Rroxscaffold_6G00411300

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
33796127 .. 33799821
3695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411300.1

Sequence Viewer

Length: 1236 bp
ATGCAAAGAAAAGAATATGCACTGCTAAATTCTGCGAGGATTATGTGTTGTACGCTGTTGGGAGCTATGAAGTGCTTCTCCTTCTATCTTGGAGACAAAAAGGATGAACCAAAAAGTCCAAATACAACATTTACCGATGGTGAAATGAAGAGATCTGGATCTGAGTTGGATTCCCAGAATATCTCTGACGCCAGTTCAGAGTCCTTGAGGAGGAGCCAATATCCTAGTTTCTCTCAGAGGGCCAGCAACCTCAGAATATTCACAGTTTCTGAGCTGAAGGCAGCCACTAAGAATTTCGGCCGATCTGGCATGGTTGGAGAGGGTGGGTTTGGGTGTGTCTATAAAGGGCAGATTAAGAGTTTAGAAGATCCATCCCAAAAACTTGAAGTTGCCGTGAAACAGCTCAGTAAAAGAGGGTTGCAGGGGCACAAGGAATGGGTGACAGAAGTTAATGTTCTCGGCGTGGTTGAGCATCCAAACCTTGTCAAACTAGTGGGCTACTGTGCTGAGGATGATGAAAGAGGAATCCAGCGACTTCTTATTTATGAATATATGCCTAATGGAAGTGTAGAGAACCATTTATCAAATCGTTCAGATACACCTCTTTCATGGGCTATGCGATTGAAAATAGCACAAGATGCTGCTCGTGGCTTAGCATACCTACATGAAGAAATGGATTTTCAGATCATTTTCAGGGATTTCAAATCTTCAAATATCCTGTTGGATGAGGAGTGGAACGCAAAGCTATCAGATTTTGGAATGGCTAGGTTGGGTCCAGCAGAAGGATTAAGCCACGTCTCAACAGCGGTTGTTGGAACCATGGGTTATGCAGCACCTGAGTATATCCAGACTGGACGTCTAACATCTAAAAATGATGTGTGGAGCTATGGGGTCTTTCTCTATGAGCTCATTACAGGTAGGCGTCCTCTGGATCGAAACCGGCCCAAGAGTGAGCAGAAACTCTTAGAATGGGTAAAGCCATACCTGTCAGACTTGAAGAAGTTCAGGTTAATAATAGACCCTAGGCTTGAAGGTAAGTATCCCCTCAAGTCAGTTCAAAAGCTTGCAATTGTAGCCAACAGATGTTTGGTCAGACTCCCCAAGAACCGTCCAAAGATGAGTGAGGTGTTGGAAATGGTAAATCAGATTATAGAGGCACCATCAGGCCAGAAAAAAAACCAAGGAGGCACCATCGGGCCAAATCAAATTCAAGGAGGCTCCATCTGGCCAAAATAA

Protein Analysis

411

Amino Acids

46.21

Weight (kDa)

9.2

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 103 - 378 2.3e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 104 - 378 1.5e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 859
AccB1I GGYRCC 2 cut(s) 1156, 1187
AciI CCGC 1 cut(s) 806
AclWI GGATC 3 cut(s) 166, 362, 939
AcoI YGGCCR 2 cut(s) 298, 1226
AcsI RAATTY 3 cut(s) 28, 292, 1206
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 3 cut(s) 189, 856, 922
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 2 cut(s) 210, 782
AgsI TTSAA 8 cut(s) 386, 625, 703, 711, 997, 1031, 1058, 1211
AhdI GACNNNNNGTC 1 cut(s) 855
AhlI ACTAGT 1 cut(s) 490
AjiI CACGTC 1 cut(s) 796
AluBI AGCT 7 cut(s) 65, 274, 403, 745, 885, 907, 1063
AluI AGCT 7 cut(s) 65, 274, 403, 745, 885, 907, 1063
Alw21I GWGCWC 1 cut(s) 909
Alw26I GTCTC 2 cut(s) 87, 802
AlwI GGATC 3 cut(s) 166, 362, 939
AlwNI CAGNNNCTG 2 cut(s) 269, 836
AoxI GGCC 6 cut(s) 240, 298, 941, 1165, 1196, 1226
ApeKI GCWGC 3 cut(s) 281, 641, 830
ApoI RAATTY 3 cut(s) 28, 292, 1206
Asp700I GAANNNNTTC 2 cut(s) 74, 1001
AspA2I CCTAGG 1 cut(s) 1022
AspS9I GGNCC 4 cut(s) 240, 773, 942, 1196
AsuHPI GGTGA 2 cut(s) 152, 451
AvaII GGWCC 1 cut(s) 773
AvrII CCTAGG 1 cut(s) 1022
BaeGI GKGCMC 1 cut(s) 429
BalI TGGCCA 1 cut(s) 1228
BanI GGYRCC 2 cut(s) 1156, 1187
BanII GRGCYC 1 cut(s) 909
BauI CACGAG 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 909
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 3 cut(s) 293, 628, 842
BccI CCATC 5 cut(s) 131, 379, 1168, 1199, 1229
BceAI ACGGC 1 cut(s) 377
BciVI GTATCC 1 cut(s) 1050
BcoDI GTCTC 2 cut(s) 87, 802
BcuI ACTAGT 1 cut(s) 490
BfaI CTAG 4 cut(s) 225, 491, 765, 1023
BfuI GTATCC 1 cut(s) 1050
BglI GCCNNNNNGGC 1 cut(s) 306
BglII AGATCT 1 cut(s) 152
BisI GCNGC 3 cut(s) 282, 642, 831
BlnI CCTAGG 1 cut(s) 1022
BlpI GCTNAGC 1 cut(s) 652
BlsI GCNGC 3 cut(s) 283, 643, 832
Bme18I GGWCC 1 cut(s) 773
BmeRI GACNNNNNGTC 1 cut(s) 855
BmgBI CACGTC 1 cut(s) 796
BmgT120I GGNCC 4 cut(s) 240, 773, 942, 1196
BmiI GGNNCC 6 cut(s) 215, 774, 817, 1158, 1189, 1219
BmsI GCATC 2 cut(s) 481, 628
Bpu10I CCTNAGC 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 652
BpuEI CTTGAG 2 cut(s) 226, 1031
BsaBI GATNNNNATC 1 cut(s) 157
BsaHI GRCGYC 3 cut(s) 189, 856, 922
BsaJI CCNNGG 3 cut(s) 819, 1022, 1180
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 782
Bse118I RCCGGY 1 cut(s) 939
Bse1I ACTGG 2 cut(s) 192, 856
Bse8I GATNNNNATC 1 cut(s) 157
BseDI CCNNGG 3 cut(s) 819, 1022, 1180
BseGI GGATG 5 cut(s) 109, 371, 472, 517, 730
BseJI GATNNNNATC 1 cut(s) 157
BseLI CCNNNNNNNGG 2 cut(s) 210, 782
BseMII CTCAG 7 cut(s) 153, 248, 261, 265, 418, 498, 828
BseNI ACTGG 2 cut(s) 192, 856
BseRI GAGGAG 3 cut(s) 223, 226, 743
BseSI GKGCMC 1 cut(s) 429
BseX3I CGGCCG 1 cut(s) 298
BseXI GCAGC 3 cut(s) 293, 628, 842
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 6 cut(s) 242, 300, 943, 1167, 1198, 1228
BshNI GGYRCC 2 cut(s) 1156, 1187
BsiEI CGRYCG 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 909
BsiSI CCGG 1 cut(s) 940
BslI CCNNNNNNNGG 2 cut(s) 210, 782
BsmAI GTCTC 2 cut(s) 87, 802
BsmBI CGTCTC 1 cut(s) 802
BsnI GGCC 6 cut(s) 242, 300, 943, 1167, 1198, 1228
Bsp1286I GDGCHC 2 cut(s) 429, 909
Bsp143I GATC 6 cut(s) 152, 158, 302, 367, 684, 931
Bsp1720I GCTNAGC 1 cut(s) 652
Bsp19I CCATGG 1 cut(s) 819
BspACI CCGC 1 cut(s) 806
BspANI GGCC 6 cut(s) 242, 300, 943, 1167, 1198, 1228
BspCNI CTCAG 7 cut(s) 154, 247, 262, 264, 417, 499, 829
BspLI GGNNCC 6 cut(s) 215, 774, 817, 1158, 1189, 1219
BspPI GGATC 3 cut(s) 166, 362, 939
BspT107I GGYRCC 2 cut(s) 1156, 1187
BsrFI RCCGGY 1 cut(s) 939
BsrI ACTGG 2 cut(s) 192, 856
BssAI RCCGGY 1 cut(s) 939
BssECI CCNNGG 3 cut(s) 819, 1022, 1180
BssMI GATC 6 cut(s) 152, 158, 302, 367, 684, 931
BssNI GRCGYC 3 cut(s) 189, 856, 922
BssSI CACGAG 1 cut(s) 645
BssT1I CCWWGG 3 cut(s) 819, 1022, 1180
Bst2BI CACGAG 1 cut(s) 645
Bst4CI ACNGT 3 cut(s) 265, 503, 1109
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 3 cut(s) 189, 856, 922
BstAPI GCANNNNNTGC 1 cut(s) 638
BstC8I GCNNGC 2 cut(s) 244, 1065
BstDSI CCRYGG 1 cut(s) 819
BstENI CCTNNNNNAGG 1 cut(s) 208
BstF5I GGATG 5 cut(s) 109, 371, 472, 517, 730
BstKTI GATC 6 cut(s) 155, 161, 305, 370, 687, 934
BstMAI GTCTC 2 cut(s) 87, 802
BstMBI GATC 6 cut(s) 152, 158, 302, 367, 684, 931
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 306, 638, 1073
BstSLI GKGCMC 1 cut(s) 429
BstV1I GCAGC 3 cut(s) 293, 628, 842
BstX2I RGATCY 3 cut(s) 152, 158, 367
BstYI RGATCY 3 cut(s) 152, 158, 367
BstZI CGGCCG 1 cut(s) 298
BsuI GTATCC 1 cut(s) 1050
BsuRI GGCC 6 cut(s) 242, 300, 943, 1167, 1198, 1228
BtgI CCRYGG 1 cut(s) 819
BtrI CACGTC 1 cut(s) 796
BtsCI GGATG 5 cut(s) 109, 371, 472, 517, 730
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 2 cut(s) 244, 1065
CaiI CAGNNNCTG 2 cut(s) 269, 836
Cfr10I RCCGGY 1 cut(s) 939
Cfr13I GGNCC 4 cut(s) 240, 773, 942, 1196
CseI GACGC 2 cut(s) 197, 911
Csp6I GTAC 1 cut(s) 51
CviAII CATG 4 cut(s) 310, 609, 665, 820
CviQI GTAC 1 cut(s) 51
DpnI GATC 6 cut(s) 154, 160, 304, 369, 686, 933
DpnII GATC 6 cut(s) 152, 158, 302, 367, 684, 931
DriI GACNNNNNGTC 1 cut(s) 855
EaeI YGGCCR 2 cut(s) 298, 1226
EagI CGGCCG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 143
Eam1105I GACNNNNNGTC 1 cut(s) 855
EarI CTCTTC 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 907
EclXI CGGCCG 1 cut(s) 298
Eco130I CCWWGG 3 cut(s) 819, 1022, 1180
Eco24I GRGCYC 1 cut(s) 909
Eco47I GGWCC 1 cut(s) 773
Eco52I CGGCCG 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 907
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoT14I CCWWGG 3 cut(s) 819, 1022, 1180
EcoT38I GRGCYC 1 cut(s) 909
ErhI CCWWGG 3 cut(s) 819, 1022, 1180
Esp3I CGTCTC 1 cut(s) 802
FaeI CATG 4 cut(s) 313, 612, 668, 823
FatI CATG 4 cut(s) 309, 608, 664, 819
Fnu4HI GCNGC 3 cut(s) 282, 642, 831
FokI GGATG 5 cut(s) 116, 358, 459, 524, 737
FriOI GRGCYC 1 cut(s) 909
Fsp4HI GCNGC 3 cut(s) 282, 642, 831
FspBI CTAG 4 cut(s) 225, 491, 765, 1023
GluI GCNGC 3 cut(s) 282, 642, 831
HaeIII GGCC 6 cut(s) 242, 300, 943, 1167, 1198, 1228
HapII CCGG 1 cut(s) 940
HgaI GACGC 2 cut(s) 197, 911
Hin1I GRCGYC 3 cut(s) 189, 856, 922
Hin1II CATG 4 cut(s) 313, 612, 668, 823
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 4 cut(s) 170, 200, 525, 1095
HpaII CCGG 1 cut(s) 940
HphI GGTGA 2 cut(s) 152, 451
Hpy188III TCNNGA 3 cut(s) 156, 847, 929
HpyAV CCTTC 4 cut(s) 91, 271, 776, 1025
HpyCH4III ACNGT 3 cut(s) 265, 503, 1109
HpyCH4IV ACGT 2 cut(s) 795, 856
HpyCH4V TGCA 5 cut(s) 4, 20, 421, 830, 1067
HpyF10VI GCNNNNNNNGC 3 cut(s) 306, 638, 1073
HpySE526I ACGT 2 cut(s) 795, 856
Hsp92I GRCGYC 3 cut(s) 189, 856, 922
Hsp92II CATG 4 cut(s) 313, 612, 668, 823
Kzo9I GATC 6 cut(s) 152, 158, 302, 367, 684, 931
LmnI GCTCC 4 cut(s) 62, 213, 882, 1223
Lsp1109I GCAGC 3 cut(s) 293, 628, 842
LweI GCATC 2 cut(s) 481, 628
MaeI CTAG 4 cut(s) 225, 491, 765, 1023
MaeII ACGT 2 cut(s) 795, 856
MaeIII GTNAC 1 cut(s) 439
MalI GATC 6 cut(s) 154, 160, 304, 369, 686, 933
MboI GATC 6 cut(s) 152, 158, 302, 367, 684, 931
MboII GAAGA 5 cut(s) 160, 377, 680, 699, 1009
MfeI CAATTG 1 cut(s) 1068
MflI RGATCY 3 cut(s) 152, 158, 367
MhlI GDGCHC 2 cut(s) 429, 909
MlsI TGGCCA 1 cut(s) 1228
MluCI AATT 4 cut(s) 28, 292, 1068, 1206
MluNI TGGCCA 1 cut(s) 1228
MlyI GAGTC 2 cut(s) 209, 1089
MmeI TCCRAC 5 cut(s) 147, 295, 702, 793, 1110
Mox20I TGGCCA 1 cut(s) 1228
MroXI GAANNNNTTC 2 cut(s) 74, 1001
MscI TGGCCA 1 cut(s) 1228
MseI TTAA 4 cut(s) 354, 450, 788, 1010
Msp20I TGGCCA 1 cut(s) 1228
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 1 cut(s) 940
MunI CAATTG 1 cut(s) 1068
MwoI GCNNNNNNNGC 3 cut(s) 306, 638, 1073
NcoI CCATGG 1 cut(s) 819
NdeII GATC 6 cut(s) 152, 158, 302, 367, 684, 931
NlaIII CATG 4 cut(s) 313, 612, 668, 823
NlaIV GGNNCC 6 cut(s) 215, 774, 817, 1158, 1189, 1219
NmeAIII GCCGAG 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 439
PdmI GAANNNNTTC 2 cut(s) 74, 1001
PfeI GAWTC 2 cut(s) 170, 525
PkrI GCNGC 3 cut(s) 283, 643, 832
PleI GAGTC 2 cut(s) 208, 1089
PpsI GAGTC 2 cut(s) 208, 1089
Psp124BI GAGCTC 1 cut(s) 909
PspN4I GGNNCC 6 cut(s) 215, 774, 817, 1158, 1189, 1219
PspPI GGNCC 4 cut(s) 240, 773, 942, 1196
PstNI CAGNNNCTG 2 cut(s) 269, 836
PsuI RGATCY 3 cut(s) 152, 158, 367
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SacI GAGCTC 1 cut(s) 909
SaqAI TTAA 4 cut(s) 354, 450, 788, 1010
SatI GCNGC 3 cut(s) 282, 642, 831
Sau3AI GATC 6 cut(s) 152, 158, 302, 367, 684, 931
Sau96I GGNCC 4 cut(s) 240, 773, 942, 1196
SchI GAGTC 2 cut(s) 209, 1089
SduI GDGCHC 2 cut(s) 429, 909
SfaNI GCATC 2 cut(s) 481, 628
SinI GGWCC 1 cut(s) 773
SmlI CTYRAG 2 cut(s) 205, 1046
SmoI CTYRAG 2 cut(s) 205, 1046
SpeI ACTAGT 1 cut(s) 490
Sse9I AATT 4 cut(s) 28, 292, 1068, 1206
SsiI CCGC 1 cut(s) 806
SspI AATATT 1 cut(s) 258
SspMI CTAG 4 cut(s) 225, 491, 765, 1023
SstI GAGCTC 1 cut(s) 909
StyI CCWWGG 3 cut(s) 819, 1022, 1180
TaaI ACNGT 3 cut(s) 265, 503, 1109
TaiI ACGT 2 cut(s) 798, 859
TaqI TCGA 1 cut(s) 934
TasI AATT 4 cut(s) 28, 292, 1068, 1206
TfiI GAWTC 2 cut(s) 170, 525
Tru1I TTAA 4 cut(s) 354, 450, 788, 1010
Tru9I TTAA 4 cut(s) 354, 450, 788, 1010
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 3 cut(s) 281, 641, 830
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 7 cut(s) 83, 120, 161, 531, 561, 597, 681
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 773
XagI CCTNNNNNAGG 1 cut(s) 208
XapI RAATTY 3 cut(s) 28, 292, 1206
XcmI CCANNNNNNNNNTGG 1 cut(s) 1084
XmaJI CCTAGG 1 cut(s) 1022
XmnI GAANNNNTTC 2 cut(s) 74, 1001
XspI CTAG 4 cut(s) 225, 491, 765, 1023
ZraI GACGTC 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.