Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003497

Physical Location & Seq

Genomic Coordinates Forward (+)

8457483 .. 8459115

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0105900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAATTCTTCTAGGAAGCGAAAGAAAGCAGCTCTGTATGAACAACTTCGGGCTGCCACCAATTCCACTGCTATGAACAAAGCTTCAATTATAGTTGATGCATCCAAATACATCCAGGAGTTGAAGCAGAAAGTGGACACACTCAACCAAGACGTTGGAACTTCGCAAAATTCATCGTCACCTGCGCAGGTTACTGTGGAAACCCTAGAAAGGGGTTTTCTTATTAGTGTCTTGTCAGAAAAGAACTGCCCAGGTTTGCTCGTTTCCATTCTAGAAGCCTTTGAAGACCTGGGCCTTGATGTGCTCGATGCTAGGGTTTCTTGTGCAGACAGTTTCCAACTGGAAGCGGTTGGAGGAGAAAACCAAGGAGAGGCTGATAGCATAGATGCACAGGTGGTGAAACAAGCGGTGTTGCAAGCTATTCAGAACTGGAGCCAGATCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

148

Amino Acids

16.02

Weight (kDa)

4.74

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-TF_ACT-like_plant	PF22754	63 - 142	3.7e-26	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37010 AT2G37010
fragaria_vesca	FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150
malus_domestica	MD12G1115400.v1.1
prunus_persica	Prupe.6G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469991
rosa_laevigata	RLG00000024306
rosa_multiflora	Rmu_sc0000831.1_g000026 Rmu_sc0003342.1_g000004 Rmu_sc0007963.1_g000003 Rmu_sc0008347.1_g000006 Rmu_sc0020091.1_g000002 Rmu_ssc0000397.1_g000046
rosa_roxburghii	Rroxscaffold_6G00411310
rosa_rugosa	Rorug03G0105900 Rorug03G0105900
rosa_samantha	Rh1AG175800 Rh1CG163700 Rh2BG425000 Rh3AG155000 Rh3BG179100 Rh3CG169700 Rh3DG196100 Rh4CG158900 Rh5AG391600 Rh5CG032200 Rh7CG425900
rosa_wichuraiana	Rw3G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
Acc16I	TGCGCA	1 cut(s)	186
Acc36I	ACCTGC	2 cut(s)	178, 190
AciI	CCGC	2 cut(s)	347, 407
AcsI	RAATTY	2 cut(s)	4, 169
AfiI	CCNNNNNNNGG	3 cut(s)	210, 211, 370
AgsI	TTSAA	3 cut(s)	87, 124, 284
AjnI	CCWGG	3 cut(s)	114, 250, 288
AluBI	AGCT	3 cut(s)	32, 83, 419
AluI	AGCT	3 cut(s)	32, 83, 419
Alw21I	GWGCWC	1 cut(s)	306
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	29, 53
ApoI	RAATTY	2 cut(s)	4, 169
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	171, 409
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	40, 41
BciT130I	CCWGG	3 cut(s)	116, 252, 290
BfaI	CTAG	5 cut(s)	12, 206, 272, 312, 445
BfuAI	ACCTGC	2 cut(s)	178, 190
BisI	GCNGC	2 cut(s)	30, 54
BlsI	GCNGC	2 cut(s)	31, 55
Bme1390I	CCNGG	3 cut(s)	116, 252, 290
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	3 cut(s)	116, 252, 290
BmsI	GCATC	4 cut(s)	88, 110, 298, 376
BpiI	GAAGAC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	250, 289, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 211, 370
Bse1I	ACTGG	2 cut(s)	345, 434
BseBI	CCWGG	3 cut(s)	116, 252, 290
BseDI	CCNNGG	3 cut(s)	250, 289, 364
BseGI	GGATG	2 cut(s)	101, 111
BseLI	CCNNNNNNNGG	3 cut(s)	210, 211, 370
BseNI	ACTGG	2 cut(s)	345, 434
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	40, 41
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	306
BslI	CCNNNNNNNGG	3 cut(s)	210, 211, 370
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	438
BspACI	CCGC	2 cut(s)	347, 407
BspANI	GGCC	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	434
BspMI	ACCTGC	2 cut(s)	178, 190
BsrI	ACTGG	2 cut(s)	345, 434
BssECI	CCNNGG	3 cut(s)	250, 289, 364
BssMI	GATC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	3 cut(s)	116, 252, 290
Bst4CI	ACNGT	2 cut(s)	196, 332
BstC8I	GCNNGC	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	101, 111
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	438
BstNI	CCWGG	3 cut(s)	116, 252, 290
BstSCI	CCNGG	3 cut(s)	114, 250, 288
BstV1I	GCAGC	2 cut(s)	40, 41
BstV2I	GAAGAC	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	101, 111
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	2 cut(s)	178, 190
Cac8I	GCNNGC	1 cut(s)	417
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	292
CviJI	RGCY	8 cut(s)	32, 53, 83, 278, 294, 374, 419, 435
CviKI_1	RGCY	8 cut(s)	32, 53, 83, 278, 294, 374, 419, 435
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	114, 250, 288
EcoT14I	CCWWGG	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	364
FaiI	YATR	4 cut(s)	39, 74, 92, 383
Fnu4HI	GCNGC	2 cut(s)	30, 54
FokI	GGATG	2 cut(s)	88, 98
Fsp4HI	GCNGC	2 cut(s)	30, 54
FspBI	CTAG	5 cut(s)	12, 206, 272, 312, 445
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	2 cut(s)	30, 54
HaeIII	GGCC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	81
HphI	GGTGA	2 cut(s)	171, 409
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	238, 426
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	196, 332
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	101, 326, 389, 415
HpySE526I	ACGT	1 cut(s)	153
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	432
Lsp1109I	GCAGC	2 cut(s)	40, 41
LweI	GCATC	4 cut(s)	88, 110, 298, 376
MaeI	CTAG	5 cut(s)	12, 206, 272, 312, 445
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	177, 190
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	4 cut(s)	4, 61, 87, 169
MmeI	TCCRAC	3 cut(s)	136, 331, 361
MnlI	CCTC	2 cut(s)	347, 364
Mph1103I	ATGCAT	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	71
MspR9I	CCNGG	3 cut(s)	116, 252, 290
MvaI	CCWGG	3 cut(s)	116, 252, 290
NdeII	GATC	1 cut(s)	438
NlaIV	GGNNCC	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	177
NsbI	TGCGCA	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	103
PaqCI	CACCTGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	31, 55
Psp6I	CCWGG	3 cut(s)	114, 250, 288
PspGI	CCWGG	3 cut(s)	114, 250, 288
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	71
SatI	GCNGC	2 cut(s)	30, 54
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	3 cut(s)	116, 252, 290
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	9 cut(s)	34, 85, 156, 184, 192, 256, 291, 396, 421
SfaNI	GCATC	4 cut(s)	88, 110, 298, 376
SmiMI	CAYNNNNRTG	1 cut(s)	71
Sse9I	AATT	4 cut(s)	4, 61, 87, 169
SsiI	CCGC	2 cut(s)	347, 407
SspMI	CTAG	5 cut(s)	12, 206, 272, 312, 445
StyD4I	CCNGG	3 cut(s)	114, 250, 288
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	2 cut(s)	196, 332
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	306
TasI	AATT	4 cut(s)	4, 61, 87, 169
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	2 cut(s)	29, 53
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	4 cut(s)	17, 54, 89, 162
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	4, 169
XbaI	TCTAGA	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	5 cut(s)	12, 206, 272, 312, 445
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.