
XapI	RAATTY	2 cut(s)	404, 425
XmiI	GTMKAC	2 cut(s)	29, 166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.