Rw3G014610

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
14846759 .. 14850877
4119 bp
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UTR
Exon/CDS
Intron
Rw3G014610.1

Sequence Viewer

Length: 1413 bp
ATGCAAAGAACAGAATATGCACTGCTAAATTCTACGAGGATTATGTGTTGTACACTGTTGGGAGCTATGAAGTGCTTCTCCTTCTATCTTGGAGACAAAAAGGATGAACCAAAAAGCCCAAATATAACATTTACCGATGGTGAAATGAAGAGATCTGGATCTGAGTTGGATTCCCAGAATATCTCTGACGCCAGTTCAGAGTCCTTGAGGAGGAACCAATATCCTAGTTTCTCTCAGAGGCCCAGCAACCTCAGAATATTCACAGTTTCTGAGCTGAAGGCAGCCACTAAGAATTTCGGCCGATCTGGCATGGTTGGAGAGGGTGGGTTTGGGTGTGTCTATAAAGGGCAGATTAAGAGTTTAGAAGATCCATCCCAAAAACTTGAAGTTGCCGTGAAACAGCTCAGTAAAAGAGGGTTGCAGGGGCACAAGGAATGGGTGACAGAAGTTAATGTTCTCGGTGTGGTTGAGCATCCAAACCTTGTCAAACTAGTGGGCTACTGTGCTGAGGATGATGAAAGAGGAATCCAGAGACTTCTTATTTATGAATATATGCCTAATGGAAGTGTAGAGAACCATTTATCAAATCGTTCAGATACACCTCTTTCATGGGCTATGCGATTGAAAATAGCACAAGATGCTGCTCGTGGCTTAGCATACCTACATGAAGAAATGGATTTTCAGATCATTTTCAGGGATTTCAAATCTTCAAATATCCTGTTGGATGAGGAGTGGAACGCAAAGCTATCAGATTTTGGAATGGCTAGGTTGGGTCCAGCAGAAGGATTAAGCCACGTCTCAACAGCGGTTGTTGGAACCATGGGTTATGCAGCACCTGAGTATATCCAGACTGGACGTCTAACATCTAAAAATGATGTGTGGAGCTATGGGGTCTTTCTCTATGAGCTTATTACAGGTAGGCGTCCTCTGGATCGAAACCGGCCCAAGAGTGAGCAGAAACTCTTAGAATGGGTAAAGCCATACCTGTCAGACTTGAAGAAGTTCAGGTTAATAATAGACCCTAGGCTTGAAGGTAAGTACCCCCTCAAGTCAGTTCAAAAGCTTGCAATTGTAGCCAACAGATGTTTGGTCAGACTCCCCAAGAACCGTCCAAAGATGAGTGAGGTTTTGGAAATGGTAAATCAGATTATAGAGGCACCATCAGGCCAGAAAAAAACCAGGGAGGCACCATCGGGCCAAATCAAATTCAAGGAGGCACCATCTGGCCAAAATAAGATCATGGAGGCACCAACAGGAACAGCAAGTCTGCCACTACCACCGGTCAATTTGGCACCAATAGAAACTTCCAGGGACCATGAAACAGTGGGCAAGAAAAGAAATGTGGAAATGAGAAGGGGAGAAACTGGTTGGTTATCTCGTATGTGGACACCAAAGCTTTTAAGGACATGCTGA

Protein Analysis

470

Amino Acids

53.02

Weight (kDa)

9.3

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 103 - 378 3.4e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 104 - 378 2.3e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 859
AccB1I GGYRCC 5 cut(s) 1156, 1186, 1216, 1246, 1291
AciI CCGC 1 cut(s) 806
AclWI GGATC 3 cut(s) 166, 362, 939
AcoI YGGCCR 2 cut(s) 298, 1225
AcsI RAATTY 3 cut(s) 28, 292, 1205
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 3 cut(s) 189, 856, 922
AfaI GTAC 2 cut(s) 52, 1040
AfiI CCNNNNNNNGG 2 cut(s) 210, 782
AgeI ACCGGT 1 cut(s) 1279
AgsI TTSAA 8 cut(s) 386, 625, 703, 711, 997, 1031, 1058, 1210
AhdI GACNNNNNGTC 1 cut(s) 855
AhlI ACTAGT 1 cut(s) 490
AjiI CACGTC 1 cut(s) 796
AjnI CCWGG 2 cut(s) 1178, 1307
AjuI GAANNNNNNNTTGG 2 cut(s) 1288, 1320
AluBI AGCT 8 cut(s) 65, 274, 403, 745, 885, 907, 1063, 1396
AluI AGCT 8 cut(s) 65, 274, 403, 745, 885, 907, 1063, 1396
Alw26I GTCTC 3 cut(s) 87, 526, 802
AlwI GGATC 3 cut(s) 166, 362, 939
AlwNI CAGNNNCTG 2 cut(s) 269, 836
AoxI GGCC 6 cut(s) 239, 298, 941, 1165, 1195, 1225
ApeKI GCWGC 3 cut(s) 281, 641, 830
ApoI RAATTY 3 cut(s) 28, 292, 1205
AsiGI ACCGGT 1 cut(s) 1279
Asp700I GAANNNNTTC 2 cut(s) 74, 1001
AspA2I CCTAGG 1 cut(s) 1022
AspS9I GGNCC 5 cut(s) 240, 773, 942, 1195, 1312
AsuHPI GGTGA 2 cut(s) 152, 451
AvaII GGWCC 2 cut(s) 773, 1312
AvrII CCTAGG 1 cut(s) 1022
BaeGI GKGCMC 1 cut(s) 429
BalI TGGCCA 1 cut(s) 1227
BanI GGYRCC 5 cut(s) 1156, 1186, 1216, 1246, 1291
BauI CACGAG 1 cut(s) 645
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 3 cut(s) 293, 628, 842
BccI CCATC 5 cut(s) 131, 379, 1168, 1198, 1228
BceAI ACGGC 1 cut(s) 377
BciT130I CCWGG 2 cut(s) 1180, 1309
BcoDI GTCTC 3 cut(s) 87, 526, 802
BcuI ACTAGT 1 cut(s) 490
BfaI CTAG 4 cut(s) 225, 491, 765, 1023
BglI GCCNNNNNGGC 1 cut(s) 306
BglII AGATCT 1 cut(s) 152
BisI GCNGC 3 cut(s) 282, 642, 831
BlnI CCTAGG 1 cut(s) 1022
BlpI GCTNAGC 1 cut(s) 652
BlsI GCNGC 3 cut(s) 283, 643, 832
Bme1390I CCNGG 2 cut(s) 1180, 1309
Bme18I GGWCC 2 cut(s) 773, 1312
BmeRI GACNNNNNGTC 1 cut(s) 855
BmgBI CACGTC 1 cut(s) 796
BmgT120I GGNCC 5 cut(s) 240, 773, 942, 1195, 1312
BmiI GGNNCC 9 cut(s) 215, 774, 817, 1158, 1188, 1218, 1248, 1293, 1313
BmrFI CCNGG 2 cut(s) 1180, 1309
BmsI GCATC 2 cut(s) 481, 628
Bpu10I CCTNAGC 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 652
BpuEI CTTGAG 2 cut(s) 226, 1031
BsaBI GATNNNNATC 1 cut(s) 157
BsaHI GRCGYC 3 cut(s) 189, 856, 922
BsaJI CCNNGG 4 cut(s) 819, 1022, 1179, 1308
BsaWI WCCGGW 1 cut(s) 1279
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 782
Bse118I RCCGGY 2 cut(s) 939, 1279
Bse1I ACTGG 3 cut(s) 192, 856, 1369
Bse8I GATNNNNATC 1 cut(s) 157
BseBI CCWGG 2 cut(s) 1180, 1309
BseDI CCNNGG 4 cut(s) 819, 1022, 1179, 1308
BseGI GGATG 5 cut(s) 109, 371, 472, 517, 730
BseJI GATNNNNATC 1 cut(s) 157
BseLI CCNNNNNNNGG 2 cut(s) 210, 782
BseMII CTCAG 7 cut(s) 153, 248, 261, 265, 418, 498, 828
BseNI ACTGG 3 cut(s) 192, 856, 1369
BseRI GAGGAG 2 cut(s) 223, 743
BseSI GKGCMC 1 cut(s) 429
BseX3I CGGCCG 1 cut(s) 298
BseXI GCAGC 3 cut(s) 293, 628, 842
BseYI CCCAGC 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 6 cut(s) 241, 300, 943, 1167, 1197, 1227
BshNI GGYRCC 5 cut(s) 1156, 1186, 1216, 1246, 1291
BshTI ACCGGT 1 cut(s) 1279
BsiEI CGRYCG 1 cut(s) 301
BsiSI CCGG 2 cut(s) 940, 1280
BslFI GGGAC 1 cut(s) 1325
BslI CCNNNNNNNGG 2 cut(s) 210, 782
BsmAI GTCTC 3 cut(s) 87, 526, 802
BsmBI CGTCTC 1 cut(s) 802
BsmFI GGGAC 1 cut(s) 1325
BsnI GGCC 6 cut(s) 241, 300, 943, 1167, 1197, 1227
Bsp1286I GDGCHC 1 cut(s) 429
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 7 cut(s) 152, 158, 302, 367, 684, 931, 1236
Bsp1720I GCTNAGC 1 cut(s) 652
Bsp19I CCATGG 1 cut(s) 819
BspACI CCGC 1 cut(s) 806
BspANI GGCC 6 cut(s) 241, 300, 943, 1167, 1197, 1227
BspCNI CTCAG 7 cut(s) 154, 247, 262, 264, 417, 499, 829
BspLI GGNNCC 9 cut(s) 215, 774, 817, 1158, 1188, 1218, 1248, 1293, 1313
BspPI GGATC 3 cut(s) 166, 362, 939
BspT107I GGYRCC 5 cut(s) 1156, 1186, 1216, 1246, 1291
BsrFI RCCGGY 2 cut(s) 939, 1279
BsrGI TGTACA 1 cut(s) 50
BsrI ACTGG 3 cut(s) 192, 856, 1369
BssAI RCCGGY 2 cut(s) 939, 1279
BssECI CCNNGG 4 cut(s) 819, 1022, 1179, 1308
BssMI GATC 7 cut(s) 152, 158, 302, 367, 684, 931, 1236
BssNI GRCGYC 3 cut(s) 189, 856, 922
BssSI CACGAG 1 cut(s) 645
BssT1I CCWWGG 2 cut(s) 819, 1022
Bst2BI CACGAG 1 cut(s) 645
Bst2UI CCWGG 2 cut(s) 1180, 1309
Bst4CI ACNGT 5 cut(s) 57, 265, 503, 1109, 1324
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 3 cut(s) 189, 856, 922
BstAPI GCANNNNNTGC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 1065
BstDSI CCRYGG 1 cut(s) 819
BstENI CCTNNNNNAGG 1 cut(s) 208
BstF5I GGATG 5 cut(s) 109, 371, 472, 517, 730
BstKTI GATC 7 cut(s) 155, 161, 305, 370, 687, 934, 1239
BstMAI GTCTC 3 cut(s) 87, 526, 802
BstMBI GATC 7 cut(s) 152, 158, 302, 367, 684, 931, 1236
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 306, 638, 1073
BstNI CCWGG 2 cut(s) 1180, 1309
BstNSI RCATGY 1 cut(s) 1410
BstSCI CCNGG 2 cut(s) 1178, 1307
BstSLI GKGCMC 1 cut(s) 429
BstV1I GCAGC 3 cut(s) 293, 628, 842
BstX2I RGATCY 3 cut(s) 152, 158, 367
BstYI RGATCY 3 cut(s) 152, 158, 367
BstZI CGGCCG 1 cut(s) 298
BsuRI GGCC 6 cut(s) 241, 300, 943, 1167, 1197, 1227
BtgI CCRYGG 1 cut(s) 819
BtrI CACGTC 1 cut(s) 796
BtsCI GGATG 5 cut(s) 109, 371, 472, 517, 730
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 3 cut(s) 20, 53, 1329
Cac8I GCNNGC 1 cut(s) 1065
CaiI CAGNNNCTG 2 cut(s) 269, 836
Cfr10I RCCGGY 2 cut(s) 939, 1279
Cfr13I GGNCC 5 cut(s) 240, 773, 942, 1195, 1312
CseI GACGC 2 cut(s) 197, 911
Csp6I GTAC 2 cut(s) 51, 1039
CspAI ACCGGT 1 cut(s) 1279
CviAII CATG 7 cut(s) 310, 609, 665, 820, 1240, 1316, 1407
CviQI GTAC 2 cut(s) 51, 1039
DpnI GATC 7 cut(s) 154, 160, 304, 369, 686, 933, 1238
DpnII GATC 7 cut(s) 152, 158, 302, 367, 684, 931, 1236
DriI GACNNNNNGTC 1 cut(s) 855
EaeI YGGCCR 2 cut(s) 298, 1225
EagI CGGCCG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 143
Eam1105I GACNNNNNGTC 1 cut(s) 855
EarI CTCTTC 1 cut(s) 143
EclXI CGGCCG 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 819, 1022
Eco47I GGWCC 2 cut(s) 773, 1312
Eco52I CGGCCG 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 296
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 1178, 1307
EcoT14I CCWWGG 2 cut(s) 819, 1022
ErhI CCWWGG 2 cut(s) 819, 1022
Esp3I CGTCTC 1 cut(s) 802
FaeI CATG 7 cut(s) 313, 612, 668, 823, 1243, 1319, 1410
FaqI GGGAC 1 cut(s) 1325
FatI CATG 7 cut(s) 309, 608, 664, 819, 1239, 1315, 1406
Fnu4HI GCNGC 3 cut(s) 282, 642, 831
FokI GGATG 5 cut(s) 116, 358, 459, 524, 737
Fsp4HI GCNGC 3 cut(s) 282, 642, 831
FspBI CTAG 4 cut(s) 225, 491, 765, 1023
GluI GCNGC 3 cut(s) 282, 642, 831
GsaI CCCAGC 1 cut(s) 246
HaeIII GGCC 6 cut(s) 241, 300, 943, 1167, 1197, 1227
HapII CCGG 2 cut(s) 940, 1280
HgaI GACGC 2 cut(s) 197, 911
Hin1I GRCGYC 3 cut(s) 189, 856, 922
Hin1II CATG 7 cut(s) 313, 612, 668, 823, 1243, 1319, 1410
HindIII AAGCTT 2 cut(s) 1061, 1394
HinfI GANTC 4 cut(s) 170, 200, 525, 1095
HpaII CCGG 2 cut(s) 940, 1280
HphI GGTGA 2 cut(s) 152, 451
Hpy166II GTNNAC 2 cut(s) 53, 1386
Hpy188III TCNNGA 4 cut(s) 156, 529, 847, 929
Hpy8I GTNNAC 2 cut(s) 53, 1386
HpyAV CCTTC 5 cut(s) 91, 271, 776, 1025, 1347
HpyCH4III ACNGT 5 cut(s) 57, 265, 503, 1109, 1324
HpyCH4IV ACGT 2 cut(s) 795, 856
HpyCH4V TGCA 5 cut(s) 4, 20, 421, 830, 1067
HpyF10VI GCNNNNNNNGC 3 cut(s) 306, 638, 1073
HpySE526I ACGT 2 cut(s) 795, 856
Hsp92I GRCGYC 3 cut(s) 189, 856, 922
Hsp92II CATG 7 cut(s) 313, 612, 668, 823, 1243, 1319, 1410
Kzo9I GATC 7 cut(s) 152, 158, 302, 367, 684, 931, 1236
LmnI GCTCC 2 cut(s) 62, 882
Lsp1109I GCAGC 3 cut(s) 293, 628, 842
LweI GCATC 2 cut(s) 481, 628
MaeI CTAG 4 cut(s) 225, 491, 765, 1023
MaeII ACGT 2 cut(s) 795, 856
MaeIII GTNAC 1 cut(s) 439
MalI GATC 7 cut(s) 154, 160, 304, 369, 686, 933, 1238
MboI GATC 7 cut(s) 152, 158, 302, 367, 684, 931, 1236
MboII GAAGA 5 cut(s) 160, 377, 680, 699, 1009
MfeI CAATTG 1 cut(s) 1068
MflI RGATCY 3 cut(s) 152, 158, 367
MhlI GDGCHC 1 cut(s) 429
MlsI TGGCCA 1 cut(s) 1227
MluCI AATT 5 cut(s) 28, 292, 1068, 1205, 1285
MluNI TGGCCA 1 cut(s) 1227
MlyI GAGTC 2 cut(s) 209, 1089
MmeI TCCRAC 4 cut(s) 147, 295, 702, 793
Mox20I TGGCCA 1 cut(s) 1227
MroXI GAANNNNTTC 2 cut(s) 74, 1001
MscI TGGCCA 1 cut(s) 1227
MseI TTAA 5 cut(s) 354, 450, 788, 1010, 1400
Msp20I TGGCCA 1 cut(s) 1227
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 2 cut(s) 940, 1280
MspR9I CCNGG 2 cut(s) 1180, 1309
MunI CAATTG 1 cut(s) 1068
MvaI CCWGG 2 cut(s) 1180, 1309
MwoI GCNNNNNNNGC 3 cut(s) 306, 638, 1073
NcoI CCATGG 1 cut(s) 819
NdeII GATC 7 cut(s) 152, 158, 302, 367, 684, 931, 1236
NlaIII CATG 7 cut(s) 313, 612, 668, 823, 1243, 1319, 1410
NlaIV GGNNCC 9 cut(s) 215, 774, 817, 1158, 1188, 1218, 1248, 1293, 1313
NmuCI GTSAC 1 cut(s) 439
NspI RCATGY 1 cut(s) 1410
PdmI GAANNNNTTC 2 cut(s) 74, 1001
PfeI GAWTC 2 cut(s) 170, 525
PinAI ACCGGT 1 cut(s) 1279
PkrI GCNGC 3 cut(s) 283, 643, 832
PleI GAGTC 2 cut(s) 208, 1089
PpsI GAGTC 2 cut(s) 208, 1089
Psp6I CCWGG 2 cut(s) 1178, 1307
PspFI CCCAGC 1 cut(s) 242
PspGI CCWGG 2 cut(s) 1178, 1307
PspN4I GGNNCC 9 cut(s) 215, 774, 817, 1158, 1188, 1218, 1248, 1293, 1313
PspPI GGNCC 5 cut(s) 240, 773, 942, 1195, 1312
PstNI CAGNNNCTG 2 cut(s) 269, 836
PsuI RGATCY 3 cut(s) 152, 158, 367
RsaI GTAC 2 cut(s) 52, 1040
RsaNI GTAC 2 cut(s) 51, 1039
SaqAI TTAA 5 cut(s) 354, 450, 788, 1010, 1400
SatI GCNGC 3 cut(s) 282, 642, 831
Sau3AI GATC 7 cut(s) 152, 158, 302, 367, 684, 931, 1236
Sau96I GGNCC 5 cut(s) 240, 773, 942, 1195, 1312
SchI GAGTC 2 cut(s) 209, 1089
ScrFI CCNGG 2 cut(s) 1180, 1309
SduI GDGCHC 1 cut(s) 429
SfaNI GCATC 2 cut(s) 481, 628
SinI GGWCC 2 cut(s) 773, 1312
SmlI CTYRAG 2 cut(s) 205, 1046
SmoI CTYRAG 2 cut(s) 205, 1046
SpeI ACTAGT 1 cut(s) 490
Sse9I AATT 5 cut(s) 28, 292, 1068, 1205, 1285
SsiI CCGC 1 cut(s) 806
SspI AATATT 1 cut(s) 258
SspMI CTAG 4 cut(s) 225, 491, 765, 1023
StyD4I CCNGG 2 cut(s) 1178, 1307
StyI CCWWGG 2 cut(s) 819, 1022
TaaI ACNGT 5 cut(s) 57, 265, 503, 1109, 1324
TaiI ACGT 2 cut(s) 798, 859
TaqI TCGA 1 cut(s) 934
TasI AATT 5 cut(s) 28, 292, 1068, 1205, 1285
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 2 cut(s) 170, 525
Tru1I TTAA 5 cut(s) 354, 450, 788, 1010, 1400
Tru9I TTAA 5 cut(s) 354, 450, 788, 1010, 1400
TscAI CASTG 3 cut(s) 27, 60, 1329
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 3 cut(s) 281, 641, 830
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 8 cut(s) 83, 120, 161, 531, 561, 597, 681, 1332
TspRI CASTG 3 cut(s) 27, 60, 1329
VpaK11BI GGWCC 2 cut(s) 773, 1312
XagI CCTNNNNNAGG 1 cut(s) 208
XapI RAATTY 3 cut(s) 28, 292, 1205
XceI RCATGY 1 cut(s) 1410
XcmI CCANNNNNNNNNTGG 1 cut(s) 1084
XmaJI CCTAGG 1 cut(s) 1022
XmnI GAANNNNTTC 2 cut(s) 74, 1001
XspI CTAG 4 cut(s) 225, 491, 765, 1023
ZraI GACGTC 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.