MD12G1115300.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
18375901 .. 18380535
4635 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1115300.v1.1.491

Sequence Viewer

Length: 1371 bp
ATGAAGTGCTTCCCATTTTACATTGGAGAGAAAAAGGACGAACCAAAGAGCACAAATACAACTTTTACCGATGGTGAAATGAAGAGATCTGGATCAGAGTTAGATTCCCAGAATATCTCTGATGCGAGCACAGAATCCCTGAGGAGGAACCAATATCCTAGTTTCTCTCAGAGACCCAGCAACCTCAAAGTATTTTCAGTTTCAGAGCTGAAGTCTGCCACGAAGAACTTCAGCCGCTCTGTCATGGTTGGAGAGGGTGGGTTTGGGTGTGTCTATAAGGGGCTGATTAAAAGCGAAGAAGATCCAAATAAAAAACTTGAAGTTGCCGTGAAACAGCTCAGTAAAAGAGGCTTGCAGGGGCACAAGGAATGGGTGACAGAAGTTAATGTTCTTGGGGTGGTTGAGCATCCAAACCTAGTCAAACTAGTGGGCTACTGTGCTGAGGATGATGAACGAGGAATCCAACGACTTCTAATTTATGAATACATGCCTAATGGAAGTGTAGAGAACCATTTAGCCAATCGTGTAGATCCTCTTTCATGGGCCATGAGATTGAGAATAGCACAAGATGCTGCTCGTGGCTTGACATACTTACATGAAGAAATGGACTTTCAGATCATTTTCAGGGATTTTAAATCTTCAAATATTCTTCTGGATGATCAATGGAATGCGAAGCTGTCAGACTTTGGAATGGCTAGGTTGGGCCCATCGGAAGGATTAACCCACGTCTCAACAGCTGTTGTTGGAACCATGGGATACGCAGCACCTGAGTACATCCAGACTGGACGTCTAACATCTAAGAATGATGTGTGGAGCTATGGGGTCTTCCTTTATGAACTCATCACAGGTAGGCGTCCTCTAGATCGAAACCGCCCTAAGAGTGAGCAGAATCTCTTGGATTGGGTAAAGCCATACCTGTCAGATGTGAAGAAGTTCCGGCTAATAATAGACCCCAAGCTTGAAGGTAAATACCCCCTCAAGTCAGCTCAAAAGCTTGCAATTGTAGCCAACAGATGCTTGGTCAAACTCCCGAAGAATCGTCCAAAGATGAGCGAGGTATTGGAAATGGTAAATCAAATTATAGAGGCTTCATCTGGCCAGAAGAAAAATACCAACATACAATCAGGCCAAAAGAAAACTATGGAGGTACCCTTAGTTGGAAAGAAAAAAAGGGAGGCACAATCAAGCCAAAATAAAGTTATGGAGACACGAAGAGGAACAGAAAGTATGCAACTGCCCCCGAAGAATTTGGCACCAATAGAAACTTCCAGGGATGTTGAAACAGTGAACAAGAAGAGAAATGTAGATTTGAGGAGGAAGGAAACTGGCTGGTTCTCTCGCTCGTGGACACCAAAACTTTCAAGGACGTGA

Protein Analysis

457

Amino Acids

51.84

Weight (kDa)

9.55

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 80 - 355 4.7e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 82 - 355 2.5e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 790
Acc65I GGTACC 1 cut(s) 1147
AccB1I GGYRCC 2 cut(s) 1147, 1252
AccBSI CCGCTC 1 cut(s) 237
AciI CCGC 2 cut(s) 235, 871
AclWI GGATC 3 cut(s) 100, 296, 524
AcoI YGGCCR 1 cut(s) 1096
AcsI RAATTY 1 cut(s) 1246
AcuI CTGAAG 2 cut(s) 214, 230
AcyI GRCGYC 2 cut(s) 787, 853
AfaI GTAC 2 cut(s) 773, 1149
AfiI CCNNNNNNNGG 3 cut(s) 144, 713, 1157
AgsI TTSAA 5 cut(s) 320, 642, 962, 1280, 1362
AhdI GACNNNNNGTC 1 cut(s) 786
AhlI ACTAGT 1 cut(s) 424
AjiI CACGTC 2 cut(s) 727, 1368
AjnI CCWGG 1 cut(s) 1268
AjuI GAANNNNNNNTTGG 2 cut(s) 1249, 1281
AloI GAACNNNNNNTCC 2 cut(s) 444, 476
AluBI AGCT 8 cut(s) 208, 337, 676, 737, 816, 958, 986, 994
AluI AGCT 8 cut(s) 208, 337, 676, 737, 816, 958, 986, 994
Alw21I GWGCWC 2 cut(s) 53, 131
Alw26I GTCTC 3 cut(s) 166, 733, 1199
AlwI GGATC 3 cut(s) 100, 296, 524
AlwNI CAGNNNCTG 1 cut(s) 767
AoxI GGCC 4 cut(s) 543, 703, 1096, 1126
ApaI GGGCCC 1 cut(s) 707
ApeKI GCWGC 2 cut(s) 572, 761
ApoI RAATTY 1 cut(s) 1246
Asp700I GAANNNNTTC 3 cut(s) 8, 227, 932
Asp718I GGTACC 1 cut(s) 1147
AspS9I GGNCC 3 cut(s) 543, 703, 704
AsuHPI GGTGA 2 cut(s) 86, 385
AxyI CCTNAGG 1 cut(s) 140
BaeGI GKGCMC 2 cut(s) 363, 707
BalI TGGCCA 1 cut(s) 1098
BanI GGYRCC 2 cut(s) 1147, 1252
BanII GRGCYC 1 cut(s) 707
BauI CACGAG 2 cut(s) 576, 1342
BbsI GAAGAC 1 cut(s) 817
Bbv12I GWGCWC 2 cut(s) 53, 131
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 559, 773
BccI CCATC 2 cut(s) 65, 715
BceAI ACGGC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 1270
BciVI GTATCC 1 cut(s) 749
BclI TGATCA 1 cut(s) 658
BcoDI GTCTC 3 cut(s) 166, 733, 1199
BcuI ACTAGT 1 cut(s) 424
BfaI CTAG 5 cut(s) 159, 416, 425, 696, 860
BfuI GTATCC 1 cut(s) 749
BglII AGATCT 1 cut(s) 86
BisI GCNGC 3 cut(s) 235, 573, 762
BlsI GCNGC 3 cut(s) 236, 574, 763
Bme1390I CCNGG 1 cut(s) 1270
BmeRI GACNNNNNGTC 1 cut(s) 786
BmgBI CACGTC 2 cut(s) 727, 1368
BmgT120I GGNCC 3 cut(s) 543, 703, 704
BmiI GGNNCC 5 cut(s) 149, 705, 748, 1149, 1254
BmrFI CCNGG 1 cut(s) 1270
BmsI GCATC 4 cut(s) 112, 415, 559, 1004
BpiI GAAGAC 1 cut(s) 817
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 962
BsaBI GATNNNNATC 1 cut(s) 91
BsaHI GRCGYC 2 cut(s) 787, 853
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 750, 1269
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 713, 1157
Bse1I ACTGG 2 cut(s) 787, 1330
Bse21I CCTNAGG 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 91
BseBI CCWGG 1 cut(s) 1270
BseDI CCNNGG 2 cut(s) 750, 1269
BseGI GGATG 5 cut(s) 406, 451, 661, 774, 1279
BseJI GATNNNNATC 1 cut(s) 91
BseLI CCNNNNNNNGG 3 cut(s) 144, 713, 1157
BseMII CTCAG 5 cut(s) 131, 182, 352, 432, 759
BseNI ACTGG 2 cut(s) 787, 1330
BseRI GAGGAG 2 cut(s) 157, 1327
BseSI GKGCMC 2 cut(s) 363, 707
BseXI GCAGC 2 cut(s) 559, 773
BseYI CCCAGC 1 cut(s) 176
BshFI GGCC 4 cut(s) 545, 705, 1098, 1128
BshNI GGYRCC 2 cut(s) 1147, 1252
BsiHKAI GWGCWC 2 cut(s) 53, 131
BsiSI CCGG 1 cut(s) 937
BslI CCNNNNNNNGG 3 cut(s) 144, 713, 1157
BsmAI GTCTC 3 cut(s) 166, 733, 1199
BsmBI CGTCTC 1 cut(s) 733
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 4 cut(s) 545, 705, 1098, 1128
Bso31I GGTCTC 1 cut(s) 166
Bsp120I GGGCCC 1 cut(s) 703
Bsp1286I GDGCHC 4 cut(s) 53, 131, 363, 707
Bsp143I GATC 7 cut(s) 86, 92, 301, 529, 615, 658, 862
Bsp19I CCATGG 1 cut(s) 750
BspACI CCGC 2 cut(s) 235, 871
BspANI GGCC 4 cut(s) 545, 705, 1098, 1128
BspCNI CTCAG 5 cut(s) 132, 181, 351, 433, 760
BspLI GGNNCC 5 cut(s) 149, 705, 748, 1149, 1254
BspPI GGATC 3 cut(s) 100, 296, 524
BspT107I GGYRCC 2 cut(s) 1147, 1252
BspTNI GGTCTC 1 cut(s) 166
BsrBI CCGCTC 1 cut(s) 237
BsrI ACTGG 2 cut(s) 787, 1330
BssECI CCNNGG 2 cut(s) 750, 1269
BssMI GATC 7 cut(s) 86, 92, 301, 529, 615, 658, 862
BssNI GRCGYC 2 cut(s) 787, 853
BssSI CACGAG 2 cut(s) 576, 1342
BssT1I CCWWGG 1 cut(s) 750
Bst2BI CACGAG 2 cut(s) 576, 1342
Bst2UI CCWGG 1 cut(s) 1270
Bst4CI ACNGT 2 cut(s) 437, 1285
Bst6I CTCTTC 3 cut(s) 77, 1207, 1289
BstACI GRCGYC 2 cut(s) 787, 853
BstAPI GCANNNNNTGC 1 cut(s) 569
BstC8I GCNNGC 3 cut(s) 127, 353, 996
BstDEI CTNAG 8 cut(s) 140, 168, 338, 441, 768, 798, 876, 1153
BstDSI CCRYGG 1 cut(s) 750
BstF5I GGATG 5 cut(s) 406, 451, 661, 774, 1279
BstKTI GATC 7 cut(s) 89, 95, 304, 532, 618, 661, 865
BstMAI GTCTC 3 cut(s) 166, 733, 1199
BstMBI GATC 7 cut(s) 86, 92, 301, 529, 615, 658, 862
BstMWI GCNNNNNNNGC 2 cut(s) 569, 1004
BstNI CCWGG 1 cut(s) 1270
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 1268
BstSLI GKGCMC 2 cut(s) 363, 707
BstV1I GCAGC 2 cut(s) 559, 773
BstV2I GAAGAC 1 cut(s) 817
BstX2I RGATCY 3 cut(s) 86, 301, 529
BstYI RGATCY 3 cut(s) 86, 301, 529
Bsu36I CCTNAGG 1 cut(s) 140
BsuI GTATCC 1 cut(s) 749
BsuRI GGCC 4 cut(s) 545, 705, 1098, 1128
BtgI CCRYGG 1 cut(s) 750
BtrI CACGTC 2 cut(s) 727, 1368
BtsCI GGATG 5 cut(s) 406, 451, 661, 774, 1279
BtsIMutI CAGTG 1 cut(s) 1290
Cac8I GCNNGC 3 cut(s) 127, 353, 996
CaiI CAGNNNCTG 1 cut(s) 767
Cfr13I GGNCC 3 cut(s) 543, 703, 704
CseI GACGC 1 cut(s) 842
Csp6I GTAC 2 cut(s) 772, 1148
CviAII CATG 6 cut(s) 244, 487, 540, 547, 596, 751
CviQI GTAC 2 cut(s) 772, 1148
DdeI CTNAG 8 cut(s) 140, 168, 338, 441, 768, 798, 876, 1153
DpnI GATC 7 cut(s) 88, 94, 303, 531, 617, 660, 864
DpnII GATC 7 cut(s) 86, 92, 301, 529, 615, 658, 862
DraI TTTAAA 1 cut(s) 634
DriI GACNNNNNGTC 1 cut(s) 786
EaeI YGGCCR 1 cut(s) 1096
Eam1104I CTCTTC 3 cut(s) 77, 1207, 1289
Eam1105I GACNNNNNGTC 1 cut(s) 786
EarI CTCTTC 3 cut(s) 77, 1207, 1289
Eco130I CCWWGG 1 cut(s) 750
Eco24I GRGCYC 1 cut(s) 707
Eco31I GGTCTC 1 cut(s) 166
Eco57I CTGAAG 2 cut(s) 214, 230
Eco81I CCTNAGG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 1268
EcoT14I CCWWGG 1 cut(s) 750
EcoT38I GRGCYC 1 cut(s) 707
ErhI CCWWGG 1 cut(s) 750
Esp3I CGTCTC 1 cut(s) 733
FaeI CATG 6 cut(s) 247, 490, 543, 550, 599, 754
FatI CATG 6 cut(s) 243, 486, 539, 546, 595, 750
FbaI TGATCA 1 cut(s) 658
Fnu4HI GCNGC 3 cut(s) 235, 573, 762
FokI GGATG 5 cut(s) 393, 458, 668, 761, 1286
FriOI GRGCYC 1 cut(s) 707
Fsp4HI GCNGC 3 cut(s) 235, 573, 762
FspBI CTAG 5 cut(s) 159, 416, 425, 696, 860
GluI GCNGC 3 cut(s) 235, 573, 762
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 4 cut(s) 545, 705, 1098, 1128
HapII CCGG 1 cut(s) 937
HgaI GACGC 1 cut(s) 842
Hin1I GRCGYC 2 cut(s) 787, 853
Hin1II CATG 6 cut(s) 247, 490, 543, 550, 599, 754
HindIII AAGCTT 2 cut(s) 956, 992
HinfI GANTC 5 cut(s) 104, 134, 459, 889, 1036
HpaII CCGG 1 cut(s) 937
HphI GGTGA 2 cut(s) 86, 385
Hpy166II GTNNAC 2 cut(s) 1288, 1347
Hpy188I TCNGA 8 cut(s) 97, 121, 171, 205, 615, 682, 712, 922
Hpy188III TCNNGA 5 cut(s) 90, 653, 778, 860, 1030
Hpy8I GTNNAC 2 cut(s) 1288, 1347
HpyAV CCTTC 3 cut(s) 707, 956, 1312
HpyCH4III ACNGT 2 cut(s) 437, 1285
HpyCH4IV ACGT 3 cut(s) 726, 787, 1367
HpyCH4V TGCA 3 cut(s) 355, 998, 1231
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 1004
HpyF3I CTNAG 8 cut(s) 140, 168, 338, 441, 768, 798, 876, 1153
HpySE526I ACGT 3 cut(s) 726, 787, 1367
Hsp92I GRCGYC 2 cut(s) 787, 853
Hsp92II CATG 6 cut(s) 247, 490, 543, 550, 599, 754
KpnI GGTACC 1 cut(s) 1151
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 7 cut(s) 86, 92, 301, 529, 615, 658, 862
LmnI GCTCC 1 cut(s) 813
Lsp1109I GCAGC 2 cut(s) 559, 773
LweI GCATC 4 cut(s) 112, 415, 559, 1004
MaeI CTAG 5 cut(s) 159, 416, 425, 696, 860
MaeII ACGT 3 cut(s) 726, 787, 1367
MaeIII GTNAC 1 cut(s) 373
MalI GATC 7 cut(s) 88, 94, 303, 531, 617, 660, 864
MbiI CCGCTC 1 cut(s) 237
MboI GATC 7 cut(s) 86, 92, 301, 529, 615, 658, 862
MfeI CAATTG 1 cut(s) 999
MflI RGATCY 3 cut(s) 86, 301, 529
MhlI GDGCHC 4 cut(s) 53, 131, 363, 707
MlsI TGGCCA 1 cut(s) 1098
MluCI AATT 4 cut(s) 474, 999, 1077, 1246
MluNI TGGCCA 1 cut(s) 1098
MmeI TCCRAC 4 cut(s) 229, 487, 724, 1138
Mox20I TGGCCA 1 cut(s) 1098
MroXI GAANNNNTTC 3 cut(s) 8, 227, 932
MscI TGGCCA 1 cut(s) 1098
MseI TTAA 4 cut(s) 288, 384, 633, 719
Msp20I TGGCCA 1 cut(s) 1098
MspA1I CMGCKG 1 cut(s) 737
MspI CCGG 1 cut(s) 937
MspR9I CCNGG 1 cut(s) 1270
MunI CAATTG 1 cut(s) 999
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 1 cut(s) 1270
MwoI GCNNNNNNNGC 2 cut(s) 569, 1004
NcoI CCATGG 1 cut(s) 750
NdeII GATC 7 cut(s) 86, 92, 301, 529, 615, 658, 862
NlaIII CATG 6 cut(s) 247, 490, 543, 550, 599, 754
NlaIV GGNNCC 5 cut(s) 149, 705, 748, 1149, 1254
NmuCI GTSAC 1 cut(s) 373
NspI RCATGY 1 cut(s) 490
PctI GAATGC 1 cut(s) 673
PdmI GAANNNNTTC 3 cut(s) 8, 227, 932
PfeI GAWTC 5 cut(s) 104, 134, 459, 889, 1036
PkrI GCNGC 3 cut(s) 236, 574, 763
Psp6I CCWGG 1 cut(s) 1268
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 1 cut(s) 1268
PspN4I GGNNCC 5 cut(s) 149, 705, 748, 1149, 1254
PspOMI GGGCCC 1 cut(s) 703
PspPI GGNCC 3 cut(s) 543, 703, 704
PstNI CAGNNNCTG 1 cut(s) 767
PsuI RGATCY 3 cut(s) 86, 301, 529
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 2 cut(s) 773, 1149
RsaNI GTAC 2 cut(s) 772, 1148
SaqAI TTAA 4 cut(s) 288, 384, 633, 719
SatI GCNGC 3 cut(s) 235, 573, 762
Sau3AI GATC 7 cut(s) 86, 92, 301, 529, 615, 658, 862
Sau96I GGNCC 3 cut(s) 543, 703, 704
ScrFI CCNGG 1 cut(s) 1270
SduI GDGCHC 4 cut(s) 53, 131, 363, 707
SfaNI GCATC 4 cut(s) 112, 415, 559, 1004
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
SpeI ACTAGT 1 cut(s) 424
Sse9I AATT 4 cut(s) 474, 999, 1077, 1246
SsiI CCGC 2 cut(s) 235, 871
SspI AATATT 1 cut(s) 646
SspMI CTAG 5 cut(s) 159, 416, 425, 696, 860
StyD4I CCNGG 1 cut(s) 1268
StyI CCWWGG 1 cut(s) 750
TaaI ACNGT 2 cut(s) 437, 1285
TaiI ACGT 3 cut(s) 729, 790, 1370
TaqI TCGA 1 cut(s) 865
TasI AATT 4 cut(s) 474, 999, 1077, 1246
TatI WGTACW 1 cut(s) 771
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 5 cut(s) 104, 134, 459, 889, 1036
Tru1I TTAA 4 cut(s) 288, 384, 633, 719
Tru9I TTAA 4 cut(s) 288, 384, 633, 719
TscAI CASTG 1 cut(s) 1290
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 2 cut(s) 572, 761
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 8 cut(s) 17, 95, 465, 495, 528, 612, 849, 1080
TspRI CASTG 1 cut(s) 1290
XapI RAATTY 1 cut(s) 1246
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 1 cut(s) 490
XcmI CCANNNNNNNNNTGG 1 cut(s) 1015
XmnI GAANNNNTTC 3 cut(s) 8, 227, 932
XspI CTAG 5 cut(s) 159, 416, 425, 696, 860
ZraI GACGTC 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.